HG10013589 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10013589
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Ethylene-responsive transcription factor SHINE 2-like
Location	Chr02: 2810694 .. 2811830 (-)
RNA-Seq Expression	HG10013589
Synteny	HG10013589

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTATTCAAGGAAGTTCAGAGGAGTCAGGCAGCGGCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCACCCATTGCTGTAAAATTCCCTCTTTCATTATGTTGTTTATTCTTCTGCTATAAATATATGTGCCATTGGTTGGAAAATGCTCTGTTACCCCCATTTTCTGTCTGCTGCCCATAACCTGTTTGTTGATTTGCCTGAAAGAAACTGGGCGTATATCTCTGGAGATTTGTACACCGAATTGTTGTATGGATGTGCGTTATGTGGCTTGTGTTTGTTTGATAAAAAAAGCTTTGAAACCCCATGTTTTTTCTGGTGTCCATAATGTGTTTGTTGAATTGCCTGAAAGAAGATGGCCGGCCATGGCATGCAAGTTTCTGCAGATTTGTGAAGTACATTATTTCTTACAGACGTTGTGTATTTCTCTGCTGTAAACTGCTGTAAATGTATGCATTACTTGTGTTTGTTGGTTCAAAAAATGCTCTGAAAAAGTGAAAAAAAACCCATCTCCTTTCTTATGCCTTCAACCTGTTTGTTGATTTGCTTCAACGAAGCTAGCCGGCCAGTCGGCCATTGGCCACGATTATTTCTTCTCTACATTGCGCCTTGTGCCCACATTCTTATACTTTTCATGTGTTTATTTCTTTGTAGGAAGAGAAGGGTGTGGCTGGGGACATTTGACACAGCAGAGGATGCAGCACGAGCGTATGATCAAGCAGCCATCTTGATGAATGGCCAAAACGCCAAGACCAATTTCCCTGCATCTAATGACCAATCTGAAGAAGCCAGCCATCGCCATGGTTCTTCTCCAATGTCCCCAAAAGCACTTTCGGAGCTACTCAGCACAAAGCTTAGGAAGTGCTGCAAGAACCCATCTCCCTCCTTGACATGCCTGCGGCTCGACAGTGACAACGCTCACATCGGCGTATGGCAGAAGCGCGCAGGCACTCGAGCTACCTCTAATTGGGTCATGAGGATTGAGCTAGGGAAGAAAGAGATACCGTCGCCTGAATCAACAAGCCAGGAAGCTGATGGCCATGGGAATGGAATTGATGAAGAAGACAGAATCGCAATGCAAATGATTGAAGAGTTACTCAATTGGAACTGCCCTTTTCCTTCTACTTCAAGCTAA

mRNA sequence

ATGGTTTATTCAAGGAAGTTCAGAGGAGTCAGGCAGCGGCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCACCCATTGCTGAAGAGAAGGGTGTGGCTGGGGACATTTGACACAGCAGAGGATGCAGCACGAGCGTATGATCAAGCAGCCATCTTGATGAATGGCCAAAACGCCAAGACCAATTTCCCTGCATCTAATGACCAATCTGAAGAAGCCAGCCATCGCCATGGTTCTTCTCCAATGTCCCCAAAAGCACTTTCGGAGCTACTCAGCACAAAGCTTAGGAAGTGCTGCAAGAACCCATCTCCCTCCTTGACATGCCTGCGGCTCGACAGTGACAACGCTCACATCGGCGTATGGCAGAAGCGCGCAGGCACTCGAGCTACCTCTAATTGGGTCATGAGGATTGAGCTAGGGAAGAAAGAGATACCGTCGCCTGAATCAACAAGCCAGGAAGCTGATGGCCATGGGAATGGAATTGATGAAGAAGACAGAATCGCAATGCAAATGATTGAAGAGTTACTCAATTGGAACTGCCCTTTTCCTTCTACTTCAAGCTAA

Coding sequence (CDS)

ATGGTTTATTCAAGGAAGTTCAGAGGAGTCAGGCAGCGGCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCACCCATTGCTGAAGAGAAGGGTGTGGCTGGGGACATTTGACACAGCAGAGGATGCAGCACGAGCGTATGATCAAGCAGCCATCTTGATGAATGGCCAAAACGCCAAGACCAATTTCCCTGCATCTAATGACCAATCTGAAGAAGCCAGCCATCGCCATGGTTCTTCTCCAATGTCCCCAAAAGCACTTTCGGAGCTACTCAGCACAAAGCTTAGGAAGTGCTGCAAGAACCCATCTCCCTCCTTGACATGCCTGCGGCTCGACAGTGACAACGCTCACATCGGCGTATGGCAGAAGCGCGCAGGCACTCGAGCTACCTCTAATTGGGTCATGAGGATTGAGCTAGGGAAGAAAGAGATACCGTCGCCTGAATCAACAAGCCAGGAAGCTGATGGCCATGGGAATGGAATTGATGAAGAAGACAGAATCGCAATGCAAATGATTGAAGAGTTACTCAATTGGAACTGCCCTTTTCCTTCTACTTCAAGCTAA

Protein sequence

MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPASNDQSEEASHRHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVWQKRAGTRATSNWVMRIELGKKEIPSPESTSQEADGHGNGIDEEDRIAMQMIEELLNWNCPFPSTSS

Homology

[Close]

BLAST of HG10013589 vs. NCBI nr
Match: XP_022936545.1 (ethylene-responsive transcription factor SHINE 2 isoform X2 [Cucurbita moschata] >XP_022936547.1 ethylene-responsive transcription factor SHINE 2 isoform X2 [Cucurbita moschata] >XP_022936548.1 ethylene-responsive transcription factor SHINE 2 isoform X2 [Cucurbita moschata] >XP_022936549.1 ethylene-responsive transcription factor SHINE 2 isoform X2 [Cucurbita moschata])

HSP 1 Score: 359.4 bits (921), Expect = 1.9e-95
Identity = 178/190 (93.68%), Postives = 179/190 (94.21%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT
Sbjct: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60

Query: 61  NFPASNDQSEEASHRHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120
           NFPAS DQS EASH HGSSPM+PKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW
Sbjct: 61  NFPASKDQSAEASHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120

Query: 121 QKRAGTRATSNWVMRIELGKKEI----PSPESTSQEADGHGNGIDEEDRIAMQMIEELLN 180
           QKRAGTRATSNWVMRIELGKKEI    PSPESTSQE DGH NGIDEEDRIAMQMIEELLN
Sbjct: 121 QKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEPDGHRNGIDEEDRIAMQMIEELLN 180

Query: 181 WNCPFPSTSS 187
           WNCP PS SS
Sbjct: 181 WNCPLPSISS 190

[Close]

BLAST of HG10013589 vs. NCBI nr
Match: XP_022936544.1 (ethylene-responsive transcription factor SHINE 2 isoform X1 [Cucurbita moschata])

HSP 1 Score: 359.4 bits (921), Expect = 1.9e-95
Identity = 178/190 (93.68%), Postives = 179/190 (94.21%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT
Sbjct: 6   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 65

Query: 61  NFPASNDQSEEASHRHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120
           NFPAS DQS EASH HGSSPM+PKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW
Sbjct: 66  NFPASKDQSAEASHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 125

Query: 121 QKRAGTRATSNWVMRIELGKKEI----PSPESTSQEADGHGNGIDEEDRIAMQMIEELLN 180
           QKRAGTRATSNWVMRIELGKKEI    PSPESTSQE DGH NGIDEEDRIAMQMIEELLN
Sbjct: 126 QKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEPDGHRNGIDEEDRIAMQMIEELLN 185

Query: 181 WNCPFPSTSS 187
           WNCP PS SS
Sbjct: 186 WNCPLPSISS 195

[Close]

BLAST of HG10013589 vs. NCBI nr
Match: XP_004136348.1 (ethylene-responsive transcription factor SHINE 2 [Cucumis sativus] >XP_011652482.1 ethylene-responsive transcription factor SHINE 2 [Cucumis sativus] >KGN60101.1 hypothetical protein Csa_000793 [Cucumis sativus])

HSP 1 Score: 359.0 bits (920), Expect = 2.5e-95
Identity = 178/194 (91.75%), Postives = 180/194 (92.78%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT
Sbjct: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60

Query: 61  NFPASNDQSEEASHRHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120
           NFPAS D SEEASH HGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLD DNAHIGVW
Sbjct: 61  NFPASKDHSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDCDNAHIGVW 120

Query: 121 QKRAGTRATSNWVMRIELGKKEIPSPESTSQEADGHGNG--------IDEEDRIAMQMIE 180
           QKRAGTRATSNWVMRIELGKKE+PSPESTSQEADG G+G        IDEEDRIAMQMIE
Sbjct: 121 QKRAGTRATSNWVMRIELGKKEVPSPESTSQEADGDGDGDGDDHQNEIDEEDRIAMQMIE 180

Query: 181 ELLNWNCPFPSTSS 187
           ELLNWNCP PSTSS
Sbjct: 181 ELLNWNCPLPSTSS 194

[Close]

BLAST of HG10013589 vs. NCBI nr
Match: KAG6591574.1 (Ethylene-responsive transcription factor SHINE 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 358.2 bits (918), Expect = 4.2e-95
Identity = 177/190 (93.16%), Postives = 179/190 (94.21%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT
Sbjct: 6   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 65

Query: 61  NFPASNDQSEEASHRHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120
           NFPAS DQS EASH HGSSPM+PKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW
Sbjct: 66  NFPASKDQSAEASHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 125

Query: 121 QKRAGTRATSNWVMRIELGKKEI----PSPESTSQEADGHGNGIDEEDRIAMQMIEELLN 180
           QKRAGTRATSNWVMRIELGKKEI    PSPESTS+E DGH NGIDEEDRIAMQMIEELLN
Sbjct: 126 QKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSEEPDGHRNGIDEEDRIAMQMIEELLN 185

Query: 181 WNCPFPSTSS 187
           WNCP PS SS
Sbjct: 186 WNCPLPSISS 195

[Close]

BLAST of HG10013589 vs. NCBI nr
Match: XP_038899931.1 (ethylene-responsive transcription factor SHINE 2-like isoform X3 [Benincasa hispida])

HSP 1 Score: 357.5 bits (916), Expect = 7.2e-95
Identity = 178/190 (93.68%), Postives = 180/190 (94.74%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT
Sbjct: 16  MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 75

Query: 61  NFPASNDQSEEASHRHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120
           NFPAS DQSEEASH HGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW
Sbjct: 76  NFPASKDQSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 135

Query: 121 QKRAGTRATSNWVMRIELGKKEI----PSPESTSQEA--DGHGNGIDEEDRIAMQMIEEL 180
           QKRAGTRATSNWVMRIELGKK++    PSPESTSQEA  DGH NGIDEEDRIAMQMIEEL
Sbjct: 136 QKRAGTRATSNWVMRIELGKKDVPSPSPSPESTSQEADGDGHRNGIDEEDRIAMQMIEEL 195

Query: 181 LNWNCPFPST 185
           LNWNCP PST
Sbjct: 196 LNWNCPLPST 205

[Close]

BLAST of HG10013589 vs. ExPASy Swiss-Prot
Match: Q3E958 (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702 GN=SHN3 PE=2 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 7.8e-60
Identity = 116/182 (63.74%), Postives = 139/182 (76.37%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MV+S+KFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAE AARAYDQAA+LMNGQ+AKT
Sbjct: 1   MVHSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKT 60

Query: 61  NFPASNDQSEEASHRHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120
           NFP         S    S+  SPK+LSELL+ KLRK CK+ +P LTCLRLD+D++HIGVW
Sbjct: 61  NFPVIKSNGSN-SLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGVW 120

Query: 121 QKRAGTRATSNWVMRIELGKK--EIPSPESTSQEADGHGNGIDEEDRIAMQMIEELLNWN 180
           QKRAG++ + NWV  +ELG K    P  +  + +       + E+D++AMQMIEELLNW 
Sbjct: 121 QKRAGSKTSPNWVKLVELGDKVNARPGGDIETNKMKVRNEDVQEDDQMAMQMIEELLNWT 180

[Close]

BLAST of HG10013589 vs. ExPASy Swiss-Prot
Match: Q9LFN7 (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702 GN=SHN2 PE=2 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 3.0e-59
Identity = 118/189 (62.43%), Postives = 144/189 (76.19%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MV+SRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTF+TAE AARAYDQAA+LMNGQNAKT
Sbjct: 1   MVHSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKT 60

Query: 61  NFPASNDQSEEASHRHGSSP-MSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGV 120
           NFP    +      +  +SP MSPK+LSELL+ KLRK CK+ +PSLTCLRLD+D++HIGV
Sbjct: 61  NFPVVKSEEGSDHVKDVNSPLMSPKSLSELLNAKLRKSCKDLTPSLTCLRLDTDSSHIGV 120

Query: 121 WQKRAGTRATSNWVMRIELGKKEIPS----------PESTSQEADGHGNGIDEEDRIAMQ 179
           WQKRAG++ +  WVMR+ELG     S           ++  +E +     I +ED++AM+
Sbjct: 121 WQKRAGSKTSPTWVMRLELGNVVNESAVDLGLTTMNKQNVEKEEEEEEAIISDEDQLAME 180

[Close]

BLAST of HG10013589 vs. ExPASy Swiss-Prot
Match: Q9XI33 (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN=WIN1 PE=2 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 4.0e-56
Identity = 114/205 (55.61%), Postives = 145/205 (70.73%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MV ++KFRGVRQR WGSWV+EIRHPLLKRR+WLGTF+TAE+AARAYD+AA+LM+G+NAKT
Sbjct: 1   MVQTKKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKT 60

Query: 61  NFPASNDQSEEASHRHG--------SSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDS 120
           NFP +N+ + E S            SS  S  +LS +LS KLRKCCK+PSPSLTCLRLD+
Sbjct: 61  NFPLNNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKCCKSPSPSLTCLRLDT 120

Query: 121 DNAHIGVWQKRAGTRATSNWVMRIELGKKEIPSPESTSQEADGHGNG------------- 179
            ++HIGVWQKRAG+++ S+WVM +ELG      P S+SQE     +              
Sbjct: 121 ASSHIGVWQKRAGSKSDSSWVMTVELG------PASSSQETTSKASQDAILAPTTEVEIG 180

[Close]

BLAST of HG10013589 vs. ExPASy Swiss-Prot
Match: Q94AW5 (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 GN=ERF003 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.0e-23
Identity = 76/178 (42.70%), Postives = 96/178 (53.93%), Query Frame = 0


Query: 5   RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPA 64
           ++FRGVRQR WGSWVSEIRHPLLK R+WLGTF+TAEDAARAYD+AA LM G  A+TNFP 
Sbjct: 6   QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 65

Query: 65  SNDQSEEASHRHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVWQKRA 124
           + +    +         S K LS  L+ KL KC       +  L++          Q   
Sbjct: 66  NPNAIPTS---------SSKLLSATLTAKLHKC------YMASLQMTKQTQTQTQTQTAR 125

Query: 125 GTRATSNWVMRIELGKKEIPSPESTSQEADGHGNGID-----EEDRIAMQMIEELLNW 178
              A S+ V   E       +  +  +  DG+ N        EED I  QMIEELL++
Sbjct: 126 SQSADSDGVTANESHLNRGVTETTEIKWEDGNANMQQNFRPLEEDHIE-QMIEELLHY 167

[Close]

BLAST of HG10013589 vs. ExPASy Swiss-Prot
Match: P16146 (Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=PPLZ02 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.0e-19
Identity = 50/93 (53.76%), Postives = 64/93 (68.82%), Query Frame = 0


Query: 5  RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPA 64
          +++RG RQR WGSWVSEIRH +LK R+W GTF++AEDAARAYD+AA LM G  A+TNFP 
Sbjct: 6  QRYRGFRQRHWGSWVSEIRHSILKTRIWQGTFESAEDAARAYDEAARLMCGTRARTNFPY 65

Query: 65 SNDQSEEASHRHGSSPMSPKALSELLSTKLRKC 98
          + + S+ +         S K LS  L  KL +C
Sbjct: 66 NPNASQSS---------SSKLLSATLIAKLHRC 89

[Close]

BLAST of HG10013589 vs. ExPASy TrEMBL
Match: A0A6J1FE03 (ethylene-responsive transcription factor SHINE 2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443124 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 9.2e-96
Identity = 178/190 (93.68%), Postives = 179/190 (94.21%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT
Sbjct: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60

Query: 61  NFPASNDQSEEASHRHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120
           NFPAS DQS EASH HGSSPM+PKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW
Sbjct: 61  NFPASKDQSAEASHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120

Query: 121 QKRAGTRATSNWVMRIELGKKEI----PSPESTSQEADGHGNGIDEEDRIAMQMIEELLN 180
           QKRAGTRATSNWVMRIELGKKEI    PSPESTSQE DGH NGIDEEDRIAMQMIEELLN
Sbjct: 121 QKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEPDGHRNGIDEEDRIAMQMIEELLN 180

Query: 181 WNCPFPSTSS 187
           WNCP PS SS
Sbjct: 181 WNCPLPSISS 190

[Close]

BLAST of HG10013589 vs. ExPASy TrEMBL
Match: A0A6J1F8L5 (ethylene-responsive transcription factor SHINE 2 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443124 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 9.2e-96
Identity = 178/190 (93.68%), Postives = 179/190 (94.21%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT
Sbjct: 6   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 65

Query: 61  NFPASNDQSEEASHRHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120
           NFPAS DQS EASH HGSSPM+PKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW
Sbjct: 66  NFPASKDQSAEASHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 125

Query: 121 QKRAGTRATSNWVMRIELGKKEI----PSPESTSQEADGHGNGIDEEDRIAMQMIEELLN 180
           QKRAGTRATSNWVMRIELGKKEI    PSPESTSQE DGH NGIDEEDRIAMQMIEELLN
Sbjct: 126 QKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEPDGHRNGIDEEDRIAMQMIEELLN 185

Query: 181 WNCPFPSTSS 187
           WNCP PS SS
Sbjct: 186 WNCPLPSISS 195

[Close]

BLAST of HG10013589 vs. ExPASy TrEMBL
Match: A0A0A0LJA8 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G878210 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.2e-95
Identity = 178/194 (91.75%), Postives = 180/194 (92.78%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT
Sbjct: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60

Query: 61  NFPASNDQSEEASHRHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120
           NFPAS D SEEASH HGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLD DNAHIGVW
Sbjct: 61  NFPASKDHSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDCDNAHIGVW 120

Query: 121 QKRAGTRATSNWVMRIELGKKEIPSPESTSQEADGHGNG--------IDEEDRIAMQMIE 180
           QKRAGTRATSNWVMRIELGKKE+PSPESTSQEADG G+G        IDEEDRIAMQMIE
Sbjct: 121 QKRAGTRATSNWVMRIELGKKEVPSPESTSQEADGDGDGDGDDHQNEIDEEDRIAMQMIE 180

Query: 181 ELLNWNCPFPSTSS 187
           ELLNWNCP PSTSS
Sbjct: 181 ELLNWNCPLPSTSS 194

[Close]

BLAST of HG10013589 vs. ExPASy TrEMBL
Match: A0A6J1IIU8 (ethylene-responsive transcription factor SHINE 2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111476664 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 7.8e-95
Identity = 179/192 (93.23%), Postives = 180/192 (93.75%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT
Sbjct: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60

Query: 61  NFPASNDQSEEAS--HRHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG 120
           NFPAS DQS EAS  H HGSSPM+PKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG
Sbjct: 61  NFPASKDQSAEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG 120

Query: 121 VWQKRAGTRATSNWVMRIELGKKEI----PSPESTSQEADGHGNGIDEEDRIAMQMIEEL 180
           VWQKRAGTRATSNWVMRIELGKKEI    PSPESTSQEADGH NGIDEEDRIAMQMIEEL
Sbjct: 121 VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEADGHRNGIDEEDRIAMQMIEEL 180

Query: 181 LNWNCPFPSTSS 187
           LNWNCP PS SS
Sbjct: 181 LNWNCPLPSISS 192

[Close]

BLAST of HG10013589 vs. ExPASy TrEMBL
Match: A0A6J1IGA2 (ethylene-responsive transcription factor SHINE 2 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111476664 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 7.8e-95
Identity = 179/192 (93.23%), Postives = 180/192 (93.75%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT
Sbjct: 6   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 65

Query: 61  NFPASNDQSEEAS--HRHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG 120
           NFPAS DQS EAS  H HGSSPM+PKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG
Sbjct: 66  NFPASKDQSAEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG 125

Query: 121 VWQKRAGTRATSNWVMRIELGKKEI----PSPESTSQEADGHGNGIDEEDRIAMQMIEEL 180
           VWQKRAGTRATSNWVMRIELGKKEI    PSPESTSQEADGH NGIDEEDRIAMQMIEEL
Sbjct: 126 VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEADGHRNGIDEEDRIAMQMIEEL 185

Query: 181 LNWNCPFPSTSS 187
           LNWNCP PS SS
Sbjct: 186 LNWNCPLPSISS 197

[Close]

BLAST of HG10013589 vs. TAIR 10
Match: AT5G25390.2 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 231.5 bits (589), Expect = 5.6e-61
Identity = 116/182 (63.74%), Postives = 139/182 (76.37%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MV+S+KFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAE AARAYDQAA+LMNGQ+AKT
Sbjct: 1   MVHSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKT 60

Query: 61  NFPASNDQSEEASHRHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120
           NFP         S    S+  SPK+LSELL+ KLRK CK+ +P LTCLRLD+D++HIGVW
Sbjct: 61  NFPVIKSNGSN-SLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGVW 120

Query: 121 QKRAGTRATSNWVMRIELGKK--EIPSPESTSQEADGHGNGIDEEDRIAMQMIEELLNWN 180
           QKRAG++ + NWV  +ELG K    P  +  + +       + E+D++AMQMIEELLNW 
Sbjct: 121 QKRAGSKTSPNWVKLVELGDKVNARPGGDIETNKMKVRNEDVQEDDQMAMQMIEELLNWT 180

[Close]

BLAST of HG10013589 vs. TAIR 10
Match: AT5G11190.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 229.6 bits (584), Expect = 2.1e-60
Identity = 118/189 (62.43%), Postives = 144/189 (76.19%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MV+SRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTF+TAE AARAYDQAA+LMNGQNAKT
Sbjct: 1   MVHSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKT 60

Query: 61  NFPASNDQSEEASHRHGSSP-MSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGV 120
           NFP    +      +  +SP MSPK+LSELL+ KLRK CK+ +PSLTCLRLD+D++HIGV
Sbjct: 61  NFPVVKSEEGSDHVKDVNSPLMSPKSLSELLNAKLRKSCKDLTPSLTCLRLDTDSSHIGV 120

Query: 121 WQKRAGTRATSNWVMRIELGKKEIPS----------PESTSQEADGHGNGIDEEDRIAMQ 179
           WQKRAG++ +  WVMR+ELG     S           ++  +E +     I +ED++AM+
Sbjct: 121 WQKRAGSKTSPTWVMRLELGNVVNESAVDLGLTTMNKQNVEKEEEEEEAIISDEDQLAME 180

[Close]

BLAST of HG10013589 vs. TAIR 10
Match: AT5G25390.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 220.7 bits (561), Expect = 9.8e-58
Identity = 113/182 (62.09%), Postives = 136/182 (74.73%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MV+S+KFRGVRQRQWGSWVSEIRHPLL   VWLGTFDTAE AARAYDQAA+LMNGQ+AKT
Sbjct: 1   MVHSKKFRGVRQRQWGSWVSEIRHPLL---VWLGTFDTAETAARAYDQAAVLMNGQSAKT 60

Query: 61  NFPASNDQSEEASHRHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120
           NFP         S    S+  SPK+LSELL+ KLRK CK+ +P LTCLRLD+D++HIGVW
Sbjct: 61  NFPVIKSNGSN-SLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGVW 120

Query: 121 QKRAGTRATSNWVMRIELGKK--EIPSPESTSQEADGHGNGIDEEDRIAMQMIEELLNWN 180
           QKRAG++ + NWV  +ELG K    P  +  + +       + E+D++AMQMIEELLNW 
Sbjct: 121 QKRAGSKTSPNWVKLVELGDKVNARPGGDIETNKMKVRNEDVQEDDQMAMQMIEELLNWT 178

[Close]

BLAST of HG10013589 vs. TAIR 10
Match: AT1G15360.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 219.2 bits (557), Expect = 2.9e-57
Identity = 114/205 (55.61%), Postives = 145/205 (70.73%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MV ++KFRGVRQR WGSWV+EIRHPLLKRR+WLGTF+TAE+AARAYD+AA+LM+G+NAKT
Sbjct: 1   MVQTKKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKT 60

Query: 61  NFPASNDQSEEASHRHG--------SSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDS 120
           NFP +N+ + E S            SS  S  +LS +LS KLRKCCK+PSPSLTCLRLD+
Sbjct: 61  NFPLNNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKCCKSPSPSLTCLRLDT 120

Query: 121 DNAHIGVWQKRAGTRATSNWVMRIELGKKEIPSPESTSQEADGHGNG------------- 179
            ++HIGVWQKRAG+++ S+WVM +ELG      P S+SQE     +              
Sbjct: 121 ASSHIGVWQKRAGSKSDSSWVMTVELG------PASSSQETTSKASQDAILAPTTEVEIG 180

[Close]

BLAST of HG10013589 vs. TAIR 10
Match: AT5G25190.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-24
Identity = 76/178 (42.70%), Postives = 96/178 (53.93%), Query Frame = 0


Query: 5   RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPA 64
           ++FRGVRQR WGSWVSEIRHPLLK R+WLGTF+TAEDAARAYD+AA LM G  A+TNFP 
Sbjct: 6   QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 65

Query: 65  SNDQSEEASHRHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVWQKRA 124
           + +    +         S K LS  L+ KL KC       +  L++          Q   
Sbjct: 66  NPNAIPTS---------SSKLLSATLTAKLHKC------YMASLQMTKQTQTQTQTQTAR 125

Query: 125 GTRATSNWVMRIELGKKEIPSPESTSQEADGHGNGID-----EEDRIAMQMIEELLNW 178
              A S+ V   E       +  +  +  DG+ N        EED I  QMIEELL++
Sbjct: 126 SQSADSDGVTANESHLNRGVTETTEIKWEDGNANMQQNFRPLEEDHIE-QMIEELLHY 167

The following BLAST results are available for this feature:

BLAST of HG10013589 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022936545.1	1.9e-95	93.68	ethylene-responsive transcription factor SHINE 2 isoform X2 [Cucurbita moschata]...	[more]
XP_022936544.1	1.9e-95	93.68	ethylene-responsive transcription factor SHINE 2 isoform X1 [Cucurbita moschata]	[more]
XP_004136348.1	2.5e-95	91.75	ethylene-responsive transcription factor SHINE 2 [Cucumis sativus] >XP_011652482...	[more]
KAG6591574.1	4.2e-95	93.16	Ethylene-responsive transcription factor SHINE 3, partial [Cucurbita argyrosperm...	[more]
XP_038899931.1	7.2e-95	93.68	ethylene-responsive transcription factor SHINE 2-like isoform X3 [Benincasa hisp...	[more]

BLAST of HG10013589 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3E958	7.8e-60	63.74	Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702...	[more]
Q9LFN7	3.0e-59	62.43	Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702...	[more]
Q9XI33	4.0e-56	55.61	Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q94AW5	2.0e-23	42.70	Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 ...	[more]
P16146	1.0e-19	53.76	Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=PPLZ02 PE=2 SV=1	[more]

BLAST of HG10013589 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FE03	9.2e-96	93.68	ethylene-responsive transcription factor SHINE 2 isoform X2 OS=Cucurbita moschat...	[more]
A0A6J1F8L5	9.2e-96	93.68	ethylene-responsive transcription factor SHINE 2 isoform X1 OS=Cucurbita moschat...	[more]
A0A0A0LJA8	1.2e-95	91.75	AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G878210 PE=...	[more]
A0A6J1IIU8	7.8e-95	93.23	ethylene-responsive transcription factor SHINE 2 isoform X2 OS=Cucurbita maxima ...	[more]
A0A6J1IGA2	7.8e-95	93.23	ethylene-responsive transcription factor SHINE 2 isoform X1 OS=Cucurbita maxima ...	[more]

BLAST of HG10013589 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25390.2	5.6e-61	63.74	Integrase-type DNA-binding superfamily protein	[more]
AT5G11190.1	2.1e-60	62.43	Integrase-type DNA-binding superfamily protein	[more]
AT5G25390.1	9.8e-58	62.09	Integrase-type DNA-binding superfamily protein	[more]
AT1G15360.1	2.9e-57	55.61	Integrase-type DNA-binding superfamily protein	[more]
AT5G25190.1	1.4e-24	42.70	Integrase-type DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 29..45 score: 72.19 coord: 7..18 score: 60.91
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 6..69 e-value: 6.8E-40 score: 148.5
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 6..55 e-value: 3.6E-13 score: 49.5
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 6..63 score: 21.904358
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 6..65 e-value: 2.99553E-34 score: 113.906
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 5..65 e-value: 4.6E-27 score: 95.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..164
None	No IPR available	PANTHER	PTHR31194:SF13	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2	coord: 1..184
None	No IPR available	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 1..184
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 6..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10013589.1	HG10013589.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity