HG10013856 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10013856
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	NDR1/HIN1-like protein 12
Location	Chr02: 5440096 .. 5440701 (-)
RNA-Seq Expression	HG10013856
Synteny	HG10013856

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACCAAATTTCCTATCCAGTCTAAAGCGACATACTCATCCTCTAATTTGGATTGCCGGCATAATCTGCGCCGCCATAGCTCTTGCAGTGATAATCGCAGGCATCGTCATCTTCATCGGCTATGTGACGATCCGCCCTAGGGTACCTTCAATCAGTGTAACCGACGGACATCTCGACAGAATCCGAAGCAGCAGAACTGGATTGCTTGAAATCCAGATGAAGATCGTCGTCCGAGCCGAGAATCAAAATGCTAGGGCACACGCAAGCTTTTCACATACCGATTTCGTCCTGCTTTTTGAAGGCATAGAAATCGCATCACTAGTGGCTCACCGGCCGTTCAAAGTAAACAAAATGAGTTACCTGGATTTGCATTTCTTAGTGGAATCGTCGGCGATTCCCCTCAATCCGACTCAGATGCAACATCTAAGCTGGTCGCTGAAGAGGGATTTGATGCAATTCGATCTGAGAGGAAGCTCTAGAACTCGATGGCGAGTTGGGGTTTTGGGACCGCTCAAGTTTTGGTGCCGTTTGAACTGCCATCTCAGGTTTTACCCGCACAATGGAAGCTACGTTCCCGCGCCTTGTTCTTCAAATCAGAAGTAA

mRNA sequence

ATGCCACCAAATTTCCTATCCAGTCTAAAGCGACATACTCATCCTCTAATTTGGATTGCCGGCATAATCTGCGCCGCCATAGCTCTTGCAGTGATAATCGCAGGCATCGTCATCTTCATCGGCTATGTGACGATCCGCCCTAGGGTACCTTCAATCAGTGTAACCGACGGACATCTCGACAGAATCCGAAGCAGCAGAACTGGATTGCTTGAAATCCAGATGAAGATCGTCGTCCGAGCCGAGAATCAAAATGCTAGGGCACACGCAAGCTTTTCACATACCGATTTCGTCCTGCTTTTTGAAGGCATAGAAATCGCATCACTAGTGGCTCACCGGCCGTTCAAAGTAAACAAAATGAGTTACCTGGATTTGCATTTCTTAGTGGAATCGTCGGCGATTCCCCTCAATCCGACTCAGATGCAACATCTAAGCTGGTCGCTGAAGAGGGATTTGATGCAATTCGATCTGAGAGGAAGCTCTAGAACTCGATGGCGAGTTGGGGTTTTGGGACCGCTCAAGTTTTGGTGCCGTTTGAACTGCCATCTCAGGTTTTACCCGCACAATGGAAGCTACGTTCCCGCGCCTTGTTCTTCAAATCAGAAGTAA

Coding sequence (CDS)

ATGCCACCAAATTTCCTATCCAGTCTAAAGCGACATACTCATCCTCTAATTTGGATTGCCGGCATAATCTGCGCCGCCATAGCTCTTGCAGTGATAATCGCAGGCATCGTCATCTTCATCGGCTATGTGACGATCCGCCCTAGGGTACCTTCAATCAGTGTAACCGACGGACATCTCGACAGAATCCGAAGCAGCAGAACTGGATTGCTTGAAATCCAGATGAAGATCGTCGTCCGAGCCGAGAATCAAAATGCTAGGGCACACGCAAGCTTTTCACATACCGATTTCGTCCTGCTTTTTGAAGGCATAGAAATCGCATCACTAGTGGCTCACCGGCCGTTCAAAGTAAACAAAATGAGTTACCTGGATTTGCATTTCTTAGTGGAATCGTCGGCGATTCCCCTCAATCCGACTCAGATGCAACATCTAAGCTGGTCGCTGAAGAGGGATTTGATGCAATTCGATCTGAGAGGAAGCTCTAGAACTCGATGGCGAGTTGGGGTTTTGGGACCGCTCAAGTTTTGGTGCCGTTTGAACTGCCATCTCAGGTTTTACCCGCACAATGGAAGCTACGTTCCCGCGCCTTGTTCTTCAAATCAGAAGTAA

Protein sequence

MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLFEGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHLRFYPHNGSYVPAPCSSNQK

Homology

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BLAST of HG10013856 vs. NCBI nr
Match: XP_038896622.1 (uncharacterized protein LOC120084885 [Benincasa hispida])

HSP 1 Score: 394.8 bits (1013), Expect = 4.4e-106
Identity = 191/201 (95.02%), Postives = 197/201 (98.01%), Query Frame = 0


Query: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLD 60
           MPPNFLSS+KRHTHPLIWIAGIICA IALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLD
Sbjct: 1   MPPNFLSSIKRHTHPLIWIAGIICATIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLD 60

Query: 61  RIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLFEGIEIASLVAHRPFKVNKMS 120
           RIRSSRTGLLE+QMKIVVRAENQNARAHASFS TDFVLLF+GIEIASLVAHRPFKVNKMS
Sbjct: 61  RIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLFDGIEIASLVAHRPFKVNKMS 120

Query: 121 YLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNC 180
           YLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDL+GSSRTRWRVG+LGPLKFWCRLNC
Sbjct: 121 YLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLKGSSRTRWRVGILGPLKFWCRLNC 180

Query: 181 HLRFYPHNGSYVPAPCSSNQK 202
           HLRFYP NGSY+PAPCSS QK
Sbjct: 181 HLRFYPRNGSYIPAPCSSRQK 201

[Close]

BLAST of HG10013856 vs. NCBI nr
Match: XP_022940744.1 (uncharacterized protein LOC111446247 [Cucurbita moschata] >KAG6608016.1 hypothetical protein SDJN03_01358, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031640.1 hypothetical protein SDJN02_05681, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 393.3 bits (1009), Expect = 1.3e-105
Identity = 190/201 (94.53%), Postives = 197/201 (98.01%), Query Frame = 0


Query: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLD 60
           MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVP+ISVTDGHLD
Sbjct: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLD 60

Query: 61  RIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLFEGIEIASLVAHRPFKVNKMS 120
           RIRSSRTGLLE+QMKIVVRAENQNARAHASFSHTDFVL+F+GIEIASLVAHRPFKVNKMS
Sbjct: 61  RIRSSRTGLLEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 120

Query: 121 YLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNC 180
           YLDLHFLVESSAIPLNPTQMQHL WSLKR+LMQFDL+GSSRTRWRVGVLGPLKFWCRLNC
Sbjct: 121 YLDLHFLVESSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC 180

Query: 181 HLRFYPHNGSYVPAPCSSNQK 202
           HLRFYP NGSY+PAPCSS  K
Sbjct: 181 HLRFYPRNGSYIPAPCSSRDK 201

[Close]

BLAST of HG10013856 vs. NCBI nr
Match: KAA0052257.1 (NDR1/HIN1-like protein 12 [Cucumis melo var. makuwa] >TYK01822.1 NDR1/HIN1-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 382.5 bits (981), Expect = 2.3e-102
Identity = 185/201 (92.04%), Postives = 195/201 (97.01%), Query Frame = 0


Query: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLD 60
           MPPNFLSSLKRHTHPLIWIAGIICA IALAVI+AGIVIFIGYVTIRPRVPSISVTDGHLD
Sbjct: 1   MPPNFLSSLKRHTHPLIWIAGIICATIALAVIVAGIVIFIGYVTIRPRVPSISVTDGHLD 60

Query: 61  RIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLFEGIEIASLVAHRPFKVNKMS 120
           RIRSSRTGLLE+QMKIVVRAENQNA+AHASFS TDFVLLF+GIEIASLVAHRPFKVNKMS
Sbjct: 61  RIRSSRTGLLEVQMKIVVRAENQNAKAHASFSKTDFVLLFDGIEIASLVAHRPFKVNKMS 120

Query: 121 YLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNC 180
           YLDLHFLVESSAIPL+ TQMQHLSWSLKR+L+QFDL+GSSRTRWRVG+LGPLKFWCRLNC
Sbjct: 121 YLDLHFLVESSAIPLDSTQMQHLSWSLKRNLIQFDLKGSSRTRWRVGILGPLKFWCRLNC 180

Query: 181 HLRFYPHNGSYVPAPCSSNQK 202
           HLRF P NGSY+P PCSSNQK
Sbjct: 181 HLRFLPRNGSYIPMPCSSNQK 201

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BLAST of HG10013856 vs. NCBI nr
Match: KGN53998.2 (hypothetical protein Csa_011831 [Cucumis sativus])

HSP 1 Score: 378.6 bits (971), Expect = 3.3e-101
Identity = 183/201 (91.04%), Postives = 194/201 (96.52%), Query Frame = 0


Query: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLD 60
           MPPNFLSSLKRHTHPLIWIAGIICA IALAVIIAGIVIFIGYVTIRPRVPSISVTDGHL+
Sbjct: 538 MPPNFLSSLKRHTHPLIWIAGIICATIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLE 597

Query: 61  RIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLFEGIEIASLVAHRPFKVNKMS 120
           RIRSSRTGLLE+QMKIVVRAENQNA+AHA FS TDFVLLF+GIEIASLVAHRPFKVNKM+
Sbjct: 598 RIRSSRTGLLEVQMKIVVRAENQNAKAHAGFSKTDFVLLFDGIEIASLVAHRPFKVNKMN 657

Query: 121 YLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNC 180
           YLDLHFLVESSAIPL+ TQMQHLSWSLKRDL+QFDL+GSSRTRWRVGVLGPLKFWCRL+C
Sbjct: 658 YLDLHFLVESSAIPLDSTQMQHLSWSLKRDLIQFDLKGSSRTRWRVGVLGPLKFWCRLDC 717

Query: 181 HLRFYPHNGSYVPAPCSSNQK 202
           HLRF+P NGSY+P PCSS QK
Sbjct: 718 HLRFFPRNGSYIPTPCSSKQK 738

[Close]

BLAST of HG10013856 vs. NCBI nr
Match: XP_022135525.1 (uncharacterized protein LOC111007456 [Momordica charantia])

HSP 1 Score: 377.1 bits (967), Expect = 9.5e-101
Identity = 184/201 (91.54%), Postives = 192/201 (95.52%), Query Frame = 0


Query: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLD 60
           MPP FLSSLKRHTHPLIWIAGIICA IALAVII GIVIFIGYVTIRPRVPSISVTDGHLD
Sbjct: 1   MPPKFLSSLKRHTHPLIWIAGIICATIALAVIIGGIVIFIGYVTIRPRVPSISVTDGHLD 60

Query: 61  RIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLFEGIEIASLVAHRPFKVNKMS 120
           RIRSSRTGLLE+QMKIVVRAENQNA+AHASFS TDFVL+F+GIEIASLVA RPFKV+KMS
Sbjct: 61  RIRSSRTGLLEVQMKIVVRAENQNAKAHASFSQTDFVLIFDGIEIASLVARRPFKVSKMS 120

Query: 121 YLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNC 180
           YLDLHFLVESSAIPLNPTQM HLSWSLKR+LMQFDL+GSSRTRWRVGVLGPLKFWCRLNC
Sbjct: 121 YLDLHFLVESSAIPLNPTQMDHLSWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC 180

Query: 181 HLRFYPHNGSYVPAPCSSNQK 202
           HLRF+P NGSYVPAPCSS  K
Sbjct: 181 HLRFHPRNGSYVPAPCSSKGK 201

[Close]

BLAST of HG10013856 vs. ExPASy TrEMBL
Match: A0A6J1FL61 (uncharacterized protein LOC111446247 OS=Cucurbita moschata OX=3662 GN=LOC111446247 PE=4 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 6.2e-106
Identity = 190/201 (94.53%), Postives = 197/201 (98.01%), Query Frame = 0


Query: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLD 60
           MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVP+ISVTDGHLD
Sbjct: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLD 60

Query: 61  RIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLFEGIEIASLVAHRPFKVNKMS 120
           RIRSSRTGLLE+QMKIVVRAENQNARAHASFSHTDFVL+F+GIEIASLVAHRPFKVNKMS
Sbjct: 61  RIRSSRTGLLEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 120

Query: 121 YLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNC 180
           YLDLHFLVESSAIPLNPTQMQHL WSLKR+LMQFDL+GSSRTRWRVGVLGPLKFWCRLNC
Sbjct: 121 YLDLHFLVESSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC 180

Query: 181 HLRFYPHNGSYVPAPCSSNQK 202
           HLRFYP NGSY+PAPCSS  K
Sbjct: 181 HLRFYPRNGSYIPAPCSSRDK 201

[Close]

BLAST of HG10013856 vs. ExPASy TrEMBL
Match: A0A5D3BSN8 (NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00630 PE=4 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 1.1e-102
Identity = 185/201 (92.04%), Postives = 195/201 (97.01%), Query Frame = 0


Query: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLD 60
           MPPNFLSSLKRHTHPLIWIAGIICA IALAVI+AGIVIFIGYVTIRPRVPSISVTDGHLD
Sbjct: 1   MPPNFLSSLKRHTHPLIWIAGIICATIALAVIVAGIVIFIGYVTIRPRVPSISVTDGHLD 60

Query: 61  RIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLFEGIEIASLVAHRPFKVNKMS 120
           RIRSSRTGLLE+QMKIVVRAENQNA+AHASFS TDFVLLF+GIEIASLVAHRPFKVNKMS
Sbjct: 61  RIRSSRTGLLEVQMKIVVRAENQNAKAHASFSKTDFVLLFDGIEIASLVAHRPFKVNKMS 120

Query: 121 YLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNC 180
           YLDLHFLVESSAIPL+ TQMQHLSWSLKR+L+QFDL+GSSRTRWRVG+LGPLKFWCRLNC
Sbjct: 121 YLDLHFLVESSAIPLDSTQMQHLSWSLKRNLIQFDLKGSSRTRWRVGILGPLKFWCRLNC 180

Query: 181 HLRFYPHNGSYVPAPCSSNQK 202
           HLRF P NGSY+P PCSSNQK
Sbjct: 181 HLRFLPRNGSYIPMPCSSNQK 201

[Close]

BLAST of HG10013856 vs. ExPASy TrEMBL
Match: A0A0A0L1I9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G242860 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 1.6e-101
Identity = 183/201 (91.04%), Postives = 194/201 (96.52%), Query Frame = 0


Query: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLD 60
           MPPNFLSSLKRHTHPLIWIAGIICA IALAVIIAGIVIFIGYVTIRPRVPSISVTDGHL+
Sbjct: 1   MPPNFLSSLKRHTHPLIWIAGIICATIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLE 60

Query: 61  RIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLFEGIEIASLVAHRPFKVNKMS 120
           RIRSSRTGLLE+QMKIVVRAENQNA+AHA FS TDFVLLF+GIEIASLVAHRPFKVNKM+
Sbjct: 61  RIRSSRTGLLEVQMKIVVRAENQNAKAHAGFSKTDFVLLFDGIEIASLVAHRPFKVNKMN 120

Query: 121 YLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNC 180
           YLDLHFLVESSAIPL+ TQMQHLSWSLKRDL+QFDL+GSSRTRWRVGVLGPLKFWCRL+C
Sbjct: 121 YLDLHFLVESSAIPLDSTQMQHLSWSLKRDLIQFDLKGSSRTRWRVGVLGPLKFWCRLDC 180

Query: 181 HLRFYPHNGSYVPAPCSSNQK 202
           HLRF+P NGSY+P PCSS QK
Sbjct: 181 HLRFFPRNGSYIPTPCSSKQK 201

[Close]

BLAST of HG10013856 vs. ExPASy TrEMBL
Match: A0A6J1C199 (uncharacterized protein LOC111007456 OS=Momordica charantia OX=3673 GN=LOC111007456 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 4.6e-101
Identity = 184/201 (91.54%), Postives = 192/201 (95.52%), Query Frame = 0


Query: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLD 60
           MPP FLSSLKRHTHPLIWIAGIICA IALAVII GIVIFIGYVTIRPRVPSISVTDGHLD
Sbjct: 1   MPPKFLSSLKRHTHPLIWIAGIICATIALAVIIGGIVIFIGYVTIRPRVPSISVTDGHLD 60

Query: 61  RIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLFEGIEIASLVAHRPFKVNKMS 120
           RIRSSRTGLLE+QMKIVVRAENQNA+AHASFS TDFVL+F+GIEIASLVA RPFKV+KMS
Sbjct: 61  RIRSSRTGLLEVQMKIVVRAENQNAKAHASFSQTDFVLIFDGIEIASLVARRPFKVSKMS 120

Query: 121 YLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNC 180
           YLDLHFLVESSAIPLNPTQM HLSWSLKR+LMQFDL+GSSRTRWRVGVLGPLKFWCRLNC
Sbjct: 121 YLDLHFLVESSAIPLNPTQMDHLSWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC 180

Query: 181 HLRFYPHNGSYVPAPCSSNQK 202
           HLRF+P NGSYVPAPCSS  K
Sbjct: 181 HLRFHPRNGSYVPAPCSSKGK 201

[Close]

BLAST of HG10013856 vs. ExPASy TrEMBL
Match: A0A6J1FEV3 (uncharacterized protein LOC111443437 OS=Cucurbita moschata OX=3662 GN=LOC111443437 PE=4 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 1.7e-100
Identity = 182/201 (90.55%), Postives = 190/201 (94.53%), Query Frame = 0


Query: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLD 60
           MPPNFLSSLKRHTHPLIWIAGIICA IA+AVIIAGIVIFIGYVTIRP VPSISVTDGHLD
Sbjct: 13  MPPNFLSSLKRHTHPLIWIAGIICATIAVAVIIAGIVIFIGYVTIRPTVPSISVTDGHLD 72

Query: 61  RIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLFEGIEIASLVAHRPFKVNKMS 120
           RIR+SR GLLE+QMKIVVRAENQNARA ASFSHTDFVL+F+GIEIASLVAHRPFKVNKMS
Sbjct: 73  RIRNSRIGLLEVQMKIVVRAENQNARAQASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 132

Query: 121 YLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNC 180
           YLDLHFLVESSAIPLNP QMQHLSWSL R+LMQFDL+GSSRTRWRVGVLGPLKFWC LNC
Sbjct: 133 YLDLHFLVESSAIPLNPMQMQHLSWSLNRNLMQFDLKGSSRTRWRVGVLGPLKFWCHLNC 192

Query: 181 HLRFYPHNGSYVPAPCSSNQK 202
            LRFYP NGSY+PAPCSS  K
Sbjct: 193 RLRFYPRNGSYIPAPCSSKDK 213

[Close]

BLAST of HG10013856 vs. TAIR 10
Match: AT5G45320.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 253 Blast hits to 253 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 253; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 200.3 bits (508), Expect = 1.5e-51
Identity = 100/192 (52.08%), Postives = 135/192 (70.31%), Query Frame = 0


Query: 11  RH-THPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGL 70
           RH T P IW A IICA I++ VI+ GI++F+GY+ I PRVP ISV D HLD ++    G+
Sbjct: 7   RHGTSPFIWCAAIICAIISIVVIVGGIIVFVGYLVIHPRVPIISVADAHLDFLKYDIVGV 66

Query: 71  LEIQMKIVVRAENQNARAHASFSHTDFVLLFEGIEIASLVAHRPFKVNKMSYLDLHFLVE 130
           L+ Q+ IV+R EN NA+AHA F  T+F L +EG  IA L A   F+V K   + L +LV+
Sbjct: 67  LQTQLTIVIRVENDNAKAHALFDETEFKLSYEGKPIAILKAPE-FEVVKEKSMFLPYLVQ 126

Query: 131 SSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHLRFYPHNG 190
           S  IPLNPT MQ + +++K+D++ F+L+G SRTRWRVG LG +KF C L+C LRF P + 
Sbjct: 127 SYPIPLNPTMMQAVDYAVKKDVITFELKGGSRTRWRVGPLGSVKFECNLSCQLRFRPSDH 186

Query: 191 SYVPAPCSSNQK 202
           SY+P+PC+S  K
Sbjct: 187 SYIPSPCTSAHK 197

[Close]

BLAST of HG10013856 vs. TAIR 10
Match: AT1G13050.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 538 Blast hits to 510 proteins in 88 species: Archae - 0; Bacteria - 23; Metazoa - 81; Fungi - 36; Plants - 361; Viruses - 8; Other Eukaryotes - 29 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-10
Identity = 45/173 (26.01%), Postives = 78/173 (45.09%), Query Frame = 0


Query: 11  RHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLL 70
           + T P+   A I CA + + +I++G+++ + Y+  RPR P   ++   L+        +L
Sbjct: 128 KRTKPMTLPATICCAILLIVLILSGLILLLVYLANRPRSPYFDISAATLNTANLDMGYVL 187

Query: 71  EIQMKIVVRAENQNARAHASFSHTDFVLLFEGIEIASLVAH-RPFKVNKMSYLDLHFLVE 130
              + +VV   N + ++   FS+  F L F    IA+   H  PF V K   +   F + 
Sbjct: 188 NGDLAVVVNFTNPSKKSSVDFSYVMFELYFYNTLIAT--EHIEPFIVPKGMSMFTSFHLV 247

Query: 131 SSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHL 183
           SS + +   Q Q L   L    +  +LRG+   R  +G L    +W    C +
Sbjct: 248 SSQVQIQMIQSQDLQLQLGTGPVLLNLRGTFHARSNLGSLMRYSYWLHTQCSI 298

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BLAST of HG10013856 vs. TAIR 10
Match: AT1G13050.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 260 Blast hits to 259 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 260; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 3.1e-09
Identity = 43/164 (26.22%), Postives = 74/164 (45.12%), Query Frame = 0


Query: 20  AGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEIQMKIVVR 79
           A I CA + + +I++G+++ + Y+  RPR P   ++   L+        +L   + +VV 
Sbjct: 5   ATICCAILLIVLILSGLILLLVYLANRPRSPYFDISAATLNTANLDMGYVLNGDLAVVVN 64

Query: 80  AENQNARAHASFSHTDFVLLFEGIEIASLVAH-RPFKVNKMSYLDLHFLVESSAIPLNPT 139
             N + ++   FS+  F L F    IA+   H  PF V K   +   F + SS + +   
Sbjct: 65  FTNPSKKSSVDFSYVMFELYFYNTLIAT--EHIEPFIVPKGMSMFTSFHLVSSQVQIQMI 124

Query: 140 QMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHL 183
           Q Q L   L    +  +LRG+   R  +G L    +W    C +
Sbjct: 125 QSQDLQLQLGTGPVLLNLRGTFHARSNLGSLMRYSYWLHTQCSI 166

The following BLAST results are available for this feature:

BLAST of HG10013856 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896622.1	4.4e-106	95.02	uncharacterized protein LOC120084885 [Benincasa hispida]	[more]
XP_022940744.1	1.3e-105	94.53	uncharacterized protein LOC111446247 [Cucurbita moschata] >KAG6608016.1 hypothet...	[more]
KAA0052257.1	2.3e-102	92.04	NDR1/HIN1-like protein 12 [Cucumis melo var. makuwa] >TYK01822.1 NDR1/HIN1-like ...	[more]
KGN53998.2	3.3e-101	91.04	hypothetical protein Csa_011831 [Cucumis sativus]	[more]
XP_022135525.1	9.5e-101	91.54	uncharacterized protein LOC111007456 [Momordica charantia]	[more]

BLAST of HG10013856 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10013856 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FL61	6.2e-106	94.53	uncharacterized protein LOC111446247 OS=Cucurbita moschata OX=3662 GN=LOC1114462...	[more]
A0A5D3BSN8	1.1e-102	92.04	NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0L1I9	1.6e-101	91.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G242860 PE=4 SV=1	[more]
A0A6J1C199	4.6e-101	91.54	uncharacterized protein LOC111007456 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1FEV3	1.7e-100	90.55	uncharacterized protein LOC111443437 OS=Cucurbita moschata OX=3662 GN=LOC1114434...	[more]

BLAST of HG10013856 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45320.1	1.5e-51	52.08	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G13050.1	2.8e-10	26.01	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G13050.2	3.1e-09	26.22	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31852	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 9..200
None	No IPR available	PANTHER	PTHR31852:SF9	LATE EMBRYOGENESIS ABUNDANT PROTEIN	coord: 9..200

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10013856.1	HG10013856.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0006898	receptor-mediated endocytosis
cellular_component	GO:0030124	AP-4 adaptor complex
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0140312	cargo adaptor activity