HG10013561 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10013561
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionpolyadenylate-binding protein-interacting protein 5
LocationChr02: 2638280 .. 2639063 (+)
RNA-Seq ExpressionHG10013561
SyntenyHG10013561
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCCACATGGATCATCTTTGAATCCGTATGCAACATCCTACATTCCAATCTCCCAGAGAGGGGCTAACAGAACTTTTATAGCAGAAAACTCTCCAAGGGAAATTATCGGGGCTAACTTGCCGGGATATTCTGAACAGGGTGTATATAATCCTCCATATAGCAACATTTCCCCTCGTTTAAATATGCATCATGGTAAAAAGGCACCTGTTGCAGCTGCTTCTGCTGTGAGGAATCACCCTTTTCATGGATCATTATCACAACACAGTGGTGATTTGACAGAAATGGAGATGTTTGATAGAGAAGTTAACATGGATCTGGAATTGCTTCAAGTCAGTTTCCCTGGACTATCTGAACAGTCCCTTACTGATGTCTATTTTGCAAACAAAGGTGATTTGGATGCTGCTATAGACATGCTGAGCCAGCTTGAGGTTTTCTCTATCTGCCCTTGTTCAATTTCTTGCTTTTATCGTAAACTGTTGTTTTAGTTACTACTGAACAAACTTGGTTGATGAACATTGTTTGTGCTTGTGATTTGCATTATTTATAGCATGTATAGATCTTGTACACGTTGTGAATGGTAAATATGGTTAACTAACTCTTTTGTCGGTTTAATTTGATATTTAGAACAAACATCCATCTGATGTTGAATACGACCCTGAAAGTCTCCCAGACACTTTGGACATCGGTGATATCTCTGAATCCGGGTTTGTAGCTGTCGATCAACCCTCTTTCAGAATGAAGAATGTAGCCAATGACGCAAGTACTTCATCCAGATTCTAG

mRNA sequence

ATGAAGCCACATGGATCATCTTTGAATCCGTATGCAACATCCTACATTCCAATCTCCCAGAGAGGGGCTAACAGAACTTTTATAGCAGAAAACTCTCCAAGGGAAATTATCGGGGCTAACTTGCCGGGATATTCTGAACAGGGTGTATATAATCCTCCATATAGCAACATTTCCCCTCGTTTAAATATGCATCATGGTAAAAAGGCACCTGTTGCAGCTGCTTCTGCTGTGAGGAATCACCCTTTTCATGGATCATTATCACAACACAGTGGTGATTTGACAGAAATGGAGATGTTTGATAGAGAAGTTAACATGGATCTGGAATTGCTTCAAGTCAGTTTCCCTGGACTATCTGAACAGTCCCTTACTGATGTCTATTTTGCAAACAAAGGTGATTTGGATGCTGCTATAGACATGCTGAGCCAGCTTGAGAACAAACATCCATCTGATGTTGAATACGACCCTGAAAGTCTCCCAGACACTTTGGACATCGGTGATATCTCTGAATCCGGGTTTGTAGCTGTCGATCAACCCTCTTTCAGAATGAAGAATGTAGCCAATGACGCAAGTACTTCATCCAGATTCTAG

Coding sequence (CDS)

ATGAAGCCACATGGATCATCTTTGAATCCGTATGCAACATCCTACATTCCAATCTCCCAGAGAGGGGCTAACAGAACTTTTATAGCAGAAAACTCTCCAAGGGAAATTATCGGGGCTAACTTGCCGGGATATTCTGAACAGGGTGTATATAATCCTCCATATAGCAACATTTCCCCTCGTTTAAATATGCATCATGGTAAAAAGGCACCTGTTGCAGCTGCTTCTGCTGTGAGGAATCACCCTTTTCATGGATCATTATCACAACACAGTGGTGATTTGACAGAAATGGAGATGTTTGATAGAGAAGTTAACATGGATCTGGAATTGCTTCAAGTCAGTTTCCCTGGACTATCTGAACAGTCCCTTACTGATGTCTATTTTGCAAACAAAGGTGATTTGGATGCTGCTATAGACATGCTGAGCCAGCTTGAGAACAAACATCCATCTGATGTTGAATACGACCCTGAAAGTCTCCCAGACACTTTGGACATCGGTGATATCTCTGAATCCGGGTTTGTAGCTGTCGATCAACCCTCTTTCAGAATGAAGAATGTAGCCAATGACGCAAGTACTTCATCCAGATTCTAG

Protein sequence

MKPHGSSLNPYATSYIPISQRGANRTFIAENSPREIIGANLPGYSEQGVYNPPYSNISPRLNMHHGKKAPVAAASAVRNHPFHGSLSQHSGDLTEMEMFDREVNMDLELLQVSFPGLSEQSLTDVYFANKGDLDAAIDMLSQLENKHPSDVEYDPESLPDTLDIGDISESGFVAVDQPSFRMKNVANDASTSSRF
Homology
BLAST of HG10013561 vs. NCBI nr
Match: XP_038900178.1 (polyadenylate-binding protein-interacting protein 5-like [Benincasa hispida])

HSP 1 Score: 358.6 bits (919), Expect = 3.4e-95
Identity = 184/211 (87.20%), Postives = 187/211 (88.63%), Query Frame = 0

Query: 1   MKPHGSSLNPYATSYIPISQRGANRTFIAENS----------------PREIIGANLPGY 60
           M PHGSSLNPYATSYIP+SQRGANRTF+AENS                 RE IGANLPGY
Sbjct: 1   MNPHGSSLNPYATSYIPLSQRGANRTFVAENSSRENIGSKRTFIVENASRENIGANLPGY 60

Query: 61  SEQGVYNPPYSNISPRLNMHHGKKAPVAAASAVRNHPFHGSLSQHSGDLTEMEMFDREVN 120
           SEQ VYNPPYSNISPRLNMHHGKKAPVAAASAV+NHPFHGSLSQ SGDLTEMEMFDREVN
Sbjct: 61  SEQCVYNPPYSNISPRLNMHHGKKAPVAAASAVKNHPFHGSLSQQSGDLTEMEMFDREVN 120

Query: 121 MDLELLQVSFPGLSEQSLTDVYFANKGDLDAAIDMLSQLENKHPSDVEYDPESLPDTLDI 180
           MDLELLQVSFPGLSEQSLTDVYFANKGDLDAAIDMLSQLENKHP DVEYDPESLPDTLDI
Sbjct: 121 MDLELLQVSFPGLSEQSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDPESLPDTLDI 180

Query: 181 GDISESGFVAVDQPSFRMKNVANDASTSSRF 196
           GDISESGFVAVDQ SFRMKNVAN ASTSSRF
Sbjct: 181 GDISESGFVAVDQASFRMKNVANHASTSSRF 211

BLAST of HG10013561 vs. NCBI nr
Match: XP_004136335.1 (polyadenylate-binding protein-interacting protein 5 [Cucumis sativus] >KGN60127.1 hypothetical protein Csa_002673 [Cucumis sativus])

HSP 1 Score: 342.4 bits (877), Expect = 2.5e-90
Identity = 175/196 (89.29%), Postives = 182/196 (92.86%), Query Frame = 0

Query: 1   MKPHGSSLNPYATSYIPISQRGANRTFIAENSPREIIGANLPGYSEQGVYNPPYSN-ISP 60
           MKPHGSSLNP+ATSYIP+SQRGANRTFI EN+ RE IGANLPGYSEQ VYNPPY+N ISP
Sbjct: 1   MKPHGSSLNPFATSYIPLSQRGANRTFIGENTSRENIGANLPGYSEQCVYNPPYNNSISP 60

Query: 61  RLNMHHGKKAPVAAASAVRNHPFHGSLSQHSGDLTEMEMFDREVNMDLELLQVSFPGLSE 120
           RLNM+HGKKA VA A AV+NHPF GSLSQ S DLTEMEMFDREVNMD+ELLQVSFPGLSE
Sbjct: 61  RLNMNHGKKASVAGA-AVKNHPFLGSLSQQSSDLTEMEMFDREVNMDIELLQVSFPGLSE 120

Query: 121 QSLTDVYFANKGDLDAAIDMLSQLENKHPSDVEYDPESLPDTLDIGDISESGFVAVDQPS 180
           QSLTDVYFANKGDLDAAIDMLSQLENKHP DVEYDPESLPDTLDIGDISESGFV VDQPS
Sbjct: 121 QSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDPESLPDTLDIGDISESGFVTVDQPS 180

Query: 181 FRMKNVANDASTSSRF 196
           FRMKNVAN ASTSSRF
Sbjct: 181 FRMKNVANQASTSSRF 195

BLAST of HG10013561 vs. NCBI nr
Match: KAA0038789.1 (polyadenylate-binding protein-interacting protein 5 [Cucumis melo var. makuwa] >TYK31409.1 polyadenylate-binding protein-interacting protein 5 [Cucumis melo var. makuwa])

HSP 1 Score: 340.1 bits (871), Expect = 1.2e-89
Identity = 173/196 (88.27%), Postives = 184/196 (93.88%), Query Frame = 0

Query: 1   MKPHGSSLNPYATSYIPISQRGANRTFIAENSPREIIGANLPGYSEQGVYNPPYSN-ISP 60
           MKPHGSSLNP+ATSYIP+SQRGANRTFIAEN+ RE IGAN+PGYSEQ +Y PPY+N ISP
Sbjct: 32  MKPHGSSLNPFATSYIPLSQRGANRTFIAENTSRENIGANVPGYSEQCLY-PPYNNSISP 91

Query: 61  RLNMHHGKKAPVAAASAVRNHPFHGSLSQHSGDLTEMEMFDREVNMDLELLQVSFPGLSE 120
           RLNM+HGKKA VAA+SAV+NHPFHGSLSQ S DL+EME+FDREVNMDLELLQVSFPGLSE
Sbjct: 92  RLNMNHGKKASVAASSAVKNHPFHGSLSQQSSDLSEMEIFDREVNMDLELLQVSFPGLSE 151

Query: 121 QSLTDVYFANKGDLDAAIDMLSQLENKHPSDVEYDPESLPDTLDIGDISESGFVAVDQPS 180
           QSLTDVYFANKGDLDAAIDMLSQLENKHP DVEYD ESLPDTLDIGDISESGFV VDQPS
Sbjct: 152 QSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDSESLPDTLDIGDISESGFVTVDQPS 211

Query: 181 FRMKNVANDASTSSRF 196
           FRMKNVAN ASTSSRF
Sbjct: 212 FRMKNVANQASTSSRF 226

BLAST of HG10013561 vs. NCBI nr
Match: XP_008466368.1 (PREDICTED: polyadenylate-binding protein-interacting protein 5 [Cucumis melo])

HSP 1 Score: 340.1 bits (871), Expect = 1.2e-89
Identity = 173/196 (88.27%), Postives = 184/196 (93.88%), Query Frame = 0

Query: 1   MKPHGSSLNPYATSYIPISQRGANRTFIAENSPREIIGANLPGYSEQGVYNPPYSN-ISP 60
           MKPHGSSLNP+ATSYIP+SQRGANRTFIAEN+ RE IGAN+PGYSEQ +Y PPY+N ISP
Sbjct: 1   MKPHGSSLNPFATSYIPLSQRGANRTFIAENTSRENIGANVPGYSEQCLY-PPYNNSISP 60

Query: 61  RLNMHHGKKAPVAAASAVRNHPFHGSLSQHSGDLTEMEMFDREVNMDLELLQVSFPGLSE 120
           RLNM+HGKKA VAA+SAV+NHPFHGSLSQ S DL+EME+FDREVNMDLELLQVSFPGLSE
Sbjct: 61  RLNMNHGKKASVAASSAVKNHPFHGSLSQQSSDLSEMEIFDREVNMDLELLQVSFPGLSE 120

Query: 121 QSLTDVYFANKGDLDAAIDMLSQLENKHPSDVEYDPESLPDTLDIGDISESGFVAVDQPS 180
           QSLTDVYFANKGDLDAAIDMLSQLENKHP DVEYD ESLPDTLDIGDISESGFV VDQPS
Sbjct: 121 QSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDSESLPDTLDIGDISESGFVTVDQPS 180

Query: 181 FRMKNVANDASTSSRF 196
           FRMKNVAN ASTSSRF
Sbjct: 181 FRMKNVANQASTSSRF 195

BLAST of HG10013561 vs. NCBI nr
Match: KAG7024479.1 (Polyadenylate-binding protein-interacting protein 5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 270.4 bits (690), Expect = 1.2e-68
Identity = 142/196 (72.45%), Postives = 159/196 (81.12%), Query Frame = 0

Query: 1   MKPHGSSLNPYATSYIPISQRGANRTFIAENSPREIIGANLPGYSEQGVYNPPYSNISPR 60
           MKPHGSSLNPYATSYIPIS+R AN+ FIAE+S RE IGANLPG SEQ +           
Sbjct: 65  MKPHGSSLNPYATSYIPISKREANKAFIAESSSRENIGANLPGNSEQKMCG--------- 124

Query: 61  LNMHHGKKAP-VAAASAVRNHPFHGSLSQHSGDLTEMEMFDREVNMDLELLQVSFPGLSE 120
           LN+ +GKKAP  A ASAV+NHPFHGSLS+ + +  EME F  EVNM+LELLQ+ FPGLSE
Sbjct: 125 LNLRNGKKAPDDAVASAVKNHPFHGSLSKDNSEFAEMETFHTEVNMELELLQICFPGLSE 184

Query: 121 QSLTDVYFANKGDLDAAIDMLSQLENKHPSDVEYDPESLPDTLDIGDISESGFVAVDQPS 180
           QSLTDVYFAN  DLDAA+DML+QLENKHPSD EYDPESLPD+LDIGDISESGF A DQ S
Sbjct: 185 QSLTDVYFANNADLDAAMDMLNQLENKHPSDFEYDPESLPDSLDIGDISESGFAAADQLS 244

Query: 181 FRMKNVANDASTSSRF 196
            RMKNVA+ ASTS+RF
Sbjct: 245 SRMKNVASGASTSTRF 251

BLAST of HG10013561 vs. ExPASy Swiss-Prot
Match: Q6NQH9 (Polyadenylate-binding protein-interacting protein 6 OS=Arabidopsis thaliana OX=3702 GN=CID6 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.9e-18
Identity = 70/198 (35.35%), Postives = 104/198 (52.53%), Query Frame = 0

Query: 1   MKPHGSSLNPYATSYIPISQRGANRTF---IAENSPREIIGANLP--GYSEQGVYNPPYS 60
           MK   S+LNPYA +Y+P+S+R  +      + +   ++      P  GY  QG+ +   +
Sbjct: 1   MKSGSSTLNPYAAAYVPLSKREGSLVDTKPVTQQHMQQQHHQQQPYYGYGVQGMGSYQGT 60

Query: 61  NISPRLNMHHGKKAPVAAASAVRNHPFHGSLSQHSGDLTEMEMFDREVNMDLELLQVSFP 120
            +SP       KK+P   +  V NH              +++  D E++MD+E L  ++P
Sbjct: 61  QMSP-------KKSP---SEMVYNH--------------QLKDEDLEMDMDIEYLLATYP 120

Query: 121 GLSEQSLTDVYFANKGDLDAAIDMLSQLENKHPSDVEYDPESLPDTLDIGDISESGFVAV 180
           GLS++S+ DVY AN  DLDA I+ML+QLE       EY    LPDTLDIGD+ E     +
Sbjct: 121 GLSQESINDVYLANTCDLDATIEMLNQLEIYSTEAEEY----LPDTLDIGDVPE-----I 165

Query: 181 DQPSFRMKNVANDASTSS 194
              S + KN  + AS+SS
Sbjct: 181 ITESSKQKNDGSSASSSS 165

BLAST of HG10013561 vs. ExPASy Swiss-Prot
Match: Q9LYE5 (Polyadenylate-binding protein-interacting protein 5 OS=Arabidopsis thaliana OX=3702 GN=CID5 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.3e-17
Identity = 73/193 (37.82%), Postives = 105/193 (54.40%), Query Frame = 0

Query: 1   MKPHGSSLNPYATSYIPISQRGANRTFIAENSPREIIGANLPGYSEQGVYNPPYSNISPR 60
           MKP   +LNP+A SY+PIS+R                     G  + G+    ++  SP 
Sbjct: 1   MKPGAFALNPHAASYVPISKRVDY------------------GGGDDGLV---FAAKSPT 60

Query: 61  LNMHHGKKAPVAAASAVRNHPFHGSLSQHSGDLTEMEMFDREVNMDLELLQVSFPGLSEQ 120
           + +   KK+   A   +R+            D  ++EM   +++MD+E L V+F GLS++
Sbjct: 61  VEVSMPKKSSEMAYKQIRD------------DDLDLEM---DIDMDIEYLLVTFSGLSQE 120

Query: 121 SLTDVYFANKGDLDAAIDMLSQLENKHPSDVEYDPESLPDTLDIGDISESGFVAVDQPSF 180
           S+TDVY AN GDL+A I+ML+QLE  + ++ E   E+LP+TLDIGDISESG      PS 
Sbjct: 121 SITDVYLANGGDLEATIEMLNQLE-IYSTESE---ENLPETLDIGDISESG------PS- 146

Query: 181 RMKNVANDASTSS 194
             K+    ASTSS
Sbjct: 181 TSKSTEVAASTSS 146

BLAST of HG10013561 vs. ExPASy Swiss-Prot
Match: O64843 (Polyadenylate-binding protein-interacting protein 7 OS=Arabidopsis thaliana OX=3702 GN=CID7 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.3e-04
Identity = 35/88 (39.77%), Postives = 47/88 (53.41%), Query Frame = 0

Query: 80  HPFHGSLSQHS--GDLTEMEMFDREVNMDLELLQVSFPGLSEQSLTDVYFANKGDLDAAI 139
           +PF G  S+H    D+      D EVN  ++ L   FPG + +SL +VYFAN  DL   I
Sbjct: 194 NPFSGK-SRHGFVNDMITESPGDMEVN-PVDFLASQFPGFAAESLAEVYFANGCDLQLTI 253

Query: 140 DMLSQLE-------NKHPSDVEYDPESL 159
           +ML+QLE       N++ S   Y P SL
Sbjct: 254 EMLTQLELQVDGGLNQNISPKTYAPPSL 279

BLAST of HG10013561 vs. ExPASy TrEMBL
Match: A0A0A0LHC3 (CUE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G878960 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.2e-90
Identity = 175/196 (89.29%), Postives = 182/196 (92.86%), Query Frame = 0

Query: 1   MKPHGSSLNPYATSYIPISQRGANRTFIAENSPREIIGANLPGYSEQGVYNPPYSN-ISP 60
           MKPHGSSLNP+ATSYIP+SQRGANRTFI EN+ RE IGANLPGYSEQ VYNPPY+N ISP
Sbjct: 1   MKPHGSSLNPFATSYIPLSQRGANRTFIGENTSRENIGANLPGYSEQCVYNPPYNNSISP 60

Query: 61  RLNMHHGKKAPVAAASAVRNHPFHGSLSQHSGDLTEMEMFDREVNMDLELLQVSFPGLSE 120
           RLNM+HGKKA VA A AV+NHPF GSLSQ S DLTEMEMFDREVNMD+ELLQVSFPGLSE
Sbjct: 61  RLNMNHGKKASVAGA-AVKNHPFLGSLSQQSSDLTEMEMFDREVNMDIELLQVSFPGLSE 120

Query: 121 QSLTDVYFANKGDLDAAIDMLSQLENKHPSDVEYDPESLPDTLDIGDISESGFVAVDQPS 180
           QSLTDVYFANKGDLDAAIDMLSQLENKHP DVEYDPESLPDTLDIGDISESGFV VDQPS
Sbjct: 121 QSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDPESLPDTLDIGDISESGFVTVDQPS 180

Query: 181 FRMKNVANDASTSSRF 196
           FRMKNVAN ASTSSRF
Sbjct: 181 FRMKNVANQASTSSRF 195

BLAST of HG10013561 vs. ExPASy TrEMBL
Match: A0A5A7TBQ8 (Polyadenylate-binding protein-interacting protein 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007180 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 6.0e-90
Identity = 173/196 (88.27%), Postives = 184/196 (93.88%), Query Frame = 0

Query: 1   MKPHGSSLNPYATSYIPISQRGANRTFIAENSPREIIGANLPGYSEQGVYNPPYSN-ISP 60
           MKPHGSSLNP+ATSYIP+SQRGANRTFIAEN+ RE IGAN+PGYSEQ +Y PPY+N ISP
Sbjct: 32  MKPHGSSLNPFATSYIPLSQRGANRTFIAENTSRENIGANVPGYSEQCLY-PPYNNSISP 91

Query: 61  RLNMHHGKKAPVAAASAVRNHPFHGSLSQHSGDLTEMEMFDREVNMDLELLQVSFPGLSE 120
           RLNM+HGKKA VAA+SAV+NHPFHGSLSQ S DL+EME+FDREVNMDLELLQVSFPGLSE
Sbjct: 92  RLNMNHGKKASVAASSAVKNHPFHGSLSQQSSDLSEMEIFDREVNMDLELLQVSFPGLSE 151

Query: 121 QSLTDVYFANKGDLDAAIDMLSQLENKHPSDVEYDPESLPDTLDIGDISESGFVAVDQPS 180
           QSLTDVYFANKGDLDAAIDMLSQLENKHP DVEYD ESLPDTLDIGDISESGFV VDQPS
Sbjct: 152 QSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDSESLPDTLDIGDISESGFVTVDQPS 211

Query: 181 FRMKNVANDASTSSRF 196
           FRMKNVAN ASTSSRF
Sbjct: 212 FRMKNVANQASTSSRF 226

BLAST of HG10013561 vs. ExPASy TrEMBL
Match: A0A1S3CR41 (polyadenylate-binding protein-interacting protein 5 OS=Cucumis melo OX=3656 GN=LOC103503796 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 6.0e-90
Identity = 173/196 (88.27%), Postives = 184/196 (93.88%), Query Frame = 0

Query: 1   MKPHGSSLNPYATSYIPISQRGANRTFIAENSPREIIGANLPGYSEQGVYNPPYSN-ISP 60
           MKPHGSSLNP+ATSYIP+SQRGANRTFIAEN+ RE IGAN+PGYSEQ +Y PPY+N ISP
Sbjct: 1   MKPHGSSLNPFATSYIPLSQRGANRTFIAENTSRENIGANVPGYSEQCLY-PPYNNSISP 60

Query: 61  RLNMHHGKKAPVAAASAVRNHPFHGSLSQHSGDLTEMEMFDREVNMDLELLQVSFPGLSE 120
           RLNM+HGKKA VAA+SAV+NHPFHGSLSQ S DL+EME+FDREVNMDLELLQVSFPGLSE
Sbjct: 61  RLNMNHGKKASVAASSAVKNHPFHGSLSQQSSDLSEMEIFDREVNMDLELLQVSFPGLSE 120

Query: 121 QSLTDVYFANKGDLDAAIDMLSQLENKHPSDVEYDPESLPDTLDIGDISESGFVAVDQPS 180
           QSLTDVYFANKGDLDAAIDMLSQLENKHP DVEYD ESLPDTLDIGDISESGFV VDQPS
Sbjct: 121 QSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDSESLPDTLDIGDISESGFVTVDQPS 180

Query: 181 FRMKNVANDASTSSRF 196
           FRMKNVAN ASTSSRF
Sbjct: 181 FRMKNVANQASTSSRF 195

BLAST of HG10013561 vs. ExPASy TrEMBL
Match: A0A6J1F6U2 (polyadenylate-binding protein-interacting protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111442652 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 5.9e-69
Identity = 142/196 (72.45%), Postives = 159/196 (81.12%), Query Frame = 0

Query: 1   MKPHGSSLNPYATSYIPISQRGANRTFIAENSPREIIGANLPGYSEQGVYNPPYSNISPR 60
           MKPHGSSLNPYATSYIPIS+R AN+ FIAE+S RE IGANLPG SEQ +           
Sbjct: 16  MKPHGSSLNPYATSYIPISKREANKAFIAESSSRENIGANLPGNSEQKMCG--------- 75

Query: 61  LNMHHGKKAP-VAAASAVRNHPFHGSLSQHSGDLTEMEMFDREVNMDLELLQVSFPGLSE 120
           LN+ +GKKAP  A ASAV+NHPFHGSLS+ + +  EME F  EVNM+LELLQ+ FPGLSE
Sbjct: 76  LNLRNGKKAPDDAVASAVKNHPFHGSLSKDNSEFAEMETFHTEVNMELELLQICFPGLSE 135

Query: 121 QSLTDVYFANKGDLDAAIDMLSQLENKHPSDVEYDPESLPDTLDIGDISESGFVAVDQPS 180
           QSLTDVYFAN  DLDAA+DML+QLENKHPSD EYDPESLPD+LDIGDISESGF A DQ S
Sbjct: 136 QSLTDVYFANNADLDAAMDMLNQLENKHPSDFEYDPESLPDSLDIGDISESGFAAADQLS 195

Query: 181 FRMKNVANDASTSSRF 196
            RMKNVA+ ASTS+RF
Sbjct: 196 SRMKNVASGASTSTRF 202

BLAST of HG10013561 vs. ExPASy TrEMBL
Match: A0A6J1IIU2 (polyadenylate-binding protein-interacting protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111476662 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.2e-66
Identity = 138/196 (70.41%), Postives = 157/196 (80.10%), Query Frame = 0

Query: 1   MKPHGSSLNPYATSYIPISQRGANRTFIAENSPREIIGANLPGYSEQGVYNPPYSNISPR 60
           MKPHGSSLNPYATSYIPIS+R AN+ F+AE+S RE IGANLPG SEQ +           
Sbjct: 16  MKPHGSSLNPYATSYIPISKREANKAFMAESSSRENIGANLPGNSEQKMCG--------- 75

Query: 61  LNMHHGKKAP-VAAASAVRNHPFHGSLSQHSGDLTEMEMFDREVNMDLELLQVSFPGLSE 120
           LN+ +GKKAP  A A AV+NHPFHGSLS+ + + TEME F  EVNM+LELLQ+ FPGLSE
Sbjct: 76  LNLRNGKKAPDDAVAPAVKNHPFHGSLSKDNSEFTEMETFHTEVNMELELLQICFPGLSE 135

Query: 121 QSLTDVYFANKGDLDAAIDMLSQLENKHPSDVEYDPESLPDTLDIGDISESGFVAVDQPS 180
           QSL  VYFAN  DLDAA+DML+QLE+KHPSD EYDPESLPD+LDIGDISESGF A DQ S
Sbjct: 136 QSLAGVYFANNADLDAAMDMLNQLEDKHPSDFEYDPESLPDSLDIGDISESGFAAADQLS 195

Query: 181 FRMKNVANDASTSSRF 196
            RMKNVA+ ASTS+RF
Sbjct: 196 SRMKNVASGASTSTRF 202

BLAST of HG10013561 vs. TAIR 10
Match: AT5G25540.1 (CTC-interacting domain 6 )

HSP 1 Score: 92.4 bits (228), Expect = 4.2e-19
Identity = 70/198 (35.35%), Postives = 104/198 (52.53%), Query Frame = 0

Query: 1   MKPHGSSLNPYATSYIPISQRGANRTF---IAENSPREIIGANLP--GYSEQGVYNPPYS 60
           MK   S+LNPYA +Y+P+S+R  +      + +   ++      P  GY  QG+ +   +
Sbjct: 1   MKSGSSTLNPYAAAYVPLSKREGSLVDTKPVTQQHMQQQHHQQQPYYGYGVQGMGSYQGT 60

Query: 61  NISPRLNMHHGKKAPVAAASAVRNHPFHGSLSQHSGDLTEMEMFDREVNMDLELLQVSFP 120
            +SP       KK+P   +  V NH              +++  D E++MD+E L  ++P
Sbjct: 61  QMSP-------KKSP---SEMVYNH--------------QLKDEDLEMDMDIEYLLATYP 120

Query: 121 GLSEQSLTDVYFANKGDLDAAIDMLSQLENKHPSDVEYDPESLPDTLDIGDISESGFVAV 180
           GLS++S+ DVY AN  DLDA I+ML+QLE       EY    LPDTLDIGD+ E     +
Sbjct: 121 GLSQESINDVYLANTCDLDATIEMLNQLEIYSTEAEEY----LPDTLDIGDVPE-----I 165

Query: 181 DQPSFRMKNVANDASTSS 194
              S + KN  + AS+SS
Sbjct: 181 ITESSKQKNDGSSASSSS 165

BLAST of HG10013561 vs. TAIR 10
Match: AT5G11440.1 (CTC-interacting domain 5 )

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-18
Identity = 73/193 (37.82%), Postives = 105/193 (54.40%), Query Frame = 0

Query: 1   MKPHGSSLNPYATSYIPISQRGANRTFIAENSPREIIGANLPGYSEQGVYNPPYSNISPR 60
           MKP   +LNP+A SY+PIS+R                     G  + G+    ++  SP 
Sbjct: 1   MKPGAFALNPHAASYVPISKRVDY------------------GGGDDGLV---FAAKSPT 60

Query: 61  LNMHHGKKAPVAAASAVRNHPFHGSLSQHSGDLTEMEMFDREVNMDLELLQVSFPGLSEQ 120
           + +   KK+   A   +R+            D  ++EM   +++MD+E L V+F GLS++
Sbjct: 61  VEVSMPKKSSEMAYKQIRD------------DDLDLEM---DIDMDIEYLLVTFSGLSQE 120

Query: 121 SLTDVYFANKGDLDAAIDMLSQLENKHPSDVEYDPESLPDTLDIGDISESGFVAVDQPSF 180
           S+TDVY AN GDL+A I+ML+QLE  + ++ E   E+LP+TLDIGDISESG      PS 
Sbjct: 121 SITDVYLANGGDLEATIEMLNQLE-IYSTESE---ENLPETLDIGDISESG------PS- 146

Query: 181 RMKNVANDASTSS 194
             K+    ASTSS
Sbjct: 181 TSKSTEVAASTSS 146

BLAST of HG10013561 vs. TAIR 10
Match: AT2G26280.1 (CTC-interacting domain 7 )

HSP 1 Score: 48.1 bits (113), Expect = 9.1e-06
Identity = 35/88 (39.77%), Postives = 47/88 (53.41%), Query Frame = 0

Query: 80  HPFHGSLSQHS--GDLTEMEMFDREVNMDLELLQVSFPGLSEQSLTDVYFANKGDLDAAI 139
           +PF G  S+H    D+      D EVN  ++ L   FPG + +SL +VYFAN  DL   I
Sbjct: 194 NPFSGK-SRHGFVNDMITESPGDMEVN-PVDFLASQFPGFAAESLAEVYFANGCDLQLTI 253

Query: 140 DMLSQLE-------NKHPSDVEYDPESL 159
           +ML+QLE       N++ S   Y P SL
Sbjct: 254 EMLTQLELQVDGGLNQNISPKTYAPPSL 279

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038900178.13.4e-9587.20polyadenylate-binding protein-interacting protein 5-like [Benincasa hispida][more]
XP_004136335.12.5e-9089.29polyadenylate-binding protein-interacting protein 5 [Cucumis sativus] >KGN60127.... [more]
KAA0038789.11.2e-8988.27polyadenylate-binding protein-interacting protein 5 [Cucumis melo var. makuwa] >... [more]
XP_008466368.11.2e-8988.27PREDICTED: polyadenylate-binding protein-interacting protein 5 [Cucumis melo][more]
KAG7024479.11.2e-6872.45Polyadenylate-binding protein-interacting protein 5 [Cucurbita argyrosperma subs... [more]
Match NameE-valueIdentityDescription
Q6NQH95.9e-1835.35Polyadenylate-binding protein-interacting protein 6 OS=Arabidopsis thaliana OX=3... [more]
Q9LYE52.3e-1737.82Polyadenylate-binding protein-interacting protein 5 OS=Arabidopsis thaliana OX=3... [more]
O648431.3e-0439.77Polyadenylate-binding protein-interacting protein 7 OS=Arabidopsis thaliana OX=3... [more]
Match NameE-valueIdentityDescription
A0A0A0LHC31.2e-9089.29CUE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G878960 PE=4 SV... [more]
A0A5A7TBQ86.0e-9088.27Polyadenylate-binding protein-interacting protein 5 OS=Cucumis melo var. makuwa ... [more]
A0A1S3CR416.0e-9088.27polyadenylate-binding protein-interacting protein 5 OS=Cucumis melo OX=3656 GN=L... [more]
A0A6J1F6U25.9e-6972.45polyadenylate-binding protein-interacting protein 5-like OS=Cucurbita moschata O... [more]
A0A6J1IIU21.2e-6670.41polyadenylate-binding protein-interacting protein 5-like OS=Cucurbita maxima OX=... [more]
Match NameE-valueIdentityDescription
AT5G25540.14.2e-1935.35CTC-interacting domain 6 [more]
AT5G11440.11.6e-1837.82CTC-interacting domain 5 [more]
AT2G26280.19.1e-0639.77CTC-interacting domain 7 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003892Ubiquitin system component CUEPFAMPF02845CUEcoord: 108..143
e-value: 3.5E-5
score: 23.4
IPR003892Ubiquitin system component CUEPROSITEPS51140CUEcoord: 102..145
score: 12.496307
NoneNo IPR availableGENE3D1.10.8.10coord: 92..149
e-value: 2.0E-6
score: 29.3
NoneNo IPR availablePANTHERPTHR37252:SF3POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 6coord: 1..194
IPR038981Polyadenylate-binding protein-interacting protein 5/6PANTHERPTHR37252POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 6coord: 1..194
IPR041806Polyadenylate-binding protein-interacting protein 5/6/7, CUE domainCDDcd14371CUE_CID7_likecoord: 104..146
e-value: 5.72983E-18
score: 71.9072
IPR009060UBA-like superfamilySUPERFAMILY46934UBA-likecoord: 102..145

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10013561.1HG10013561.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0043130 ubiquitin binding
molecular_function GO:0005515 protein binding