HG10013620 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10013620
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDNA ligase
LocationChr02: 3088701 .. 3089054 (+)
RNA-Seq ExpressionHG10013620
SyntenyHG10013620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGCTGAACCAGTACAATCCATTTTCATTCACTCACAAGCTCAAATCCTCAATCCGTTGTTTCCGCCCCGATCATGGCGATTTGGACGAAACCGAAGACGATTCTTCTCCAAGAACTCCTAGATCGCCTCTCAAATCAATGGCGTCAGAGCTCCCGGAGCTCCGGGGAATGTGCCGGAATCTCGTCGCTCGAATCAGCAGGAGTCGCCGACGGTACCATCACTCCGCCGATTTCCGATACGATCCTTCGAGTTATGCCCTTAATTTCGAGGACGAACAGATTCGCGATGATGATGAGTTTCCTATTAGGGATTTCACTTCGAGATTGCCGGCGTCGCCGCCACTGAAATGA

mRNA sequence

ATGATGCTGAACCAGTACAATCCATTTTCATTCACTCACAAGCTCAAATCCTCAATCCGTTGTTTCCGCCCCGATCATGGCGATTTGGACGAAACCGAAGACGATTCTTCTCCAAGAACTCCTAGATCGCCTCTCAAATCAATGGCGTCAGAGCTCCCGGAGCTCCGGGGAATGTGCCGGAATCTCGTCGCTCGAATCAGCAGGAGTCGCCGACGGTACCATCACTCCGCCGATTTCCGATACGATCCTTCGAGTTATGCCCTTAATTTCGAGGACGAACAGATTCGCGATGATGATGAGTTTCCTATTAGGGATTTCACTTCGAGATTGCCGGCGTCGCCGCCACTGAAATGA

Coding sequence (CDS)

ATGATGCTGAACCAGTACAATCCATTTTCATTCACTCACAAGCTCAAATCCTCAATCCGTTGTTTCCGCCCCGATCATGGCGATTTGGACGAAACCGAAGACGATTCTTCTCCAAGAACTCCTAGATCGCCTCTCAAATCAATGGCGTCAGAGCTCCCGGAGCTCCGGGGAATGTGCCGGAATCTCGTCGCTCGAATCAGCAGGAGTCGCCGACGGTACCATCACTCCGCCGATTTCCGATACGATCCTTCGAGTTATGCCCTTAATTTCGAGGACGAACAGATTCGCGATGATGATGAGTTTCCTATTAGGGATTTCACTTCGAGATTGCCGGCGTCGCCGCCACTGAAATGA

Protein sequence

MMLNQYNPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPRTPRSPLKSMASELPELRGMCRNLVARISRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASPPLK
Homology
BLAST of HG10013620 vs. NCBI nr
Match: XP_022981208.1 (uncharacterized protein LOC111480417 [Cucurbita maxima])

HSP 1 Score: 208.8 bits (530), Expect = 2.6e-50
Identity = 100/115 (86.96%), Postives = 106/115 (92.17%), Query Frame = 0

Query: 1   MMLNQYNPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPRTPRSPLKSMASELPELRGMCR 60
           MMLN+Y+PFSFT KLKSSIRCFR DH D  E+EDDSSPRTPRSPLKSMA+E PE+RGMCR
Sbjct: 1   MMLNEYHPFSFTRKLKSSIRCFRRDHSDFFESEDDSSPRTPRSPLKSMAAEFPEIRGMCR 60

Query: 61  NLVARISRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASPP 116
           NLVARI R RRRYHHSADFRYDPSSYALNFEDEQ+RDDDEFPIRDF SRLPASPP
Sbjct: 61  NLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPP 115

BLAST of HG10013620 vs. NCBI nr
Match: XP_023523424.1 (uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 207.6 bits (527), Expect = 5.8e-50
Identity = 101/114 (88.60%), Postives = 104/114 (91.23%), Query Frame = 0

Query: 2   MLNQYNPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPRTPRSPLKSMASELPELRGMCRN 61
           MLN Y+PFSFT KLKSSI CFR DHGD  E EDDSSPRTPRSPLKSMA+E PELRGMCRN
Sbjct: 1   MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEDDSSPRTPRSPLKSMAAEFPELRGMCRN 60

Query: 62  LVARISRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASPP 116
           LVARI RSRRRYHHSADFRYDPSSYALNFEDEQ+RDDDEFPIRDF SRLPASPP
Sbjct: 61  LVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPP 114

BLAST of HG10013620 vs. NCBI nr
Match: XP_022940408.1 (uncharacterized protein LOC111446022 [Cucurbita moschata] >KAG6608139.1 hypothetical protein SDJN03_01481, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 206.8 bits (525), Expect = 9.9e-50
Identity = 101/115 (87.83%), Postives = 104/115 (90.43%), Query Frame = 0

Query: 1   MMLNQYNPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPRTPRSPLKSMASELPELRGMCR 60
           MMLN Y+PFSFT KLKSSI CFR DHGD  E E DSSPRTPRSPLKSMA+E PELRGMCR
Sbjct: 1   MMLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCR 60

Query: 61  NLVARISRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASPP 116
           NLVARI RSRRRYHHSADFRYDPSSYALNFEDEQ+RDDDEFPIRDF SRLPASPP
Sbjct: 61  NLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPP 115

BLAST of HG10013620 vs. NCBI nr
Match: KAG7031776.1 (hypothetical protein SDJN02_05817, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 204.9 bits (520), Expect = 3.8e-49
Identity = 100/114 (87.72%), Postives = 103/114 (90.35%), Query Frame = 0

Query: 2   MLNQYNPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPRTPRSPLKSMASELPELRGMCRN 61
           MLN Y+PFSFT KLKSSI CFR DHGD  E E DSSPRTPRSPLKSMA+E PELRGMCRN
Sbjct: 1   MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCRN 60

Query: 62  LVARISRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASPP 116
           LVARI RSRRRYHHSADFRYDPSSYALNFEDEQ+RDDDEFPIRDF SRLPASPP
Sbjct: 61  LVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPP 114

BLAST of HG10013620 vs. NCBI nr
Match: XP_022138148.1 (uncharacterized protein LOC111009386 [Momordica charantia])

HSP 1 Score: 183.7 bits (465), Expect = 9.0e-43
Identity = 93/116 (80.17%), Postives = 100/116 (86.21%), Query Frame = 0

Query: 1   MMLNQYN--PFSFTHKLKSSIRCFRPDHGDLDETEDDSSPRTPRSPLKSMASELPELRGM 60
           M+ N+YN  PFSFTHKLKSSI CFR DHGDL + ED++S R+PRSPLKS ASE  ELRGM
Sbjct: 1   MLNNEYNSSPFSFTHKLKSSILCFRADHGDLGDHEDEASLRSPRSPLKSTASEHTELRGM 60

Query: 61  CRNLVARISRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASP 115
           CRNLVARI RSRRRYHHSADFRYDPSSYALNFEDE  R DD+FPIRDF SRLPASP
Sbjct: 61  CRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYDDDFPIRDFASRLPASP 116

BLAST of HG10013620 vs. ExPASy TrEMBL
Match: A0A6J1J1H3 (uncharacterized protein LOC111480417 OS=Cucurbita maxima OX=3661 GN=LOC111480417 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.3e-50
Identity = 100/115 (86.96%), Postives = 106/115 (92.17%), Query Frame = 0

Query: 1   MMLNQYNPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPRTPRSPLKSMASELPELRGMCR 60
           MMLN+Y+PFSFT KLKSSIRCFR DH D  E+EDDSSPRTPRSPLKSMA+E PE+RGMCR
Sbjct: 1   MMLNEYHPFSFTRKLKSSIRCFRRDHSDFFESEDDSSPRTPRSPLKSMAAEFPEIRGMCR 60

Query: 61  NLVARISRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASPP 116
           NLVARI R RRRYHHSADFRYDPSSYALNFEDEQ+RDDDEFPIRDF SRLPASPP
Sbjct: 61  NLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPP 115

BLAST of HG10013620 vs. ExPASy TrEMBL
Match: A0A6J1FP70 (uncharacterized protein LOC111446022 OS=Cucurbita moschata OX=3662 GN=LOC111446022 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.8e-50
Identity = 101/115 (87.83%), Postives = 104/115 (90.43%), Query Frame = 0

Query: 1   MMLNQYNPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPRTPRSPLKSMASELPELRGMCR 60
           MMLN Y+PFSFT KLKSSI CFR DHGD  E E DSSPRTPRSPLKSMA+E PELRGMCR
Sbjct: 1   MMLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCR 60

Query: 61  NLVARISRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASPP 116
           NLVARI RSRRRYHHSADFRYDPSSYALNFEDEQ+RDDDEFPIRDF SRLPASPP
Sbjct: 61  NLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPP 115

BLAST of HG10013620 vs. ExPASy TrEMBL
Match: A0A6J1CC83 (uncharacterized protein LOC111009386 OS=Momordica charantia OX=3673 GN=LOC111009386 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.3e-43
Identity = 93/116 (80.17%), Postives = 100/116 (86.21%), Query Frame = 0

Query: 1   MMLNQYN--PFSFTHKLKSSIRCFRPDHGDLDETEDDSSPRTPRSPLKSMASELPELRGM 60
           M+ N+YN  PFSFTHKLKSSI CFR DHGDL + ED++S R+PRSPLKS ASE  ELRGM
Sbjct: 1   MLNNEYNSSPFSFTHKLKSSILCFRADHGDLGDHEDEASLRSPRSPLKSTASEHTELRGM 60

Query: 61  CRNLVARISRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASP 115
           CRNLVARI RSRRRYHHSADFRYDPSSYALNFEDE  R DD+FPIRDF SRLPASP
Sbjct: 61  CRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYDDDFPIRDFASRLPASP 116

BLAST of HG10013620 vs. ExPASy TrEMBL
Match: A0A5A7VBS3 (DNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00970 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.3e-39
Identity = 92/117 (78.63%), Postives = 98/117 (83.76%), Query Frame = 0

Query: 2   MLNQYNPFSFTHKLKSSI-RCFRPDH-GDLDETEDDSSPRTPRSPLKSMASELPELRGMC 61
           M N YNPFSFTHKLKSSI  CFRPDH  +L E EDD+        LKSM S+LPELRGMC
Sbjct: 1   MFNHYNPFSFTHKLKSSIPSCFRPDHDAELHENEDDN------PALKSMTSDLPELRGMC 60

Query: 62  RNLVARIS-RSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASPP 116
           R+LVARIS  SRRRYHHSADFRYDPSSYALNFEDEQ+RDD+EFPIRDFTSRLPASPP
Sbjct: 61  RSLVARISWPSRRRYHHSADFRYDPSSYALNFEDEQVRDDNEFPIRDFTSRLPASPP 111

BLAST of HG10013620 vs. ExPASy TrEMBL
Match: A0A1S3BVQ9 (uncharacterized protein LOC103493778 OS=Cucumis melo OX=3656 GN=LOC103493778 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.3e-39
Identity = 92/117 (78.63%), Postives = 98/117 (83.76%), Query Frame = 0

Query: 2   MLNQYNPFSFTHKLKSSI-RCFRPDH-GDLDETEDDSSPRTPRSPLKSMASELPELRGMC 61
           M N YNPFSFTHKLKSSI  CFRPDH  +L E EDD+        LKSM S+LPELRGMC
Sbjct: 1   MFNHYNPFSFTHKLKSSIPSCFRPDHDAELHENEDDN------PALKSMTSDLPELRGMC 60

Query: 62  RNLVARIS-RSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASPP 116
           R+LVARIS  SRRRYHHSADFRYDPSSYALNFEDEQ+RDD+EFPIRDFTSRLPASPP
Sbjct: 61  RSLVARISWPSRRRYHHSADFRYDPSSYALNFEDEQVRDDNEFPIRDFTSRLPASPP 111

BLAST of HG10013620 vs. TAIR 10
Match: AT5G11070.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 65.5 bits (158), Expect = 3.3e-11
Identity = 47/97 (48.45%), Postives = 55/97 (56.70%), Query Frame = 0

Query: 39  RTPRSP---LKSMASELPELRGMCRNLVARISRSRR-----------RYHHS----ADFR 98
           RTPRSP   LKS A EL ELR  CR + +RI  + R            +HHS     DF 
Sbjct: 47  RTPRSPYEWLKSTAQEL-ELRDRCRRVKSRIKVTCRNNNCAYNNCVHHHHHSQSYPGDFS 106

Query: 99  YDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASPPLK 118
           YDP SYALNFED  +R DD+    +FT+RLP SP  K
Sbjct: 107 YDPLSYALNFED-NVRADDDGSFPNFTARLPQSPVTK 141

BLAST of HG10013620 vs. TAIR 10
Match: AT5G35090.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 54.3 bits (129), Expect = 7.6e-08
Identity = 35/88 (39.77%), Postives = 48/88 (54.55%), Query Frame = 0

Query: 37  SPRTPRSPLKSMASELPELRGMCRNLVARI--------SRSRRRYHHSADFRYDPSSYAL 96
           SPR  R+  KS           C++L+ R+           +    H+ADF YDPSSYAL
Sbjct: 63  SPRLTRTLSKS--------HEKCKSLIHRMGGGVGGVGGHGKHIRRHTADFHYDPSSYAL 122

Query: 97  NFEDEQIRDD-DEFPIRDFTSRLPASPP 116
           NF+     D+ D FP+R+F++RLP SPP
Sbjct: 123 NFDKGDEDDNIDRFPLRNFSARLPHSPP 142

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022981208.12.6e-5086.96uncharacterized protein LOC111480417 [Cucurbita maxima][more]
XP_023523424.15.8e-5088.60uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo][more]
XP_022940408.19.9e-5087.83uncharacterized protein LOC111446022 [Cucurbita moschata] >KAG6608139.1 hypothet... [more]
KAG7031776.13.8e-4987.72hypothetical protein SDJN02_05817, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022138148.19.0e-4380.17uncharacterized protein LOC111009386 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1J1H31.3e-5086.96uncharacterized protein LOC111480417 OS=Cucurbita maxima OX=3661 GN=LOC111480417... [more]
A0A6J1FP704.8e-5087.83uncharacterized protein LOC111446022 OS=Cucurbita moschata OX=3662 GN=LOC1114460... [more]
A0A6J1CC834.3e-4380.17uncharacterized protein LOC111009386 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A5A7VBS31.3e-3978.63DNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00970 PE=... [more]
A0A1S3BVQ91.3e-3978.63uncharacterized protein LOC103493778 OS=Cucumis melo OX=3656 GN=LOC103493778 PE=... [more]
Match NameE-valueIdentityDescription
AT5G11070.13.3e-1148.45unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0... [more]
AT5G35090.17.6e-0839.77unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..40
NoneNo IPR availablePANTHERPTHR33168:SF61SUBFAMILY NOT NAMEDcoord: 12..115
NoneNo IPR availablePANTHERPTHR33168STRESS INDUCED PROTEIN-RELATEDcoord: 12..115

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10013620.1HG10013620.1mRNA