HG10013695 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10013695
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCLAVATA3/ESR-RELATED 3
LocationChr02: 3861418 .. 3861675 (+)
RNA-Seq ExpressionHG10013695
SyntenyHG10013695
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTGTCGTGTAAAGCTGTTGTTTTGGGTTGTGGTGTTGATATTGCTATTGTGTTCTTCCATTTCTGAAAGCCGTTTGCTTTCATCTTCTTCTTCTTCTTCATCATCTTCTTCCTCTTTGAATAAGAAAAACGAATTATTTGTAAAGAATGTGAAAGAAATGTTGAAGTTTATCATTGAAGAGAAAGAGAAGCTTGGAAGGCATTTTGTGTCCAAAAGACTCAGCCCTGGAGGACCTGATCCACGTCATCATTAG

mRNA sequence

ATGGCTTGTCGTGTAAAGCTGTTGTTTTGGGTTGTGGTGTTGATATTGCTATTGTGTTCTTCCATTTCTGAAAGCCGTTTGCTTTCATCTTCTTCTTCTTCTTCATCATCTTCTTCCTCTTTGAATAAGAAAAACGAATTATTTGTAAAGAATGTGAAAGAAATGTTGAAGTTTATCATTGAAGAGAAAGAGAAGCTTGGAAGGCATTTTGTGTCCAAAAGACTCAGCCCTGGAGGACCTGATCCACGTCATCATTAG

Coding sequence (CDS)

ATGGCTTGTCGTGTAAAGCTGTTGTTTTGGGTTGTGGTGTTGATATTGCTATTGTGTTCTTCCATTTCTGAAAGCCGTTTGCTTTCATCTTCTTCTTCTTCTTCATCATCTTCTTCCTCTTTGAATAAGAAAAACGAATTATTTGTAAAGAATGTGAAAGAAATGTTGAAGTTTATCATTGAAGAGAAAGAGAAGCTTGGAAGGCATTTTGTGTCCAAAAGACTCAGCCCTGGAGGACCTGATCCACGTCATCATTAG

Protein sequence

MACRVKLLFWVVVLILLLCSSISESRLLSSSSSSSSSSSSLNKKNELFVKNVKEMLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH
Homology
[Close]
BLAST of HG10013695 vs. NCBI nr
Match: KGN55081.1 (hypothetical protein Csa_012463 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 2.1e-25
Identity = 73/84 (86.90%), Postives = 75/84 (89.29%), Query Frame = 0 

Query: 3  CRVKL-LFWVVVLILLLCSSISESRLLSSSSSSSSSSSSLNKKNELFVKNVKEMLKFIIE 62
          C VKL LFW +VLILLLCSSISESRLLSS S S S SSS NKKNELFVKN +EMLKFIIE
Sbjct: 4  CSVKLILFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKFIIE 63

Query: 63 EKEKLGRHFVSKRLSPGGPDPRHH 86
          EKEKLGRHFVSKRLSPGGPDPRHH
Sbjct: 64 EKEKLGRHFVSKRLSPGGPDPRHH 87

[Close]
BLAST of HG10013695 vs. ExPASy TrEMBL
Match: A0A0A0L4M1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627800 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.0e-25
Identity = 73/84 (86.90%), Postives = 75/84 (89.29%), Query Frame = 0 

Query: 3  CRVKL-LFWVVVLILLLCSSISESRLLSSSSSSSSSSSSLNKKNELFVKNVKEMLKFIIE 62
          C VKL LFW +VLILLLCSSISESRLLSS S S S SSS NKKNELFVKN +EMLKFIIE
Sbjct: 4  CSVKLILFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKFIIE 63

Query: 63 EKEKLGRHFVSKRLSPGGPDPRHH 86
          EKEKLGRHFVSKRLSPGGPDPRHH
Sbjct: 64 EKEKLGRHFVSKRLSPGGPDPRHH 87

[Close]
BLAST of HG10013695 vs. TAIR 10
Match: AT1G06225.1 (CLAVATA3/ESR-RELATED 3 )

HSP 1 Score: 40.4 bits (93), Expect = 8.3e-04
Identity = 35/81 (43.21%), Postives = 47/81 (58.02%), Query Frame = 0 

Query: 5  VKLLFWVVVLILLLCSSISESRLLSSSSSSSSSSSSLNKKNELFVKNVKEMLKFIIEEKE 64
          +KL   +V+L++L  +S+ E R L +    S SS     + ELF + +KEM      E+ 
Sbjct: 4  LKLWVCLVLLLVLELTSVHECRPLVAEERFSGSSRLKKIRRELF-ERLKEMKGRSEGEET 63

Query: 65 KLGRHFVSKRLSPGGPDPRHH 86
           LG    SKRLSPGGPDPRHH
Sbjct: 64 ILGNTLDSKRLSPGGPDPRHH 83

The following BLAST results are available for this feature:
BLAST of HG10013695 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55081.12.1e-2586.90hypothetical protein Csa_012463 [Cucumis sativus][more]
BLAST of HG10013695 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10013695 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4M11.0e-2586.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627800 PE=4 SV=1[more]
BLAST of HG10013695 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G06225.18.3e-0443.21CLAVATA3/ESR-RELATED 3 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10013695.1HG10013695.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045168 cell-cell signaling involved in cell fate commitment
molecular_function GO:0033612 receptor serine/threonine kinase binding