HG10013678 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10013678
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Nucleic acid-binding, OB-fold containing protein
Location	Chr02: 3702669 .. 3704093 (+)
RNA-Seq Expression	HG10013678
Synteny	HG10013678

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACGCCCGCATCGCAGGACCTGCACCAGACCAATGCAGCGCCTAGACCTGGCCTCAGGAAGCCAGTCTTTGTTAAGATCGAACAGCTCAAGCCCGGCACCAATGGCCACACACTCATCGTCAAGGTTGTTAGCTCCAATACCGTCTTGCAGAAGGGTCGATCGGTCTCTCAGCACCTTCGACAGACGCGGATCGCCGAGTGCCTTGTTGGCGACGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAGGGTATGGATTTTCGAATCTTCCATTGCTGTTTGGTTTTGGGGAAATTAGGTATTGTTTTTATCGCAGCTGGGAGACTAAATCATTGATCATGTAGGTTGGGATATTTGTAGCGATTGGAATTTGACATTTTCACGCACTTTTAAACCAGGGTTTGAAACAATGAAATAATATGGATTCTGAGATGGGTTTTGGAGGATTAGCTAGTTCTTGCCGACATGCTTAAAGGAACTTGGAAGTAGAAATAAGAGGCCGTAAAGGATTCTGGTATTTTCTTACTAGGGGGTGGTCTCTGTTTTATGGATTGCATAAGAAGCATTGATTTTGCTCTACAAAATGTAATTTCAATAACAGTAGTCTGGACTGGATAGGGATATGAAAAGAACTTTACTGTCTTGCACTAGGTTTTGTGCTGGGTTATGAATGGCTAGGAATAATAAAAAAGTCCCTGTGGTTCCTGATCTTTATGCATAAGCTGCAGCTGGTTTCGAACTGAAACATTATTTTTTTTTGTATTAATTGTATGCTAATGCCCCAAGGGGCGGCCCCATTGGCAAGGGCTTGAGGTCTCTTAGTCATAGAGGTTCTAAGTTTGGACCTTCAAGTGAGCTTAATACCAAAAAGCCTTGATATCTCCAAGGTCCAGACCTTAGGGTGGGAGCGGGTGGCCCCGGGCATAGGGGAGAGAAAATCTGACGGGTATATTGAAGATTTAACTGAAACTGAAAGTTTGATGTTAACTCCTCACAAATCCATAGCCCAATCTACTTCTAGTCGGTCTGTAAACTGTTGCCACTTGAGTCTTTAGCCTTAAAATGGAATTTTTGTAAACAAGGATAATGATATATCATGGGTACCATCAAATATATATGTTTGGAAAGTATTAATTACGTGCAAAGCATACTTAATTTTGTTTTCTTTGTTACCTCAGCATTTAATCTTCTCTAAAGATTTAAACGGGTTGTTTTGTTTCCTCAGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATTGACATGTTCAAAGGGTCTATGAGGCTAGCAGTTGATAAATGGGGCCGCATTGAGCTCACTGAGCCTGAAGATTTTGTCGTCAAGGAAGACAATAATCTATCTTTAGTTGAGTATGAACTTGTGAATGTTGCAGAGGAATGA

mRNA sequence

ATGGCGACGCCCGCATCGCAGGACCTGCACCAGACCAATGCAGCGCCTAGACCTGGCCTCAGGAAGCCAGTCTTTGTTAAGATCGAACAGCTCAAGCCCGGCACCAATGGCCACACACTCATCGTCAAGGTTGTTAGCTCCAATACCGTCTTGCAGAAGGGTCGATCGGTCTCTCAGCACCTTCGACAGACGCGGATCGCCGAGTGCCTTGTTGGCGACGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAGGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATTGACATGTTCAAAGGGTCTATGAGGCTAGCAGTTGATAAATGGGGCCGCATTGAGCTCACTGAGCCTGAAGATTTTGTCGTCAAGGAAGACAATAATCTATCTTTAGTTGAGTATGAACTTGTGAATGTTGCAGAGGAATGA

Coding sequence (CDS)

ATGGCGACGCCCGCATCGCAGGACCTGCACCAGACCAATGCAGCGCCTAGACCTGGCCTCAGGAAGCCAGTCTTTGTTAAGATCGAACAGCTCAAGCCCGGCACCAATGGCCACACACTCATCGTCAAGGTTGTTAGCTCCAATACCGTCTTGCAGAAGGGTCGATCGGTCTCTCAGCACCTTCGACAGACGCGGATCGCCGAGTGCCTTGTTGGCGACGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAGGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATTGACATGTTCAAAGGGTCTATGAGGCTAGCAGTTGATAAATGGGGCCGCATTGAGCTCACTGAGCCTGAAGATTTTGTCGTCAAGGAAGACAATAATCTATCTTTAGTTGAGTATGAACTTGTGAATGTTGCAGAGGAATGA

Protein sequence

MATPASQDLHQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIELTEPEDFVVKEDNNLSLVEYELVNVAEE

Homology

[Close]

BLAST of HG10013678 vs. NCBI nr
Match: XP_004146043.1 (uncharacterized protein At4g28440 [Cucumis sativus] >KGN55099.1 hypothetical protein Csa_012716 [Cucumis sativus])

HSP 1 Score: 283.9 bits (725), Expect = 8.1e-73
Identity = 143/147 (97.28%), Postives = 145/147 (98.64%), Query Frame = 0


Query: 3   TPASQDLHQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLR 62
           TPASQ+L QTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLR
Sbjct: 8   TPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLR 67

Query: 63  QTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEL 122
           QTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEL
Sbjct: 68  QTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEL 127

Query: 123 TEPEDFVVKEDNNLSLVEYELVNVAEE 150
            +PEDFVVKEDNNLSLVEYELVNVAEE
Sbjct: 128 ADPEDFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of HG10013678 vs. NCBI nr
Match: XP_038899654.1 (uncharacterized protein At4g28440-like [Benincasa hispida])

HSP 1 Score: 280.4 bits (716), Expect = 9.0e-72
Identity = 142/147 (96.60%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 3   TPASQDLHQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLR 62
           TPASQ+L Q+NAA RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLR
Sbjct: 8   TPASQELQQSNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLR 67

Query: 63  QTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEL 122
           QTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEL
Sbjct: 68  QTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEL 127

Query: 123 TEPEDFVVKEDNNLSLVEYELVNVAEE 150
            EPEDFVVKEDNNLSLVEYELVNVAEE
Sbjct: 128 AEPEDFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of HG10013678 vs. NCBI nr
Match: XP_008463705.1 (PREDICTED: uncharacterized protein At4g28440-like [Cucumis melo] >KAA0066804.1 Nucleic acid-binding [Cucumis melo var. makuwa] >TYK27951.1 Nucleic acid-binding [Cucumis melo var. makuwa])

HSP 1 Score: 280.0 bits (715), Expect = 1.2e-71
Identity = 141/147 (95.92%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 3   TPASQDLHQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLR 62
           TPASQ+L QTNAA RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLR
Sbjct: 8   TPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLR 67

Query: 63  QTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEL 122
           QTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIE+
Sbjct: 68  QTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEI 127

Query: 123 TEPEDFVVKEDNNLSLVEYELVNVAEE 150
            +PEDFVVKEDNNLSLVEYELVNVAEE
Sbjct: 128 ADPEDFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of HG10013678 vs. NCBI nr
Match: XP_022139613.1 (uncharacterized protein At4g28440-like [Momordica charantia])

HSP 1 Score: 260.4 bits (664), Expect = 9.6e-66
Identity = 131/147 (89.12%), Postives = 138/147 (93.88%), Query Frame = 0


Query: 3   TPASQDLHQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLR 62
           TPAS ++ Q+NA  RPGLRKPVFVK+EQLKPGTNGHTL VKVV+SNTVLQKGRSVSQHLR
Sbjct: 8   TPASPEVQQSNAEARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGRSVSQHLR 67

Query: 63  QTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEL 122
           QTRIAECLVGDETGTIL TARNDQVD VKP TTII+RNAKIDMFKGSMRLAVDKWGRIEL
Sbjct: 68  QTRIAECLVGDETGTILLTARNDQVDLVKPETTIIIRNAKIDMFKGSMRLAVDKWGRIEL 127

Query: 123 TEPEDFVVKEDNNLSLVEYELVNVAEE 150
           TEP +FVVKEDNNLSLVEYELVNVAEE
Sbjct: 128 TEPANFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of HG10013678 vs. NCBI nr
Match: XP_023535412.1 (uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 255.0 bits (650), Expect = 4.0e-64
Identity = 128/135 (94.81%), Postives = 132/135 (97.78%), Query Frame = 0


Query: 15  APRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDE 74
           A R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECL+GDE
Sbjct: 10  ASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDE 69

Query: 75  TGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIELTEPEDFVVKEDN 134
           TGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIE+ EPE+FVVKEDN
Sbjct: 70  TGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEPENFVVKEDN 129

Query: 135 NLSLVEYELVNVAEE 150
           NLSLVEYELVNVAEE
Sbjct: 130 NLSLVEYELVNVAEE 144

[Close]

BLAST of HG10013678 vs. ExPASy Swiss-Prot
Match: O49453 (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.2e-44
Identity = 90/132 (68.18%), Postives = 105/132 (79.55%), Query Frame = 0


Query: 21  RKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDE 80
           RKPVFVK+EQLKPGT GHTL VKV+ +N V+   R      S+S+  + +RI ECL+GDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 81  TGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIELTEPEDFVVKEDN 140
           TG ILFTARNDQVD +KPG T+ILRN++IDMFKG+MRL VDKWGRIE T    F VKEDN
Sbjct: 78  TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137

Query: 141 NLSLVEYELVNV 147
           NLSLVEYEL+NV
Sbjct: 138 NLSLVEYELINV 149

[Close]

BLAST of HG10013678 vs. ExPASy TrEMBL
Match: A0A0A0L242 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G629450 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 3.9e-73
Identity = 143/147 (97.28%), Postives = 145/147 (98.64%), Query Frame = 0


Query: 3   TPASQDLHQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLR 62
           TPASQ+L QTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLR
Sbjct: 8   TPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLR 67

Query: 63  QTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEL 122
           QTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEL
Sbjct: 68  QTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEL 127

Query: 123 TEPEDFVVKEDNNLSLVEYELVNVAEE 150
            +PEDFVVKEDNNLSLVEYELVNVAEE
Sbjct: 128 ADPEDFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of HG10013678 vs. ExPASy TrEMBL
Match: A0A5D3DWE0 (Nucleic acid-binding OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001550 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.7e-72
Identity = 141/147 (95.92%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 3   TPASQDLHQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLR 62
           TPASQ+L QTNAA RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLR
Sbjct: 8   TPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLR 67

Query: 63  QTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEL 122
           QTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIE+
Sbjct: 68  QTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEI 127

Query: 123 TEPEDFVVKEDNNLSLVEYELVNVAEE 150
            +PEDFVVKEDNNLSLVEYELVNVAEE
Sbjct: 128 ADPEDFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of HG10013678 vs. ExPASy TrEMBL
Match: A0A1S3CKC4 (uncharacterized protein At4g28440-like OS=Cucumis melo OX=3656 GN=LOC103501787 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.7e-72
Identity = 141/147 (95.92%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 3   TPASQDLHQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLR 62
           TPASQ+L QTNAA RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLR
Sbjct: 8   TPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLR 67

Query: 63  QTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEL 122
           QTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIE+
Sbjct: 68  QTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEI 127

Query: 123 TEPEDFVVKEDNNLSLVEYELVNVAEE 150
            +PEDFVVKEDNNLSLVEYELVNVAEE
Sbjct: 128 ADPEDFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of HG10013678 vs. ExPASy TrEMBL
Match: A0A6J1CG19 (uncharacterized protein At4g28440-like OS=Momordica charantia OX=3673 GN=LOC111010472 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.6e-66
Identity = 131/147 (89.12%), Postives = 138/147 (93.88%), Query Frame = 0


Query: 3   TPASQDLHQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLR 62
           TPAS ++ Q+NA  RPGLRKPVFVK+EQLKPGTNGHTL VKVV+SNTVLQKGRSVSQHLR
Sbjct: 8   TPASPEVQQSNAEARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGRSVSQHLR 67

Query: 63  QTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEL 122
           QTRIAECLVGDETGTIL TARNDQVD VKP TTII+RNAKIDMFKGSMRLAVDKWGRIEL
Sbjct: 68  QTRIAECLVGDETGTILLTARNDQVDLVKPETTIIIRNAKIDMFKGSMRLAVDKWGRIEL 127

Query: 123 TEPEDFVVKEDNNLSLVEYELVNVAEE 150
           TEP +FVVKEDNNLSLVEYELVNVAEE
Sbjct: 128 TEPANFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of HG10013678 vs. ExPASy TrEMBL
Match: A0A6J1FBC1 (uncharacterized protein At4g28440-like OS=Cucurbita moschata OX=3662 GN=LOC111442557 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.6e-64
Identity = 127/135 (94.07%), Postives = 132/135 (97.78%), Query Frame = 0


Query: 15  APRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDE 74
           A R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECL+GDE
Sbjct: 10  ASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDE 69

Query: 75  TGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIELTEPEDFVVKEDN 134
           TGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIE+ EPE+FVVKEDN
Sbjct: 70  TGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEPENFVVKEDN 129

Query: 135 NLSLVEYELVNVAEE 150
           NLSL+EYELVNVAEE
Sbjct: 130 NLSLIEYELVNVAEE 144

[Close]

BLAST of HG10013678 vs. TAIR 10
Match: AT2G33845.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 198.4 bits (503), Expect = 4.2e-51
Identity = 100/130 (76.92%), Postives = 110/130 (84.62%), Query Frame = 0


Query: 21  RKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK-GRSVSQHLRQTRIAECLVGDETGTIL 80
           +KPVFVK++QLKPGT+GHTL VKVV  N+V QK G + S HLR  RI+ECLVGDET  IL
Sbjct: 53  KKPVFVKVDQLKPGTSGHTLTVKVVDQNSVPQKPGAASSSHLRPARISECLVGDETACIL 112

Query: 81  FTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIELTEPEDFVVKEDNNLSLV 140
           FTARNDQV+ +KPG T+ LRNAKIDMFKGSMRLAVDKWGRIE TEP D  VKEDNNLSLV
Sbjct: 113 FTARNDQVELMKPGATVNLRNAKIDMFKGSMRLAVDKWGRIEATEPADITVKEDNNLSLV 172

Query: 141 EYELVNVAEE 150
           EYELVNV EE
Sbjct: 173 EYELVNVVEE 182

[Close]

BLAST of HG10013678 vs. TAIR 10
Match: AT1G23750.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 191.0 bits (484), Expect = 6.7e-49
Identity = 89/132 (67.42%), Postives = 110/132 (83.33%), Query Frame = 0


Query: 17  RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETG 76
           + GL+KP F K++QL+PGT+GH + VK+VS+  VLQKGR+     RQ RI+EC+VGDETG
Sbjct: 6   KAGLKKPAFTKVDQLRPGTSGHNVNVKIVSTKMVLQKGRADGPQARQLRISECIVGDETG 65

Query: 77  TILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIELTEPEDFVVKEDNNL 136
            I+FTARNDQVD +K G+T+ LRNAKIDM+KGSMRLAVDKWGR+E+TEP  F VKED N+
Sbjct: 66  VIVFTARNDQVDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVEVTEPASFKVKEDTNM 125

Query: 137 SLVEYELVNVAE 149
           SL+EYELVNV E
Sbjct: 126 SLIEYELVNVVE 137

[Close]

BLAST of HG10013678 vs. TAIR 10
Match: AT4G28440.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 179.9 bits (455), Expect = 1.5e-45
Identity = 90/132 (68.18%), Postives = 105/132 (79.55%), Query Frame = 0


Query: 21  RKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDE 80
           RKPVFVK+EQLKPGT GHTL VKV+ +N V+   R      S+S+  + +RI ECL+GDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 81  TGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIELTEPEDFVVKEDN 140
           TG ILFTARNDQVD +KPG T+ILRN++IDMFKG+MRL VDKWGRIE T    F VKEDN
Sbjct: 78  TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137

Query: 141 NLSLVEYELVNV 147
           NLSLVEYEL+NV
Sbjct: 138 NLSLVEYELINV 149

[Close]

BLAST of HG10013678 vs. TAIR 10
Match: AT1G10590.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 177.2 bits (448), Expect = 1.0e-44
Identity = 87/130 (66.92%), Postives = 107/130 (82.31%), Query Frame = 0


Query: 20  LRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGT 79
           LRKPVF K+ +L+PGTNGH+L VKVV++  V+Q+  GR +    RQ RIAECLVGDETG 
Sbjct: 8   LRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECLVGDETGI 67

Query: 80  ILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIELT-EPEDFVVKEDNNL 139
           I+FTARNDQVD +K G+ + LRNAKIDM+KGSMRLAVD+WGR+E+  EP D  VK+DNNL
Sbjct: 68  IIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVKDDNNL 127

Query: 140 SLVEYELVNV 147
           SL+EYELV+V
Sbjct: 128 SLIEYELVSV 137

[Close]

BLAST of HG10013678 vs. TAIR 10
Match: AT1G10590.3 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 177.2 bits (448), Expect = 1.0e-44
Identity = 87/130 (66.92%), Postives = 107/130 (82.31%), Query Frame = 0


Query: 20  LRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGT 79
           LRKPVF K+ +L+PGTNGH+L VKVV++  V+Q+  GR +    RQ RIAECLVGDETG 
Sbjct: 22  LRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECLVGDETGI 81

Query: 80  ILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIELT-EPEDFVVKEDNNL 139
           I+FTARNDQVD +K G+ + LRNAKIDM+KGSMRLAVD+WGR+E+  EP D  VK+DNNL
Sbjct: 82  IIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVKDDNNL 141

Query: 140 SLVEYELVNV 147
           SL+EYELV+V
Sbjct: 142 SLIEYELVSV 151

The following BLAST results are available for this feature:

BLAST of HG10013678 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146043.1	8.1e-73	97.28	uncharacterized protein At4g28440 [Cucumis sativus] >KGN55099.1 hypothetical pro...	[more]
XP_038899654.1	9.0e-72	96.60	uncharacterized protein At4g28440-like [Benincasa hispida]	[more]
XP_008463705.1	1.2e-71	95.92	PREDICTED: uncharacterized protein At4g28440-like [Cucumis melo] >KAA0066804.1 N...	[more]
XP_022139613.1	9.6e-66	89.12	uncharacterized protein At4g28440-like [Momordica charantia]	[more]
XP_023535412.1	4.0e-64	94.81	uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10013678 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49453	2.2e-44	68.18	Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 P...	[more]

BLAST of HG10013678 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L242	3.9e-73	97.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G629450 PE=4 SV=1	[more]
A0A5D3DWE0	5.7e-72	95.92	Nucleic acid-binding OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384...	[more]
A0A1S3CKC4	5.7e-72	95.92	uncharacterized protein At4g28440-like OS=Cucumis melo OX=3656 GN=LOC103501787 P...	[more]
A0A6J1CG19	4.6e-66	89.12	uncharacterized protein At4g28440-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1FBC1	2.6e-64	94.07	uncharacterized protein At4g28440-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]

BLAST of HG10013678 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33845.1	4.2e-51	76.92	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G23750.1	6.7e-49	67.42	Nucleic acid-binding, OB-fold-like protein	[more]
AT4G28440.1	1.5e-45	68.18	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.1	1.0e-44	66.92	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.3	1.0e-44	66.92	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 35..138 e-value: 2.4E-44 score: 151.8
None	No IPR available	PANTHER	PTHR31472	OS05G0244600 PROTEIN	coord: 2..149
None	No IPR available	PANTHER	PTHR31472:SF26	SUBFAMILY NOT NAMED	coord: 2..149
None	No IPR available	CDD	cd04491	SoSSB_OBF	coord: 39..122 e-value: 1.5689E-18 score: 73.0409
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 19..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10013678.1	HG10013678.1	mRNA