HG10013861 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10013861
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionprotein MODIFYING WALL LIGNIN-2-like
LocationChr02: 5490038 .. 5490516 (+)
RNA-Seq ExpressionHG10013861
SyntenyHG10013861
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAGCCCCTTTCTTCTAGCTTCGTGATAAGCTTTTCCATTGTCGCAGTCCTTAATCTCGCCTCCTTCGCATCCTGTATAGCTGCTGAATTCAACAGAACAAAAGTAAGCTTCTTATCACTTTCTTTTTTTTCTTTCCCATTTACAATTATTAATTTTTACATATAAATTAAAATTGCCTGGATGATCAACAAAATCGGAATCGGAATTTGTTGTAGAAAAAGGACTTGAAATTGAACGGCAGATTGTGCTTCCTGCCTGAAAGTGAAGCATTCAAATTGGGAGTCGGAGGTTTGGTGTGTTTAATAATGGCTCAGATCATCGGAAACACCATAATAATGGCTCAGATCATCGGAAACACCATAATCTGCCATAGCTATTGCCCAAAAGAGCATAGAAAAAGTTGCAGTGTCAAAAGACCTCTGCTTTCAACTACCCTTCTCATCTCTTGGTCGGTAATTCTTTCTTCATACTAA

mRNA sequence

ATGGAAAAGCCCCTTTCTTCTAGCTTCGTGATAAGCTTTTCCATTGTCGCAGTCCTTAATCTCGCCTCCTTCGCATCCTGTATAGCTGCTGAATTCAACAGAACAAAAAAAAAGGACTTGAAATTGAACGGCAGATTGTGCTTCCTGCCTGAAAGTGAAGCATTCAAATTGGGAGTCGGAGGTTTGGTGTGTTTAATAATGGCTCAGATCATCGGAAACACCATAATAATGGCTCAGATCATCGGAAACACCATAATCTGCCATAGCTATTGCCCAAAAGAGCATAGAAAAAGTTGCAGTGTCAAAAGACCTCTGCTTTCAACTACCCTTCTCATCTCTTGGTCGGTAATTCTTTCTTCATACTAA

Coding sequence (CDS)

ATGGAAAAGCCCCTTTCTTCTAGCTTCGTGATAAGCTTTTCCATTGTCGCAGTCCTTAATCTCGCCTCCTTCGCATCCTGTATAGCTGCTGAATTCAACAGAACAAAAAAAAAGGACTTGAAATTGAACGGCAGATTGTGCTTCCTGCCTGAAAGTGAAGCATTCAAATTGGGAGTCGGAGGTTTGGTGTGTTTAATAATGGCTCAGATCATCGGAAACACCATAATAATGGCTCAGATCATCGGAAACACCATAATCTGCCATAGCTATTGCCCAAAAGAGCATAGAAAAAGTTGCAGTGTCAAAAGACCTCTGCTTTCAACTACCCTTCTCATCTCTTGGTCGGTAATTCTTTCTTCATACTAA

Protein sequence

MEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVGGLVCLIMAQIIGNTIIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTLLISWSVILSSY
Homology
BLAST of HG10013861 vs. NCBI nr
Match: XP_038896171.1 (protein MODIFYING WALL LIGNIN-1 [Benincasa hispida])

HSP 1 Score: 175.3 bits (443), Expect = 3.3e-40
Identity = 92/114 (80.70%), Postives = 96/114 (84.21%), Query Frame = 0

Query: 1   MEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVG 60
           MEKP S  FVISFSIVAVL +ASFASC+AAEFNRTKK+DLKLNGRLCFLPESEAFKLGVG
Sbjct: 1   MEKPPSPGFVISFSIVAVLTVASFASCMAAEFNRTKKEDLKLNGRLCFLPESEAFKLGVG 60

Query: 61  GLVCLIMAQIIGNTIIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTLLISW 115
           GLVCL          IMAQIIGN IICHSY PKEHRKSCSVKRP+LS  LLISW
Sbjct: 61  GLVCL----------IMAQIIGNAIICHSYWPKEHRKSCSVKRPMLSIALLISW 104

BLAST of HG10013861 vs. NCBI nr
Match: XP_022937014.1 (uncharacterized protein LOC111443438 [Cucurbita moschata])

HSP 1 Score: 175.3 bits (443), Expect = 3.3e-40
Identity = 94/114 (82.46%), Postives = 97/114 (85.09%), Query Frame = 0

Query: 1   MEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVG 60
           MEKP  SSFVISFSIVAVL LASFASC+AAEFNRTKKKDLKLNGR CFLPESEAFKLGV 
Sbjct: 1   MEKP-PSSFVISFSIVAVLTLASFASCMAAEFNRTKKKDLKLNGRFCFLPESEAFKLGVA 60

Query: 61  GLVCLIMAQIIGNTIIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTLLISW 115
           G+VCL          IMA IIGNTIICH+Y PKEHRKSCSVKRPLLSTTLLISW
Sbjct: 61  GIVCL----------IMAHIIGNTIICHTYWPKEHRKSCSVKRPLLSTTLLISW 103

BLAST of HG10013861 vs. NCBI nr
Match: XP_023535227.1 (uncharacterized protein LOC111796718 [Cucurbita pepo subsp. pepo] >KAG6591859.1 Protein MODIFYING WALL LIGNIN-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024724.1 hypothetical protein SDJN02_13542, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 175.3 bits (443), Expect = 3.3e-40
Identity = 94/114 (82.46%), Postives = 97/114 (85.09%), Query Frame = 0

Query: 1   MEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVG 60
           MEKP  SSFVISFSIVAVL LASFASC+AAEFNRTKKKDLKLNGR CFLPESEAFKLGV 
Sbjct: 1   MEKP-PSSFVISFSIVAVLTLASFASCMAAEFNRTKKKDLKLNGRFCFLPESEAFKLGVA 60

Query: 61  GLVCLIMAQIIGNTIIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTLLISW 115
           G+VCL          IMA IIGNTIICH+Y PKEHRKSCSVKRPLLSTTLLISW
Sbjct: 61  GIVCL----------IMAHIIGNTIICHTYWPKEHRKSCSVKRPLLSTTLLISW 103

BLAST of HG10013861 vs. NCBI nr
Match: KAG6608021.1 (Protein MODIFYING WALL LIGNIN-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174.5 bits (441), Expect = 5.6e-40
Identity = 92/115 (80.00%), Postives = 96/115 (83.48%), Query Frame = 0

Query: 1   MEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVG 60
           MEKP SS FVI FSIVA L LASFASC+AAEFNRT KKDLKLNGR CFLPESEAFKLGV 
Sbjct: 1   MEKPPSSFFVIGFSIVATLTLASFASCMAAEFNRTSKKDLKLNGRFCFLPESEAFKLGVA 60

Query: 61  GLVCLIMAQIIGNTIIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTLLISWS 116
           GL+CL          IMAQIIGNTIICHSY PKE+RKSCSVKRPLLSTTLLISW+
Sbjct: 61  GLICL----------IMAQIIGNTIICHSYWPKENRKSCSVKRPLLSTTLLISWA 105

BLAST of HG10013861 vs. NCBI nr
Match: XP_022940987.1 (uncharacterized protein LOC111446405 [Cucurbita moschata] >XP_022940988.1 uncharacterized protein LOC111446405 [Cucurbita moschata])

HSP 1 Score: 174.5 bits (441), Expect = 5.6e-40
Identity = 92/115 (80.00%), Postives = 96/115 (83.48%), Query Frame = 0

Query: 1   MEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVG 60
           MEKP SS FVI FSIVA L LASFASC+AAEFNRT KKDLKLNGR CFLPESEAFKLGV 
Sbjct: 1   MEKPPSSFFVIGFSIVATLTLASFASCMAAEFNRTSKKDLKLNGRFCFLPESEAFKLGVA 60

Query: 61  GLVCLIMAQIIGNTIIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTLLISWS 116
           GL+CL          IMAQIIGNTIICHSY PKE+RKSCSVKRPLLSTTLLISW+
Sbjct: 61  GLICL----------IMAQIIGNTIICHSYWPKENRKSCSVKRPLLSTTLLISWA 105

BLAST of HG10013861 vs. ExPASy Swiss-Prot
Match: O65708 (Protein MODIFYING WALL LIGNIN-2 OS=Arabidopsis thaliana OX=3702 GN=MWL2 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.0e-09
Identity = 37/104 (35.58%), Postives = 55/104 (52.88%), Query Frame = 0

Query: 13  FSIVAVLNLASFASCIAAEFNRTKKKDLKLN-GRLCFLPESEAFKLGVGGLVCLIMAQII 72
           +S+V  L L SF +C AAEF RT+K+D++ +  R C++P S AF LG   ++C  +AQI+
Sbjct: 7   YSVVFSLGLVSFITCFAAEFKRTQKEDIRWDTERNCYVPGSHAFGLGSAAVLCFCLAQIV 66

Query: 73  GNTIIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTLLISWS 116
           GN ++           H    K           L +  LL+SWS
Sbjct: 67  GNIVVFRN--------HRTRTKREDGYKITDLTLPTVLLLLSWS 102

BLAST of HG10013861 vs. ExPASy Swiss-Prot
Match: A2RVU1 (Protein MODIFYING WALL LIGNIN-1 OS=Arabidopsis thaliana OX=3702 GN=MWL1 PE=1 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-08
Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 0

Query: 16 VAVLNLASFASCIAAEFNRTKK----------KDLKLNGRLCFLPESEAFKLGVGGLVCL 75
          + +  LA+F  C++AEF + K           KDLK +G  C+LPE+ AF LG+  LVC+
Sbjct: 3  IFLFGLAAFFLCLSAEFQKAKALLRAQVFLKGKDLKWDGESCYLPENRAFGLGIAALVCV 62

Query: 76 IMAQIIGNTII 77
           +AQI+GN +I
Sbjct: 63 SVAQIVGNVVI 73

BLAST of HG10013861 vs. ExPASy TrEMBL
Match: A0A6J1F9Y8 (uncharacterized protein LOC111443438 OS=Cucurbita moschata OX=3662 GN=LOC111443438 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.6e-40
Identity = 94/114 (82.46%), Postives = 97/114 (85.09%), Query Frame = 0

Query: 1   MEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVG 60
           MEKP  SSFVISFSIVAVL LASFASC+AAEFNRTKKKDLKLNGR CFLPESEAFKLGV 
Sbjct: 1   MEKP-PSSFVISFSIVAVLTLASFASCMAAEFNRTKKKDLKLNGRFCFLPESEAFKLGVA 60

Query: 61  GLVCLIMAQIIGNTIIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTLLISW 115
           G+VCL          IMA IIGNTIICH+Y PKEHRKSCSVKRPLLSTTLLISW
Sbjct: 61  GIVCL----------IMAHIIGNTIICHTYWPKEHRKSCSVKRPLLSTTLLISW 103

BLAST of HG10013861 vs. ExPASy TrEMBL
Match: A0A6J1FQT7 (uncharacterized protein LOC111446405 OS=Cucurbita moschata OX=3662 GN=LOC111446405 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.7e-40
Identity = 92/115 (80.00%), Postives = 96/115 (83.48%), Query Frame = 0

Query: 1   MEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVG 60
           MEKP SS FVI FSIVA L LASFASC+AAEFNRT KKDLKLNGR CFLPESEAFKLGV 
Sbjct: 1   MEKPPSSFFVIGFSIVATLTLASFASCMAAEFNRTSKKDLKLNGRFCFLPESEAFKLGVA 60

Query: 61  GLVCLIMAQIIGNTIIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTLLISWS 116
           GL+CL          IMAQIIGNTIICHSY PKE+RKSCSVKRPLLSTTLLISW+
Sbjct: 61  GLICL----------IMAQIIGNTIICHSYWPKENRKSCSVKRPLLSTTLLISWA 105

BLAST of HG10013861 vs. ExPASy TrEMBL
Match: A0A1S3B9G0 (uncharacterized protein LOC103487629 OS=Cucumis melo OX=3656 GN=LOC103487629 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.8e-39
Identity = 89/114 (78.07%), Postives = 97/114 (85.09%), Query Frame = 0

Query: 1   MEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVG 60
           MEKP SSSFVISFSIVA+L LASFASC+AAEFNRTKK+DLKLNG+ CFLPESEAFKLG+G
Sbjct: 1   MEKPSSSSFVISFSIVAILTLASFASCLAAEFNRTKKEDLKLNGKFCFLPESEAFKLGIG 60

Query: 61  GLVCLIMAQIIGNTIIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTLLISW 115
           GLVCLIMAQIIG+T+I           HSY PKEHRKSCSVK+PLLS  LLISW
Sbjct: 61  GLVCLIMAQIIGSTLIY----------HSYWPKEHRKSCSVKKPLLSIALLISW 104

BLAST of HG10013861 vs. ExPASy TrEMBL
Match: A0A0A0L099 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G247410 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 3.0e-39
Identity = 87/114 (76.32%), Postives = 96/114 (84.21%), Query Frame = 0

Query: 1   MEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVG 60
           ME P SSSFVISFS+VA+L LASFASC+AAEFNRTKK+DLKLN +LCFLPESEAFKLG+G
Sbjct: 56  MESPSSSSFVISFSVVAILTLASFASCMAAEFNRTKKEDLKLNAKLCFLPESEAFKLGIG 115

Query: 61  GLVCLIMAQIIGNTIIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTLLISW 115
           GL+CL          IMAQIIG T+ICHSY PKEHRKSCSVK+PLLS  LLISW
Sbjct: 116 GLLCL----------IMAQIIGTTLICHSYWPKEHRKSCSVKKPLLSIALLISW 159

BLAST of HG10013861 vs. ExPASy TrEMBL
Match: A0A6J1II23 (uncharacterized protein LOC111477105 OS=Cucurbita maxima OX=3661 GN=LOC111477105 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.3e-38
Identity = 92/114 (80.70%), Postives = 95/114 (83.33%), Query Frame = 0

Query: 1   MEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVG 60
           ME P  SSFVISFSIVAVL LASFASC+AAEFNRTKKKDLKLNGR CFLPESEAFKLGV 
Sbjct: 1   MENP-PSSFVISFSIVAVLTLASFASCMAAEFNRTKKKDLKLNGRFCFLPESEAFKLGVA 60

Query: 61  GLVCLIMAQIIGNTIIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTLLISW 115
           G+VCL          IMA IIGNTIICH+Y PKEHRKSCSVKRPLL TTLLISW
Sbjct: 61  GIVCL----------IMAHIIGNTIICHTYWPKEHRKSCSVKRPLL-TTLLISW 102

BLAST of HG10013861 vs. TAIR 10
Match: AT1G31720.1 (Protein of unknown function (DUF1218) )

HSP 1 Score: 61.6 bits (148), Expect = 5.0e-10
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 0

Query: 13 FSIVAVLNLASFASCIAAEFNRTKK----------KDLKLNGRLCFLPESEAFKLGVGGL 72
          F  + +  LA+F  C++AEF + K           KDLK +G  C+LPE+ AF LG+  L
Sbjct: 19 FMFIFLFGLAAFFLCLSAEFQKAKALLRAQVFLKGKDLKWDGESCYLPENRAFGLGIAAL 78

Query: 73 VCLIMAQIIGNTII 77
          VC+ +AQI+GN +I
Sbjct: 79 VCVSVAQIVGNVVI 92

BLAST of HG10013861 vs. TAIR 10
Match: AT4G19370.1 (Protein of unknown function (DUF1218) )

HSP 1 Score: 61.6 bits (148), Expect = 5.0e-10
Identity = 37/104 (35.58%), Postives = 55/104 (52.88%), Query Frame = 0

Query: 13  FSIVAVLNLASFASCIAAEFNRTKKKDLKLN-GRLCFLPESEAFKLGVGGLVCLIMAQII 72
           +S+V  L L SF +C AAEF RT+K+D++ +  R C++P S AF LG   ++C  +AQI+
Sbjct: 7   YSVVFSLGLVSFITCFAAEFKRTQKEDIRWDTERNCYVPGSHAFGLGSAAVLCFCLAQIV 66

Query: 73  GNTIIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTLLISWS 116
           GN ++           H    K           L +  LL+SWS
Sbjct: 67  GNIVVFRN--------HRTRTKREDGYKITDLTLPTVLLLLSWS 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038896171.13.3e-4080.70protein MODIFYING WALL LIGNIN-1 [Benincasa hispida][more]
XP_022937014.13.3e-4082.46uncharacterized protein LOC111443438 [Cucurbita moschata][more]
XP_023535227.13.3e-4082.46uncharacterized protein LOC111796718 [Cucurbita pepo subsp. pepo] >KAG6591859.1 ... [more]
KAG6608021.15.6e-4080.00Protein MODIFYING WALL LIGNIN-1, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022940987.15.6e-4080.00uncharacterized protein LOC111446405 [Cucurbita moschata] >XP_022940988.1 unchar... [more]
Match NameE-valueIdentityDescription
O657087.0e-0935.58Protein MODIFYING WALL LIGNIN-2 OS=Arabidopsis thaliana OX=3702 GN=MWL2 PE=2 SV=... [more]
A2RVU11.6e-0842.25Protein MODIFYING WALL LIGNIN-1 OS=Arabidopsis thaliana OX=3702 GN=MWL1 PE=1 SV=... [more]
Match NameE-valueIdentityDescription
A0A6J1F9Y81.6e-4082.46uncharacterized protein LOC111443438 OS=Cucurbita moschata OX=3662 GN=LOC1114434... [more]
A0A6J1FQT72.7e-4080.00uncharacterized protein LOC111446405 OS=Cucurbita moschata OX=3662 GN=LOC1114464... [more]
A0A1S3B9G01.8e-3978.07uncharacterized protein LOC103487629 OS=Cucumis melo OX=3656 GN=LOC103487629 PE=... [more]
A0A0A0L0993.0e-3976.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G247410 PE=4 SV=1[more]
A0A6J1II233.3e-3880.70uncharacterized protein LOC111477105 OS=Cucurbita maxima OX=3661 GN=LOC111477105... [more]
Match NameE-valueIdentityDescription
AT1G31720.15.0e-1041.89Protein of unknown function (DUF1218) [more]
AT4G19370.15.0e-1035.58Protein of unknown function (DUF1218) [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31769OS07G0462200 PROTEIN-RELATEDcoord: 76..114
NoneNo IPR availablePANTHERPTHR31769:SF6PROTEIN MODIFYING WALL LIGNIN-1coord: 76..114
NoneNo IPR availablePANTHERPTHR31769:SF6PROTEIN MODIFYING WALL LIGNIN-1coord: 7..77
NoneNo IPR availablePANTHERPTHR31769OS07G0462200 PROTEIN-RELATEDcoord: 7..77
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..27
score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10013861.1HG10013861.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane