HG10013569 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10013569
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr02: 2677342 .. 2678504 (-)
RNA-Seq Expression	HG10013569
Synteny	HG10013569

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATGTTGTTCGTCCTTATCAGCGGCTCCTACATCCATGTCTTTGATTACCAACCGCAAATTCACGAGTTCTGTCAATAAACCTGTGATCGTTTCCATGAATTCTCGCTTCAGAGCTTCTGCAGAAGTTCCCGATTTTCTTCCTGCTGATTGGTACGCACACAAACCTCGAGAATTTCGTTTTTCCCCGATTCATTTTCATTTTTCGAGTTTTTGCATCGTATTATTGAATAGCAGAATTTGATCTCGATAGAAATGGGAAGATGATTTCGTTCGTGTTCGGTTGTGAATTCGCATGTCTGAAATTTTCGACTGATTTCGTGCCGTTATCGAGAAATATGGTGTGATTGTGTTTCCTATGACCTTGAGATTACCGAGTCAAGCAATTGTTTGGAAATCAGGTTTCCTTGTTTGGCTAACGGGACAAATTCCTCCATCCTATCACGTTCAGTGATTTTAAAGTATATGGATAATAGGAATTAATCTTTGCATTGAAATTAAATTTATTCTTGATAAGATTATTCGTGATGAGTTGATAATATTTTCTGGTGTTGGAATTCAGATTCCTGCTTTAGTTTCTCCATTCTTCCTCGGGCCAAACAGTTTCATGAAAACTAAATATCTCCATTCATACTCTTCTGCAGGCACGATGCACACAAGAAGGATCCTATAGGTCCAAGACTACATGTAACTGTTAAACTATGCAAGTTAGTACTAGATTTTATAGTTGTTTCTCTGTCCATATCTTCATCTTGAAACTCTCTATATAGTTCACTGCAGAAGAAGCTATTCAACACCAGCTAGATGCACTGAGATTCAACGATCGACCCCATCAAGATTATGGAATTGAGGTCATGTACCAGGTAGTGTGCATTATTAAGGGTCTTTGTTTTTTCATATCGAATACTTGTTTAATGACATGGTGGCCTGTAAATTAAACACATCTCAACAAATCACAGTTTGCGGGGTTCGATCCTCTTCGAAGGTCAACATATTTCGGTCCCTTCTTTGATTTGGGACAGGTACCATTTGAAACTTCAGAAATTTATATAAGCAATACTGTATCTGCTCAGTGTTTTTCATGATTTGCTACATTTTTGACAGTGCAGTTTGAAAGATTTAGACGAGTATTCCACCATTCAACTTATCGTGTATTGTTAG

mRNA sequence

ATGTCATGTTGTTCGTCCTTATCAGCGGCTCCTACATCCATGTCTTTGATTACCAACCGCAAATTCACGAGTTCTGTCAATAAACCTGTGATCGTTTCCATGAATTCTCGCTTCAGAGCTTCTGCAGAAGTTCCCGATTTTCTTCCTGCTGATTGGCACGATGCACACAAGAAGGATCCTATAGGTCCAAGACTACATTTCACTGCAGAAGAAGCTATTCAACACCAGCTAGATGCACTGAGATTCAACGATCGACCCCATCAAGATTATGGAATTGAGGTCATGTACCAGTTTGCGGGGTTCGATCCTCTTCGAAGGTCAACATATTTCGGTCCCTTCTTTGATTTGGGACAGTGCAGTTTGAAAGATTTAGACGAGTATTCCACCATTCAACTTATCGTGTATTGTTAG

Coding sequence (CDS)

ATGTCATGTTGTTCGTCCTTATCAGCGGCTCCTACATCCATGTCTTTGATTACCAACCGCAAATTCACGAGTTCTGTCAATAAACCTGTGATCGTTTCCATGAATTCTCGCTTCAGAGCTTCTGCAGAAGTTCCCGATTTTCTTCCTGCTGATTGGCACGATGCACACAAGAAGGATCCTATAGGTCCAAGACTACATTTCACTGCAGAAGAAGCTATTCAACACCAGCTAGATGCACTGAGATTCAACGATCGACCCCATCAAGATTATGGAATTGAGGTCATGTACCAGTTTGCGGGGTTCGATCCTCTTCGAAGGTCAACATATTTCGGTCCCTTCTTTGATTTGGGACAGTGCAGTTTGAAAGATTTAGACGAGTATTCCACCATTCAACTTATCGTGTATTGTTAG

Protein sequence

MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQCSLKDLDEYSTIQLIVYC

Homology

[Close]

BLAST of HG10013569 vs. NCBI nr
Match: XP_031739417.1 (uncharacterized protein LOC101205248 isoform X2 [Cucumis sativus])

HSP 1 Score: 240.7 bits (613), Expect = 7.2e-60
Identity = 115/118 (97.46%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHKKDP 60
           MSCCSSLSAAP+SMSLITNRKFTSSVNKP+IVSMNSRFRASAEVPDFLPADWHDAHKKDP
Sbjct: 1   MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDP 60

Query: 61  IGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQ 119
           IGPRLHFTAEEAIQHQLDALR+NDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQ
Sbjct: 61  IGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQ 118

[Close]

BLAST of HG10013569 vs. NCBI nr
Match: XP_004136341.2 (uncharacterized protein LOC101205248 isoform X1 [Cucumis sativus])

HSP 1 Score: 240.7 bits (613), Expect = 7.2e-60
Identity = 115/118 (97.46%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHKKDP 60
           MSCCSSLSAAP+SMSLITNRKFTSSVNKP+IVSMNSRFRASAEVPDFLPADWHDAHKKDP
Sbjct: 1   MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDP 60

Query: 61  IGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQ 119
           IGPRLHFTAEEAIQHQLDALR+NDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQ
Sbjct: 61  IGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQ 118

[Close]

BLAST of HG10013569 vs. NCBI nr
Match: XP_038898556.1 (uncharacterized protein LOC120086152 [Benincasa hispida])

HSP 1 Score: 240.4 bits (612), Expect = 9.4e-60
Identity = 116/118 (98.31%), Postives = 117/118 (99.15%), Query Frame = 0


Query: 1   MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHKKDP 60
           MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSM SRFRASAEVPDFLPADWHDAHKKDP
Sbjct: 48  MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMYSRFRASAEVPDFLPADWHDAHKKDP 107

Query: 61  IGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQ 119
           IGPRLHFTAEEAIQHQLDALR+NDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQ
Sbjct: 108 IGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQ 165

[Close]

BLAST of HG10013569 vs. NCBI nr
Match: XP_008466381.1 (PREDICTED: uncharacterized protein LOC103503805 [Cucumis melo] >KAA0038797.1 uncharacterized protein E6C27_scaffold92G003520 [Cucumis melo var. makuwa] >TYK31418.1 uncharacterized protein E5676_scaffold455G007270 [Cucumis melo var. makuwa])

HSP 1 Score: 238.4 bits (607), Expect = 3.6e-59
Identity = 114/118 (96.61%), Postives = 116/118 (98.31%), Query Frame = 0


Query: 1   MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHKKDP 60
           MSCCSSLSAAP+SMSLITNRKFTSSVNKPV VSMNSRFR SAEVPDFLPADWHDAHKKDP
Sbjct: 1   MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDP 60

Query: 61  IGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQ 119
           IGPRLHFTAEEAIQHQLDALR+NDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQ
Sbjct: 61  IGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQ 118

[Close]

BLAST of HG10013569 vs. NCBI nr
Match: XP_022132533.1 (uncharacterized protein LOC111005365 isoform X1 [Momordica charantia])

HSP 1 Score: 221.1 bits (562), Expect = 5.9e-54
Identity = 105/118 (88.98%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHKKDP 60
           MSCCSSLSAAPTSMSLIT RKF  +V+KP IVSMNSRFRASAEVPDFLPADW++AHKK+P
Sbjct: 1   MSCCSSLSAAPTSMSLITKRKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNP 60

Query: 61  IGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQ 119
           +GP LHFTAEEAIQHQLDALR+ND+PHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQ
Sbjct: 61  LGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQ 118

[Close]

BLAST of HG10013569 vs. ExPASy TrEMBL
Match: A0A0A0LED5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G878870 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.5e-60
Identity = 115/118 (97.46%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHKKDP 60
           MSCCSSLSAAP+SMSLITNRKFTSSVNKP+IVSMNSRFRASAEVPDFLPADWHDAHKKDP
Sbjct: 1   MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDP 60

Query: 61  IGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQ 119
           IGPRLHFTAEEAIQHQLDALR+NDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQ
Sbjct: 61  IGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQ 118

[Close]

BLAST of HG10013569 vs. ExPASy TrEMBL
Match: A0A5D3E6H6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007270 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.7e-59
Identity = 114/118 (96.61%), Postives = 116/118 (98.31%), Query Frame = 0


Query: 1   MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHKKDP 60
           MSCCSSLSAAP+SMSLITNRKFTSSVNKPV VSMNSRFR SAEVPDFLPADWHDAHKKDP
Sbjct: 1   MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDP 60

Query: 61  IGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQ 119
           IGPRLHFTAEEAIQHQLDALR+NDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQ
Sbjct: 61  IGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQ 118

[Close]

BLAST of HG10013569 vs. ExPASy TrEMBL
Match: A0A1S3CR52 (uncharacterized protein LOC103503805 OS=Cucumis melo OX=3656 GN=LOC103503805 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.7e-59
Identity = 114/118 (96.61%), Postives = 116/118 (98.31%), Query Frame = 0


Query: 1   MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHKKDP 60
           MSCCSSLSAAP+SMSLITNRKFTSSVNKPV VSMNSRFR SAEVPDFLPADWHDAHKKDP
Sbjct: 1   MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDP 60

Query: 61  IGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQ 119
           IGPRLHFTAEEAIQHQLDALR+NDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQ
Sbjct: 61  IGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQ 118

[Close]

BLAST of HG10013569 vs. ExPASy TrEMBL
Match: A0A6J1BWI6 (uncharacterized protein LOC111005365 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005365 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.9e-54
Identity = 105/118 (88.98%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHKKDP 60
           MSCCSSLSAAPTSMSLIT RKF  +V+KP IVSMNSRFRASAEVPDFLPADW++AHKK+P
Sbjct: 1   MSCCSSLSAAPTSMSLITKRKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNP 60

Query: 61  IGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQ 119
           +GP LHFTAEEAIQHQLDALR+ND+PHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQ
Sbjct: 61  LGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQ 118

[Close]

BLAST of HG10013569 vs. ExPASy TrEMBL
Match: A0A6J1IYU2 (uncharacterized protein LOC111480415 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480415 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.9e-54
Identity = 106/118 (89.83%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHKKDP 60
           MSCCSSLSAAPTSMSLI+ RKFT SVNK VIVSMNSRFRASAEVPDFLPADWH AHKK+P
Sbjct: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60

Query: 61  IGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQ 119
           +GP LHFTAEEAIQ QLDALR+NDRPHQDYGIEVMYQFAGF+PL+RSTYFGPFFDLGQ
Sbjct: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQ 118

[Close]

BLAST of HG10013569 vs. TAIR 10
Match: AT2G25605.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 75 Blast hits to 75 proteins in 20 species: Archae - 2; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink). )

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-30
Identity = 55/79 (69.62%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 40  ASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFA 99
           +S++VPDFL ADW ++ +K P GPRL F+AE+A++HQLDAL++ND P  DYGIEVMY+FA
Sbjct: 36  SSSDVPDFLSADWLESRRKRPFGPRLDFSAEDAVRHQLDALKYNDHPRDDYGIEVMYRFA 95

Query: 100 GFDPLRRSTYFGPFFDLGQ 119
           GFDP  RSTYFGPFFDLGQ
Sbjct: 96  GFDPFERSTYFGPFFDLGQ 114

The following BLAST results are available for this feature:

BLAST of HG10013569 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739417.1	7.2e-60	97.46	uncharacterized protein LOC101205248 isoform X2 [Cucumis sativus]	[more]
XP_004136341.2	7.2e-60	97.46	uncharacterized protein LOC101205248 isoform X1 [Cucumis sativus]	[more]
XP_038898556.1	9.4e-60	98.31	uncharacterized protein LOC120086152 [Benincasa hispida]	[more]
XP_008466381.1	3.6e-59	96.61	PREDICTED: uncharacterized protein LOC103503805 [Cucumis melo] >KAA0038797.1 unc...	[more]
XP_022132533.1	5.9e-54	88.98	uncharacterized protein LOC111005365 isoform X1 [Momordica charantia]	[more]

BLAST of HG10013569 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10013569 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LED5	3.5e-60	97.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G878870 PE=4 SV=1	[more]
A0A5D3E6H6	1.7e-59	96.61	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CR52	1.7e-59	96.61	uncharacterized protein LOC103503805 OS=Cucumis melo OX=3656 GN=LOC103503805 PE=...	[more]
A0A6J1BWI6	2.9e-54	88.98	uncharacterized protein LOC111005365 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1IYU2	4.9e-54	89.83	uncharacterized protein LOC111480415 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of HG10013569 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G25605.1	1.3e-30	69.62	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35716	OS05G0574700 PROTEIN-RELATED	coord: 1..119
None	No IPR available	PANTHER	PTHR35716:SF1	OS05G0574700 PROTEIN	coord: 1..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10013569.1	HG10013569.1	mRNA