HG10013736 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10013736
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	50S ribosomal protein L13
Location	Chr02: 4317300 .. 4320056 (-)
RNA-Seq Expression	HG10013736
Synteny	HG10013736

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATGCTCTGTGCTTCCTCCTCTACACCCACTTTCTCTTTACATTCCACTCTTTTCAATGGAAGCACAAGTAACAGAGGCATTCCCAGAAAGTCACTCCTTGCTGGGTTTCCACTCCCACATTCAAAATCTTCTTTTCTTCTAACCCAGACCACGATTTCTCTAAACTCCAACCCCAAGAGTCCGCTCCTTCAAGTGCGAGCTCAGGAGCTGGATCGTGTCCCTTTAGAACAACGGTGGATGTTCGAGGGCGACGAGCTCGACGGCCCTGTACGTCTCTTAATCTTACAATATGTTTGTTTGTTTGCTTGCGCTAAATCTGGTAGTGAAAATGGTCTTGTAGATTTGAGACTAATTGAACTCGTTCTTCGCATAACACGCTAATGGGTTCCTTGCAAACCTAAAACGCCTATCCAATTTTGTTATCCCCAGCTTCCTATGAGCCCTCAATCATTCGTGTTCTTTTAGTTGGGTTGTTGTTTTGTTGTTCCTTTGGGGGCTACTACATCTAACTTTTGGCTTCTCCACATTGCAATTTCGCTTTCCATTAACATACTGAAGTTAATTTTTACAGAAACCATCAATAAAAAAACTGGGTACAACTGTAATTGCCCTTATAACTGAACATACAATCCTCTTTTTACTTGTTAGTTGGTAGGCCAATTTGATGCCCACTTTCTGAATTTTGAAGAATTATTTCCTGTTTTTGCTTGTTTATTTTCCCTTTTCAGATTGGATACTTAGCAGTCGTAATTCTTTTCCATTCAGGACATATGGAATAAAACATGGTACCCGAAGGCTGCAGATCATGTGAACACAGAAAAACCTTGGTATGTGGTTGATGCCACTGATAAGATTTTGGGAAGACTAGCTTCGACCATTGCCAATCATATCCGAGGGAAGGATTTGGCAACCTACACTCCAAGTGTGGATATGGGGGCTTTTGTGATTGTGGTATGTGGTTGTACTTGTACATGATGTTTTATTGTGACTTTCATAAAAAAGAATGATCTATTGTGGCTGCAATCACTACAACAGAGTTTCGGTATCAGCATCAATGAATGGTTTCCGCTTTTGTCTACTCAACTTGAACCTTCTTGCTATTTGTTTACATTTAGTTGTTTATTCACTGTCACCCATGAATTATACTTATTCTCTTGATCCTACATAGGTAAATGCAGAAAAAGTTGCGGTGTCTGGTAGAAAGAGGACACAAAAACTATACAGGAGGCATTCAGGGCGACCAGGTGGTATGACCGTAGAAACTTTTGACCAGCTACAGCAGAGAATTCCTGAAAGAATTATTGAGCATGCTGTTCGTGGTATGCTTCCAAAAGGGAGGGTAAGTGATTCGTACTACTTAAGTGCCATATTGTATTATATGCACGCAGACTGTTCTGCAAACTGAATATTTGTGGGTGATAGAATGATTGTTTAAGTTTTGAGCAACGCTTCATTTAGGAAAACTGTATCAGTTTTGTTAGAAGCTTTAGTAGGTCGGTTAAGATAGCTTTTGGTGTTTTGGTTGTTGTAGACTATTGGTTAGCTATGTTCCATCTTACAGAAGAGTTCCTCAAACTTATCACCAATGGGGTTTTACAGCTTCAGATTCATATGTAAGTTGTTCCAATGGCTCTCACATTCTGTGACATAGGATTCTAGAAGCAACGAGTTGGTGTATATGACAAATAATGGCATCTTTCAGTTTATTAGAACTAGAAGAATCTCCAATGATAAGAAAATAAAATTTCGGGTGGCCTTGTCTTCAAGAGGATTTCACAACCTGCATTGTAATTTGTGGGTTAATGGTGTGGAGGATGTGACAAGAATGAGTTGCTTGGGAAAGTTTGAAGTGTTTGAGAAACTAACATATGGTCTTTTGCTTTATTCCTTGGCTACTCTACTGGCATTCTGTTGGTTACATTTAATAGTAAAAATCTTTGACCATTTATGGTCATATTGTCACTACCAGAATCCAAGATCTGTACGGTTGATGGAGCCTGACAACTGTGTGTAAGGTGATTTCTTGGCAATTCAGGACCAGGAAAGCTAAAAAATTTGCTTTGGCAGTATATTTCGAAATCTTTTGGTTGTCTTTTGAACTACAATCATTGATTTGAAAATTTGATGCCTTCTGAATACCTAGTATATGTTATAGGATAAATTTGGGTATCAGATAACATTATCTTAAATTCAGCTCTCTAACAAGGACACAGTAAAATCTACATTAGGAAAAGGAACGACTTTTCATCTGTGGACAGCGTCTGCACAATATGTTTTCCTTTTGAATCTATTTCAAAAGAATATTAAACAGTCCTGCATCATCCTTTGAAGAATTCGTTTGTGACAAACTGGCAGTTGTTTGTGATGTGTATTCTGACGTTGGAACTTCCCGCCGTTGTCAGTGCTTTGACACGACGTGAATGAAACTTTTTTTTTTAGATTTTTCTCAAGTAGCTGTGAAGTATTTGCCTTGCAATAACAAGGCGCCTTGCTTGTAATACTGTTAACCATCTCACTTTTTATTTCATGTAAACTGCTTCATATTGTGGTGTTTAGGAATTTCCCTGTTTCCTGCCTCCATTGATGTTCCTGATAATTTATTGGCTGTTTCAAACCATGGCAATTTATGTGCAGCTTGGAAGAGCACTTTTTAACCACTTGAAGGTTTACAAAGGACCAGACCATCCACATGAGGCACAAAAGCCAGTTGAGCTGCCAATTAGGGACAAAAGGATAAACAAAGAAAGATAG

mRNA sequence

ATGGCGATGCTCTGTGCTTCCTCCTCTACACCCACTTTCTCTTTACATTCCACTCTTTTCAATGGAAGCACAAGTAACAGAGGCATTCCCAGAAAGTCACTCCTTGCTGGGTTTCCACTCCCACATTCAAAATCTTCTTTTCTTCTAACCCAGACCACGATTTCTCTAAACTCCAACCCCAAGAGTCCGCTCCTTCAAGTGCGAGCTCAGGAGCTGGATCGTGTCCCTTTAGAACAACGGTGGATGTTCGAGGGCGACGAGCTCGACGGCCCTGACATATGGAATAAAACATGGTACCCGAAGGCTGCAGATCATGTGAACACAGAAAAACCTTGGTATGTGGTTGATGCCACTGATAAGATTTTGGGAAGACTAGCTTCGACCATTGCCAATCATATCCGAGGGAAGGATTTGGCAACCTACACTCCAAGTGTGGATATGGGGGCTTTTGTGATTGTGGTAAATGCAGAAAAAGTTGCGGTGTCTGGTAGAAAGAGGACACAAAAACTATACAGGAGGCATTCAGGGCGACCAGGTGGTATGACCGTAGAAACTTTTGACCAGCTACAGCAGAGAATTCCTGAAAGAATTATTGAGCATGCTGTTCGTGGTATGCTTCCAAAAGGGAGGGAATTTCCCTGTTTCCTGCCTCCATTGATGTTCCTGATAATTTATTGGCTGTTTCAAACCATGGCAATTTATGTGCAGCTTGGAAGAGCACTTTTTAACCACTTGAAGGTTTACAAAGGACCAGACCATCCACATGAGGCACAAAAGCCAGTTGAGCTGCCAATTAGGGACAAAAGGATAAACAAAGAAAGATAG

Coding sequence (CDS)

ATGGCGATGCTCTGTGCTTCCTCCTCTACACCCACTTTCTCTTTACATTCCACTCTTTTCAATGGAAGCACAAGTAACAGAGGCATTCCCAGAAAGTCACTCCTTGCTGGGTTTCCACTCCCACATTCAAAATCTTCTTTTCTTCTAACCCAGACCACGATTTCTCTAAACTCCAACCCCAAGAGTCCGCTCCTTCAAGTGCGAGCTCAGGAGCTGGATCGTGTCCCTTTAGAACAACGGTGGATGTTCGAGGGCGACGAGCTCGACGGCCCTGACATATGGAATAAAACATGGTACCCGAAGGCTGCAGATCATGTGAACACAGAAAAACCTTGGTATGTGGTTGATGCCACTGATAAGATTTTGGGAAGACTAGCTTCGACCATTGCCAATCATATCCGAGGGAAGGATTTGGCAACCTACACTCCAAGTGTGGATATGGGGGCTTTTGTGATTGTGGTAAATGCAGAAAAAGTTGCGGTGTCTGGTAGAAAGAGGACACAAAAACTATACAGGAGGCATTCAGGGCGACCAGGTGGTATGACCGTAGAAACTTTTGACCAGCTACAGCAGAGAATTCCTGAAAGAATTATTGAGCATGCTGTTCGTGGTATGCTTCCAAAAGGGAGGGAATTTCCCTGTTTCCTGCCTCCATTGATGTTCCTGATAATTTATTGGCTGTTTCAAACCATGGCAATTTATGTGCAGCTTGGAAGAGCACTTTTTAACCACTTGAAGGTTTACAAAGGACCAGACCATCCACATGAGGCACAAAAGCCAGTTGAGCTGCCAATTAGGGACAAAAGGATAAACAAAGAAAGATAG

Protein sequence

MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNPKSPLLQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGREFPCFLPPLMFLIIYWLFQTMAIYVQLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER

Homology

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BLAST of HG10013736 vs. NCBI nr
Match: XP_004146016.1 (50S ribosomal protein L13, chloroplastic [Cucumis sativus] >KGN55030.1 hypothetical protein Csa_012763 [Cucumis sativus])

HSP 1 Score: 456.1 bits (1172), Expect = 2.2e-124
Identity = 230/274 (83.94%), Postives = 236/274 (86.13%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MAMLCASSSTPTFSLHSTL NG+TSN+  PR SLL  FPLPHSKSSFLLTQT+ISL SN 
Sbjct: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60

Query: 61  KSPLLQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           K   LQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDL TYTPSVDMGAFVIVVNAEK+AVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGREFPCFLPPLMFLIIYWLFQTMAIYVQLGRA 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGR                          LGRA
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGR--------------------------LGRA 240

Query: 241 LFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 275
           LFNHLKVYKGPDHPHEAQKPV+LPIRDKRINKER
Sbjct: 241 LFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER 248

[Close]

BLAST of HG10013736 vs. NCBI nr
Match: XP_008463780.1 (PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis melo])

HSP 1 Score: 454.5 bits (1168), Expect = 6.4e-124
Identity = 231/274 (84.31%), Postives = 235/274 (85.77%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MAMLCASSSTPTFSLHS+L NG+TSNR IP  SLL  FPLPHSKSSFLLTQTTI L SN 
Sbjct: 1   MAMLCASSSTPTFSLHSSLTNGTTSNRSIPTNSLLVAFPLPHSKSSFLLTQTTIPLTSNS 60

Query: 61  KSPLLQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           K   L+VRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KRSALRVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDL TYTPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGREFPCFLPPLMFLIIYWLFQTMAIYVQLGRA 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGR                          LGRA
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGR--------------------------LGRA 240

Query: 241 LFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 275
           LFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER
Sbjct: 241 LFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 248

[Close]

BLAST of HG10013736 vs. NCBI nr
Match: XP_022941245.1 (50S ribosomal protein L13, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 451.1 bits (1159), Expect = 7.1e-123
Identity = 229/274 (83.58%), Postives = 235/274 (85.77%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MAMLCASSST TFSLHSTL N + SNR IPR SL+AGFPLP SKSSFL TQTTI+L S P
Sbjct: 1   MAMLCASSSTATFSLHSTLNNANASNRAIPRMSLVAGFPLPQSKSSFLQTQTTITLTSKP 60

Query: 61  KSPLLQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           KS + QVRAQELDRVPLEQRWMFEGDE+DGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDL TYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGREFPCFLPPLMFLIIYWLFQTMAIYVQLGRA 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGR                          LGRA
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGR--------------------------LGRA 240

Query: 241 LFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 275
           LFNHLKVYKGPDHPHEAQKPV+LPIRDKRINKER
Sbjct: 241 LFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER 248

[Close]

BLAST of HG10013736 vs. NCBI nr
Match: XP_023524699.1 (50S ribosomal protein L13, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 450.7 bits (1158), Expect = 9.2e-123
Identity = 229/274 (83.58%), Postives = 236/274 (86.13%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MAMLCASSST TFSLHSTL NG+ SNR +PR SL+AGFPL  SKSSFL TQTTI+L S P
Sbjct: 1   MAMLCASSSTATFSLHSTLNNGNASNRALPRMSLVAGFPLVQSKSSFLQTQTTITLTSKP 60

Query: 61  KSPLLQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           KS +LQVRAQELDRVPLEQRWMFEGDE+DGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KSSVLQVRAQELDRVPLEQRWMFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDL TYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGREFPCFLPPLMFLIIYWLFQTMAIYVQLGRA 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGR                          LGRA
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGR--------------------------LGRA 240

Query: 241 LFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 275
           LFNHLKVYKGPDHPHEAQKPV+LPIRDKRINKER
Sbjct: 241 LFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER 248

[Close]

BLAST of HG10013736 vs. NCBI nr
Match: KAG6607943.1 (50S ribosomal protein L13, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 449.5 bits (1155), Expect = 2.1e-122
Identity = 228/274 (83.21%), Postives = 235/274 (85.77%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MAMLCASSST TFSLHSTL N + SNR IPR SL+AGFPLP SKSSFL TQTTI+L S P
Sbjct: 1   MAMLCASSSTATFSLHSTLNNANASNRAIPRMSLVAGFPLPQSKSSFLQTQTTITLTSKP 60

Query: 61  KSPLLQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           KS + QVRAQELDRVPLEQRWMF+GDE+DGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KSSVFQVRAQELDRVPLEQRWMFKGDEIDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDL TYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGREFPCFLPPLMFLIIYWLFQTMAIYVQLGRA 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGR                          LGRA
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGR--------------------------LGRA 240

Query: 241 LFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 275
           LFNHLKVYKGPDHPHEAQKPV+LPIRDKRINKER
Sbjct: 241 LFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER 248

[Close]

BLAST of HG10013736 vs. ExPASy Swiss-Prot
Match: Q9SYL9 (50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL13 PE=2 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 1.1e-86
Identity = 172/279 (61.65%), Postives = 198/279 (70.97%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MA+LC+SS+         L + S  + G  RKS   GF L    ++       + + +N 
Sbjct: 1   MAVLCSSSTV-------ILSSSSVKSSGSERKSPFLGFSL----TAISKPSVRVGIYANS 60

Query: 61  KSPLLQVRAQ-----ELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVV 120
           K   LQV+ +         VP  QRWMF+ +E +GPDIWN TWYPKA+DHVNT+KPW+VV
Sbjct: 61  KRG-LQVKCEAEPTTTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVV 120

Query: 121 DATDKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHS 180
           DATDKILGRLASTIANHIRGK+LA+YTPSVDMGAFVIVVNAEKVAVSG+KR QKLYRRHS
Sbjct: 121 DATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHS 180

Query: 181 GRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGREFPCFLPPLMFLIIYWLFQTMAIYV 240
           GRPGGMTVETFDQLQQRIPERI+EHAVRGMLPKGR                         
Sbjct: 181 GRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGR------------------------- 240

Query: 241 QLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 275
            LGRALFNHLKVYKGPDHPHEAQKP++LPIRDKRI  ++
Sbjct: 241 -LGRALFNHLKVYKGPDHPHEAQKPLDLPIRDKRIQLQK 241

[Close]

BLAST of HG10013736 vs. ExPASy Swiss-Prot
Match: P12629 (50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL13 PE=1 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 4.7e-77
Identity = 156/276 (56.52%), Postives = 187/276 (67.75%), Query Frame = 0


Query: 3   MLCASSST-PTFSLHSTLFNGSTSNRGI---PRKSLLAGFPLPHSKSSFLLTQTTISLNS 62
           M CASS T P+     + F  +     +   PR ++ A   +   KS+   T+ T     
Sbjct: 4   MACASSLTFPSAQTQKSFFGTNVKQTPVLSFPRPTVAAAVAVSARKSTSASTKCTEEWRQ 63

Query: 63  NPKSPLLQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDAT 122
             ++   +     +  VPL+QRWMF  +E  GPDIWN TWYPK+ADHV T+K WYVVDAT
Sbjct: 64  LKEAVKKEF---AIPHVPLDQRWMFTLEEATGPDIWNTTWYPKSADHVPTDKKWYVVDAT 123

Query: 123 DKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRP 182
           D ILGR+ASTIA HIRGK+LA+YTPSVDMGAFVIVVNA+KVAVSG+KRTQKLYRRHSGRP
Sbjct: 124 DLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRRHSGRP 183

Query: 183 GGMTVETFDQLQQRIPERIIEHAVRGMLPKGREFPCFLPPLMFLIIYWLFQTMAIYVQLG 242
           GG+  ETFDQLQ+RIPERIIEHAVRGMLPKGR                          LG
Sbjct: 184 GGLKEETFDQLQKRIPERIIEHAVRGMLPKGR--------------------------LG 243

Query: 243 RALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 275
           R LFNHLKVYKG +HPH+AQ+P++LP+RDKRI  E+
Sbjct: 244 RYLFNHLKVYKGAEHPHQAQQPIDLPLRDKRIRVEK 250

[Close]

BLAST of HG10013736 vs. ExPASy Swiss-Prot
Match: Q3MF94 (50S ribosomal protein L13 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rplM PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 2.5e-46
Identity = 100/171 (58.48%), Postives = 115/171 (67.25%), Query Frame = 0


Query: 95  NKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVV 154
           +KT+ P      + E+ WYVVDATDK LGRLAS IA  +RGK+ A YTP +D G FVIVV
Sbjct: 2   SKTYLP---PQESLERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVV 61

Query: 155 NAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGREFPC 214
           NAEKVAV+G+KRTQKLYRRHSGRPGGM  ETF +LQQR+PERI+EHAV+GMLPK      
Sbjct: 62  NAEKVAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKN----- 121

Query: 215 FLPPLMFLIIYWLFQTMAIYVQLGRALFNHLKVYKGPDHPHEAQKPVELPI 266
                                 LG+ LF  LKVY GP HPH+AQKP EL I
Sbjct: 122 ---------------------SLGKQLFTKLKVYAGPTHPHDAQKPKELNI 143

[Close]

BLAST of HG10013736 vs. ExPASy Swiss-Prot
Match: Q8YPK6 (50S ribosomal protein L13 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rplM PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 7.2e-46
Identity = 99/171 (57.89%), Postives = 115/171 (67.25%), Query Frame = 0


Query: 95  NKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVV 154
           +KT+ P      + E+ WYVVDATDK LGRLAS IA  +RGK+ A YTP +D G FVIVV
Sbjct: 2   SKTYLP---PQESLERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVV 61

Query: 155 NAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGREFPC 214
           NA+KVAV+G+KRTQKLYRRHSGRPGGM  ETF +LQQR+PERI+EHAV+GMLPK      
Sbjct: 62  NAKKVAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKN----- 121

Query: 215 FLPPLMFLIIYWLFQTMAIYVQLGRALFNHLKVYKGPDHPHEAQKPVELPI 266
                                 LG+ LF  LKVY GP HPH+AQKP EL I
Sbjct: 122 ---------------------SLGKQLFTKLKVYAGPTHPHDAQKPKELNI 143

[Close]

BLAST of HG10013736 vs. ExPASy Swiss-Prot
Match: B8HMT1 (50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rplM PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 4.7e-45
Identity = 97/172 (56.40%), Postives = 113/172 (65.70%), Query Frame = 0


Query: 95  NKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVV 154
           NKT+ P      + E  WYVVDAT++ LGRLA+ IA  +RGK    YTPS+D G FVIVV
Sbjct: 2   NKTYLPST---TSLEPKWYVVDATEQHLGRLATQIAMILRGKTKPIYTPSMDTGDFVIVV 61

Query: 155 NAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGREFPC 214
           NAEKVAV+G+KRTQK+YRRHSGRPGGM  ETF +LQ R+PERIIEHAV+GMLPK      
Sbjct: 62  NAEKVAVTGKKRTQKIYRRHSGRPGGMKTETFAKLQSRLPERIIEHAVKGMLPKN----- 121

Query: 215 FLPPLMFLIIYWLFQTMAIYVQLGRALFNHLKVYKGPDHPHEAQKPVELPIR 267
                                 LGR LF  LKVY GPDHPH+AQKP  L ++
Sbjct: 122 ---------------------TLGRNLFTKLKVYAGPDHPHQAQKPEVLTLK 144

[Close]

BLAST of HG10013736 vs. ExPASy TrEMBL
Match: A0A0A0KZG1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G623380 PE=3 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 1.1e-124
Identity = 230/274 (83.94%), Postives = 236/274 (86.13%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MAMLCASSSTPTFSLHSTL NG+TSN+  PR SLL  FPLPHSKSSFLLTQT+ISL SN 
Sbjct: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60

Query: 61  KSPLLQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           K   LQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDL TYTPSVDMGAFVIVVNAEK+AVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGREFPCFLPPLMFLIIYWLFQTMAIYVQLGRA 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGR                          LGRA
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGR--------------------------LGRA 240

Query: 241 LFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 275
           LFNHLKVYKGPDHPHEAQKPV+LPIRDKRINKER
Sbjct: 241 LFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER 248

[Close]

BLAST of HG10013736 vs. ExPASy TrEMBL
Match: A0A1S3CK07 (50S ribosomal protein L13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501842 PE=3 SV=1)

HSP 1 Score: 454.5 bits (1168), Expect = 3.1e-124
Identity = 231/274 (84.31%), Postives = 235/274 (85.77%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MAMLCASSSTPTFSLHS+L NG+TSNR IP  SLL  FPLPHSKSSFLLTQTTI L SN 
Sbjct: 1   MAMLCASSSTPTFSLHSSLTNGTTSNRSIPTNSLLVAFPLPHSKSSFLLTQTTIPLTSNS 60

Query: 61  KSPLLQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           K   L+VRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KRSALRVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDL TYTPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGREFPCFLPPLMFLIIYWLFQTMAIYVQLGRA 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGR                          LGRA
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGR--------------------------LGRA 240

Query: 241 LFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 275
           LFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER
Sbjct: 241 LFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 248

[Close]

BLAST of HG10013736 vs. ExPASy TrEMBL
Match: A0A6J1FT16 (50S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446606 PE=3 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 3.4e-123
Identity = 229/274 (83.58%), Postives = 235/274 (85.77%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MAMLCASSST TFSLHSTL N + SNR IPR SL+AGFPLP SKSSFL TQTTI+L S P
Sbjct: 1   MAMLCASSSTATFSLHSTLNNANASNRAIPRMSLVAGFPLPQSKSSFLQTQTTITLTSKP 60

Query: 61  KSPLLQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           KS + QVRAQELDRVPLEQRWMFEGDE+DGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDL TYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGREFPCFLPPLMFLIIYWLFQTMAIYVQLGRA 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGR                          LGRA
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGR--------------------------LGRA 240

Query: 241 LFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 275
           LFNHLKVYKGPDHPHEAQKPV+LPIRDKRINKER
Sbjct: 241 LFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER 248

[Close]

BLAST of HG10013736 vs. ExPASy TrEMBL
Match: A0A6J1F6Z3 (50S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442721 PE=3 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 3.8e-122
Identity = 229/274 (83.58%), Postives = 233/274 (85.04%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MAMLCASSSTPTF +HSTL NGS SNRGIPRKS + GFPLP SKS  L TQTTI+LNS  
Sbjct: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60

Query: 61  KSPLLQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           KS  +QVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKA DHVNTEKPWYVVDATDK
Sbjct: 61  KSSGVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDL TYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGREFPCFLPPLMFLIIYWLFQTMAIYVQLGRA 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGR                          LGRA
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGR--------------------------LGRA 240

Query: 241 LFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 275
           LFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER
Sbjct: 241 LFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 248

[Close]

BLAST of HG10013736 vs. ExPASy TrEMBL
Match: A0A6J1IW42 (50S ribosomal protein L13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480461 PE=3 SV=1)

HSP 1 Score: 447.2 bits (1149), Expect = 4.9e-122
Identity = 227/274 (82.85%), Postives = 233/274 (85.04%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MAMLCASSST TFSLHST  N + SNR IPRKSL+AGFPLP SKSSFL TQTTI+L S P
Sbjct: 1   MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKP 60

Query: 61  KSPLLQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           KS + QVRAQELDRVPLEQRWMFEGDE+DGPDIWN TWYPKA DHVNTEKPWYVVDATDK
Sbjct: 61  KSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYPKAVDHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDL TYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGREFPCFLPPLMFLIIYWLFQTMAIYVQLGRA 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGR                          LGRA
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGR--------------------------LGRA 240

Query: 241 LFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 275
           LFNHLKVYKGPDHPHEAQKPV+LPIRDKRINKER
Sbjct: 241 LFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER 248

[Close]

BLAST of HG10013736 vs. TAIR 10
Match: AT1G78630.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 321.2 bits (822), Expect = 7.9e-88
Identity = 172/279 (61.65%), Postives = 198/279 (70.97%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MA+LC+SS+         L + S  + G  RKS   GF L    ++       + + +N 
Sbjct: 1   MAVLCSSSTV-------ILSSSSVKSSGSERKSPFLGFSL----TAISKPSVRVGIYANS 60

Query: 61  KSPLLQVRAQ-----ELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVV 120
           K   LQV+ +         VP  QRWMF+ +E +GPDIWN TWYPKA+DHVNT+KPW+VV
Sbjct: 61  KRG-LQVKCEAEPTTTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVV 120

Query: 121 DATDKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHS 180
           DATDKILGRLASTIANHIRGK+LA+YTPSVDMGAFVIVVNAEKVAVSG+KR QKLYRRHS
Sbjct: 121 DATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHS 180

Query: 181 GRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGREFPCFLPPLMFLIIYWLFQTMAIYV 240
           GRPGGMTVETFDQLQQRIPERI+EHAVRGMLPKGR                         
Sbjct: 181 GRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGR------------------------- 240

Query: 241 QLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 275
            LGRALFNHLKVYKGPDHPHEAQKP++LPIRDKRI  ++
Sbjct: 241 -LGRALFNHLKVYKGPDHPHEAQKPLDLPIRDKRIQLQK 241

[Close]

BLAST of HG10013736 vs. TAIR 10
Match: AT3G01790.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 76.3 bits (186), Expect = 4.4e-14
Identity = 39/96 (40.62%), Postives = 55/96 (57.29%), Query Frame = 0


Query: 112 WYVVDATDKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLY 171
           W V DA  ++LGRLAS I+  ++ KD  TY P+ D G   IV+NA+++  +GRK T K Y
Sbjct: 32  WRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLNAKEIGFTGRKLTDKFY 91

Query: 172 RRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLP 208
           R H+G  G +   +      + P  +I  AV  MLP
Sbjct: 92  RWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLP 127

[Close]

BLAST of HG10013736 vs. TAIR 10
Match: AT3G01790.2 (Ribosomal protein L13 family protein )

HSP 1 Score: 76.3 bits (186), Expect = 4.4e-14
Identity = 39/96 (40.62%), Postives = 55/96 (57.29%), Query Frame = 0


Query: 112 WYVVDATDKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLY 171
           W V DA  ++LGRLAS I+  ++ KD  TY P+ D G   IV+NA+++  +GRK T K Y
Sbjct: 32  WRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLNAKEIGFTGRKLTDKFY 91

Query: 172 RRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLP 208
           R H+G  G +   +      + P  +I  AV  MLP
Sbjct: 92  RWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLP 127

The following BLAST results are available for this feature:

BLAST of HG10013736 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146016.1	2.2e-124	83.94	50S ribosomal protein L13, chloroplastic [Cucumis sativus] >KGN55030.1 hypotheti...	[more]
XP_008463780.1	6.4e-124	84.31	PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis melo]	[more]
XP_022941245.1	7.1e-123	83.58	50S ribosomal protein L13, chloroplastic-like [Cucurbita moschata]	[more]
XP_023524699.1	9.2e-123	83.58	50S ribosomal protein L13, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
KAG6607943.1	2.1e-122	83.21	50S ribosomal protein L13, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of HG10013736 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYL9	1.1e-86	61.65	50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
P12629	4.7e-77	56.52	50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL13 P...	[more]
Q3MF94	2.5e-46	58.48	50S ribosomal protein L13 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937...	[more]
Q8YPK6	7.2e-46	57.89	50S ribosomal protein L13 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576...	[more]
B8HMT1	4.7e-45	56.40	50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=39...	[more]

BLAST of HG10013736 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZG1	1.1e-124	83.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G623380 PE=3 SV=1	[more]
A0A1S3CK07	3.1e-124	84.31	50S ribosomal protein L13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501842...	[more]
A0A6J1FT16	3.4e-123	83.58	50S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1F6Z3	3.8e-122	83.58	50S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1IW42	4.9e-122	82.85	50S ribosomal protein L13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of HG10013736 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78630.1	7.9e-88	61.65	Ribosomal protein L13 family protein	[more]
AT3G01790.1	4.4e-14	40.63	Ribosomal protein L13 family protein	[more]
AT3G01790.2	4.4e-14	40.63	Ribosomal protein L13 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005822	Ribosomal protein L13	PFAM	PF00572	Ribosomal_L13	coord: 111..210 e-value: 1.1E-36 score: 125.5
IPR005822	Ribosomal protein L13	PANTHER	PTHR11545	RIBOSOMAL PROTEIN L13	coord: 231..271
IPR005822	Ribosomal protein L13	PANTHER	PTHR11545	RIBOSOMAL PROTEIN L13	coord: 66..210
IPR005822	Ribosomal protein L13	HAMAP	MF_01366	Ribosomal_L13	coord: 112..264 score: 25.211914
IPR005822	Ribosomal protein L13	CDD	cd00392	Ribosomal_L13	coord: 112..251 e-value: 2.39492E-58 score: 180.008
IPR005823	Ribosomal protein L13, bacterial-type	TIGRFAM	TIGR01066	TIGR01066	coord: 106..210 e-value: 4.7E-43 score: 144.3
IPR036899	Ribosomal protein L13 superfamily	GENE3D	3.90.1180.10	Ribosomal protein L13	coord: 101..216 e-value: 3.4E-46 score: 158.6
IPR036899	Ribosomal protein L13 superfamily	GENE3D	3.90.1180.10	Ribosomal protein L13	coord: 222..274 e-value: 8.3E-6 score: 27.9
IPR036899	Ribosomal protein L13 superfamily	SUPERFAMILY	52161	Ribosomal protein L13	coord: 106..263
None	No IPR available	PANTHER	PTHR11545:SF27	BNAA02G18970D PROTEIN	coord: 231..271
None	No IPR available	PANTHER	PTHR11545:SF27	BNAA02G18970D PROTEIN	coord: 66..210

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10013736.1	HG10013736.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017148	negative regulation of translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome