HG10013881 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10013881
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	expressed protein localized to the inner membrane of the chloroplast.
Location	Chr02: 5668286 .. 5669422 (+)
RNA-Seq Expression	HG10013881
Synteny	HG10013881

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGTGATGGCGGACGATCAAGCAATGCAGGCATTTTTATTGGAGGTTTTGTATTGGGAGGGCTCATAGTTGGCACACTGGGCTGTGTATATGCCCCTCAGGTTTTTGACTTTTGTTCATCTCTTATCTAACCCCTAAATTGTACACATGGGTAATTCCACCTTGTATATCTGTTACTTGTGTGTTATGGATGCTAAATTATGGAAGATACATATTTAAGTTATCTACCATGAAATATGCACAACTGTTGTCTCTGAACTTCAAGTCCAAATCCTAGACCTTTTATGACTGATGGTTGATCTTGTATTTGAATTTCAGATTAGCAAGGCACTTGCTGGAGCAGACCGAAAAGATTTGATGAGGAAACTTCCCAAGTTCATATATGATGAAGAAAAAGCTTTAGAGGTGCAAAATCACTCAGTCTCTTCTTATTTGTTGCAAGTTATCTCCTGAATGAACGTTTTGTCCTCGCTAGACATTGATTTACCTAATGATAATCGTGAATTTTATTTTATTTTTTTGGTAACATCACATATATACTTCTTAACCACCCTGAGTTGGCAGAGTGATAATTGGGATCTGAAAAAAGTAAGCAGTAAGCTCAAATAAAATGAATTCTACTAGTTTTTGTTGGCAACGAAATGTAGTAGGTTGTCAAAAATGTTAAAATGTGCTTGTAAATCGTAGTTTCCTACTGGGGGTATTTGACTTGGGCGTGGTCTAGAAGTTTAGCAAAACTGGTAGAACAGGGTAAGCAAAGCAAATCTACACCAATCTAGATTTATACAAAATTGACCTATGAATCAAACACAAACCCATGTTGCTGACCAAAAGAACATGAATATGTCATATGTCAATATTTTGGTTTTGTTTATGGAATTTGTTTTCCTTTTTTAAAAATTCTGAACTTCATCTTTAGAAGAAATAACAAACTGTTTCTGCTTGGTTTTTGGTTTTTGATGTACCAACATGTACATGTTGTTTTAATTCAAATTGCAGAAAACAAGAAAAGTGCTGGCACAGAAGATTGAACAATTGAACTCTGCAATTGATGAGGTTTCTGCTCAGCTCCGCACAGAGGATCCCCCAAATGGAGTGGCTGTGAACTCTGACGAAGTTGAACCTGCCATTTGA

mRNA sequence

ATGACAGTGATGGCGGACGATCAAGCAATGCAGGCATTTTTATTGGAGATTAGCAAGGCACTTGCTGGAGCAGACCGAAAAGATTTGATGAGGAAACTTCCCAAGTTCATATATGATGAAGAAAAAGCTTTAGAGAAAACAAGAAAAGTGCTGGCACAGAAGATTGAACAATTGAACTCTGCAATTGATGAGGTTTCTGCTCAGCTCCGCACAGAGGATCCCCCAAATGGAGTGGCTGTGAACTCTGACGAAGTTGAACCTGCCATTTGA

Coding sequence (CDS)

ATGACAGTGATGGCGGACGATCAAGCAATGCAGGCATTTTTATTGGAGATTAGCAAGGCACTTGCTGGAGCAGACCGAAAAGATTTGATGAGGAAACTTCCCAAGTTCATATATGATGAAGAAAAAGCTTTAGAGAAAACAAGAAAAGTGCTGGCACAGAAGATTGAACAATTGAACTCTGCAATTGATGAGGTTTCTGCTCAGCTCCGCACAGAGGATCCCCCAAATGGAGTGGCTGTGAACTCTGACGAAGTTGAACCTGCCATTTGA

Protein sequence

MTVMADDQAMQAFLLEISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPPNGVAVNSDEVEPAI

Homology

[Close]

BLAST of HG10013881 vs. NCBI nr
Match: XP_038900139.1 (uncharacterized protein LOC120087268 [Benincasa hispida])

HSP 1 Score: 138.7 bits (348), Expect = 2.5e-29
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 16  EISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPP 75
           +ISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPP
Sbjct: 97  QISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPP 156

Query: 76  NGVAVNSDEVEPAI 90
           NGVAVNSDEVEPAI
Sbjct: 157 NGVAVNSDEVEPAI 170

[Close]

BLAST of HG10013881 vs. NCBI nr
Match: XP_022135691.1 (uncharacterized protein LOC111007585 [Momordica charantia])

HSP 1 Score: 133.3 bits (334), Expect = 1.1e-27
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 16  EISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPP 75
           +ISKA+AGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVS QLRTED P
Sbjct: 97  QISKAIAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSTQLRTEDSP 156

Query: 76  NGVAVNSDEVEPAI 90
           NGVAVNSDEVEPAI
Sbjct: 157 NGVAVNSDEVEPAI 170

[Close]

BLAST of HG10013881 vs. NCBI nr
Match: XP_023521457.1 (uncharacterized protein LOC111785280 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.9 bits (333), Expect = 1.4e-27
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 16  EISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPP 75
           +ISKALAG DRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVS+QLRTED P
Sbjct: 97  QISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSP 156

Query: 76  NGVAVNSDEVEPAI 90
           NGVAVNSDEVEPAI
Sbjct: 157 NGVAVNSDEVEPAI 170

[Close]

BLAST of HG10013881 vs. NCBI nr
Match: KAG6591206.1 (hypothetical protein SDJN03_13552, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024090.1 hypothetical protein SDJN02_12903, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.9 bits (333), Expect = 1.4e-27
Identity = 68/74 (91.89%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 16  EISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPP 75
           +ISKALAG DRK+LMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVS+QLRT+DPP
Sbjct: 103 QISKALAGTDRKELMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTDDPP 162

Query: 76  NGVAVNSDEVEPAI 90
           NGVAVNSDE+EPAI
Sbjct: 163 NGVAVNSDEIEPAI 176

[Close]

BLAST of HG10013881 vs. NCBI nr
Match: XP_023535792.1 (uncharacterized protein LOC111797119 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.9 bits (333), Expect = 1.4e-27
Identity = 68/74 (91.89%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 16  EISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPP 75
           +ISKALAG DRK+LMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVS+QLRT+DPP
Sbjct: 97  QISKALAGTDRKELMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTDDPP 156

Query: 76  NGVAVNSDEVEPAI 90
           NGVAVNSDE+EPAI
Sbjct: 157 NGVAVNSDEIEPAI 170

[Close]

BLAST of HG10013881 vs. ExPASy TrEMBL
Match: A0A6J1C1G6 (uncharacterized protein LOC111007585 OS=Momordica charantia OX=3673 GN=LOC111007585 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.1e-28
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 16  EISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPP 75
           +ISKA+AGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVS QLRTED P
Sbjct: 97  QISKAIAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSTQLRTEDSP 156

Query: 76  NGVAVNSDEVEPAI 90
           NGVAVNSDEVEPAI
Sbjct: 157 NGVAVNSDEVEPAI 170

[Close]

BLAST of HG10013881 vs. ExPASy TrEMBL
Match: A0A6J1IGB6 (uncharacterized protein LOC111474436 OS=Cucurbita maxima OX=3661 GN=LOC111474436 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 6.7e-28
Identity = 68/74 (91.89%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 16  EISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPP 75
           +ISKALAG DRK+LMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVS+QLRT+DPP
Sbjct: 97  QISKALAGTDRKELMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTDDPP 156

Query: 76  NGVAVNSDEVEPAI 90
           NGVAVNSDE+EPAI
Sbjct: 157 NGVAVNSDEIEPAI 170

[Close]

BLAST of HG10013881 vs. ExPASy TrEMBL
Match: A0A6J1FTW3 (uncharacterized protein LOC111446794 OS=Cucurbita moschata OX=3662 GN=LOC111446794 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 6.7e-28
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 16  EISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPP 75
           +ISKALAG DRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVS+QLRTED P
Sbjct: 97  QISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSP 156

Query: 76  NGVAVNSDEVEPAI 90
           NGVAVNSDEVEPAI
Sbjct: 157 NGVAVNSDEVEPAI 170

[Close]

BLAST of HG10013881 vs. ExPASy TrEMBL
Match: A0A6J1FC82 (uncharacterized protein LOC111442778 OS=Cucurbita moschata OX=3662 GN=LOC111442778 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 6.7e-28
Identity = 68/74 (91.89%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 16  EISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPP 75
           +ISKALAG DRK+LMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVS+QLRT+DPP
Sbjct: 97  QISKALAGTDRKELMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTDDPP 156

Query: 76  NGVAVNSDEVEPAI 90
           NGVAVNSDE+EPAI
Sbjct: 157 NGVAVNSDEIEPAI 170

[Close]

BLAST of HG10013881 vs. ExPASy TrEMBL
Match: A0A1S3BV81 (uncharacterized protein LOC103493844 OS=Cucumis melo OX=3656 GN=LOC103493844 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 8.7e-28
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 16  EISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPP 75
           +ISKA+AGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLR EDPP
Sbjct: 97  QISKAIAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRPEDPP 156

Query: 76  NGVAVNSDEVEPAI 90
           NGVAVNSDEVE AI
Sbjct: 157 NGVAVNSDEVESAI 170

[Close]

BLAST of HG10013881 vs. TAIR 10
Match: AT1G42960.1 (expressed protein localized to the inner membrane of the chloroplast. )

HSP 1 Score: 114.4 bits (285), Expect = 4.7e-26
Identity = 57/71 (80.28%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 16  EISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPP 75
           +ISKA+AGADRKDLMRKLPKFIYDEEKALEKTRKVLA+KI QLNSAID+VS+QL++ED P
Sbjct: 95  QISKAIAGADRKDLMRKLPKFIYDEEKALEKTRKVLAEKIAQLNSAIDDVSSQLKSEDTP 154

Query: 76  NGVAVNSDEVE 87
           NG A+++DE+E
Sbjct: 155 NGAALSTDEIE 165

The following BLAST results are available for this feature:

BLAST of HG10013881 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900139.1	2.5e-29	98.65	uncharacterized protein LOC120087268 [Benincasa hispida]	[more]
XP_022135691.1	1.1e-27	94.59	uncharacterized protein LOC111007585 [Momordica charantia]	[more]
XP_023521457.1	1.4e-27	94.59	uncharacterized protein LOC111785280 [Cucurbita pepo subsp. pepo]	[more]
KAG6591206.1	1.4e-27	91.89	hypothetical protein SDJN03_13552, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023535792.1	1.4e-27	91.89	uncharacterized protein LOC111797119 [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10013881 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10013881 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C1G6	5.1e-28	94.59	uncharacterized protein LOC111007585 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1IGB6	6.7e-28	91.89	uncharacterized protein LOC111474436 OS=Cucurbita maxima OX=3661 GN=LOC111474436...	[more]
A0A6J1FTW3	6.7e-28	94.59	uncharacterized protein LOC111446794 OS=Cucurbita moschata OX=3662 GN=LOC1114467...	[more]
A0A6J1FC82	6.7e-28	91.89	uncharacterized protein LOC111442778 OS=Cucurbita moschata OX=3662 GN=LOC1114427...	[more]
A0A1S3BV81	8.7e-28	94.59	uncharacterized protein LOC103493844 OS=Cucumis melo OX=3656 GN=LOC103493844 PE=...	[more]

BLAST of HG10013881 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G42960.1	4.7e-26	80.28	expressed protein localized to the inner membrane of the chloroplast.	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 41..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..89
None	No IPR available	PANTHER	PTHR34048:SF5	INNER MEMBRANE LOCALIZED PROTEIN	coord: 16..89
None	No IPR available	PANTHER	PTHR34048	LOW-DENSITY RECEPTOR-LIKE PROTEIN	coord: 16..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10013881.1	HG10013881.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane