HG10013555 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10013555
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCHY-type/CTCHY-type/RING-type Zinc finger protein
LocationChr02: 2557981 .. 2563543 (-)
RNA-Seq ExpressionHG10013555
SyntenyHG10013555
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGAGATTCAATTTGAGGTAGGCTTGTTCTTTTGGACAATTAAGCCAGTAGAACTATTAAATATTTTGCCTTTTTTTTTTGTTATTTGTGGAACACATTTGATTGGGTATGTGTTGCTTTTACAATAGGTTGATGCATCCAATGTTTGACCCAGTTTAGTGGGAATTGAATCCGGAGTCTTCAACAAATCAAGTGATCATGATGTGCAATTGGTCACTATTCAAAGCTGGAGGCTCTGGAGTCCCCCAGTGCTGCGTTGTAGTTATTATATGGTCTCCTATAACTCTTCTTTTTTGGATGAACTGAACTCTCCTCGTGGAGTTATGATGATTGGAGCTGTACAACATTTCTTGGATAATTTGTTGCTGATGTGCTGTGGTCTGCAGCTGTATAGAAGAAAGCAACAGTGTCATGGCCTGTTTGACGGTGAATAACATGCCTTTTCTGGCTTTAGGATGATTGCTAAAGTCCTTCCTATATGCAGGTGCTTTAAGCTTCTATCCAGATTCAACCATTGTCCTGCATTGGAGGATATTATTTTCCATGGCAGAGGTTGCAACTTACTCCAAGCCTCAACAAATTGGGACAGAGGAAAATCAACATATGACATGCAGAGGAAAGGAGATAAGAACTGTGTACACTGAGCAGTTTGATTCTCAGGCCTTGCCCTTTGAAAAATCAAATGATCCCCAAGAGTTGTTGGAGAGGGAATACATGCAACATGGGTAAAGTCCTTGAGAGTTATCTTTCTAACCCTGTTTCAGGTCTTTCTTATTCATTTGCTAAACACAGAACTTGTCATTTTGCAGATGTGCACATTATAGGCGAAGGTGCCGTATCAGAGCTCCCTGTTGTAATGAAATCTTTGATTGCCGGCATTGCCATAATGAAATAAAGGCAAGGAACTTCATTTTGAGATTGATTATAGAATGTTTGTGGTTCTAAGCTATCATATACTAACTACAAAACCCTTTTTTATTCCCTCGTACAGAATAGTATTTGTGTTGATCCGAAAGAAAGACATGAGATCCCACGTCATGAAGTCAACCAGGTAAGTTTGCCCACTGGTTACTTACCCATCTTGTTTCACCTATTCAGAAATTTCTCAGAGTTGAAGTATCTCTTCAAATTTACCTATAATTTTGTTTTCTCAGGTTATATGCTCACTATGTGGAACTGAACAGGAGGTGTGTGCTTATTCTTACTATTTCAATTTTGTATAAAAACGATTAGTAATTTCATGCTCATGAACTCTAGATTCACAGTTTTGTTGGTTTCTGATTTGGCAGGTTCGCCAAGAATGTATCAACTGTGGTGTCTGTTTTGGGAAATATTTCTGCGAGACTTGCAAGCTGTTTGATGATGATGTGAGTTCAAGGCATCCACTTAGTTTTCCATTTTTGTCACCAATTCACCTCTCATTTTTTATGCACTAACAATTTAGTCAATTTAGTCACTTGTGGTATTGGTTTCCTTTCTTGCAGACATCTAAGAAGCAGTATCACTGTAATGGCTGTGGAATTTGTAGGTATGATATATCCTAATCCATTTATCTTATTCAAAGATTATTGCTCTGTTTCCCTATGTTTACATCAAAACTAAAATCTTGGTTGTATTGTATATGTTTTCGTTGGAGTTTATCTCTGTTCCCACACTTATTTGATGCCATTATGAACGTTTTGACAGAATTGGGGGGCGCGAGAACTTTTTCCACTGCCATAAGTGTGGTAAGTCACACGTAACTGTCTGATTCATCTGCTAATGTTAGCCTCACTTGTCATACAGTGTGATCAAAATTGTATCAATTGTGTGTGCTGAATTTTAAATTTTCATGTCATGAAGGTTGCTGCTATTCAGTTCTTTTAAAAAATAGCCATCCCTGCGTTGAAGGAGCAATGCACCATGACTGTCCTGTTTGCTTTGAGGTAAAGCTTTCTCCTCATTTCGCTTATTCATTTGCTATCCATTCTTAACCAGCACCAAATAATGATGCCATCTTTAACAAATGACTTGCAGTACCTTTTTGATTCAACAAATGATGTTACGGTAATGCCATGTGGACACACCATCCATCAAAATTGCTTGAAGGAGATGAGAGATCACTTTCAGTACGTGTTCATACAGAGTTCTTGTTTACTTATGGAACTTAATTTCCTGTGAAATGAATACACAAACTTTGTTTTCTAATCACATCGATTCTGCCACAGATATGCTTGCCCTCTCTGCTCCAAGTCCGTTTGTGATATGTCCAAAGTGTGGGAAAAATTTGACATGGAAATCGCTGCTACGCCCATTCCAGAGCCATACCAAAATAAAATGGTAAAGCTCCCAGCCCACTTTTACTTTCCTTTTCACTTTCATTTCATTGCTAGTTAATCATATATTGTAGTGTATCTGCTGGAGTTGTTTCTTTGTGGTTCAATGAAAAATACTTTTGTGCATCTCGAGCTATACTTATCTTTATAGATTTCATTAAATTGTCCAATTATAATTTACGACGTGGCAAATTTACTCATATAATATCACAGTAGAAACTAGGAAGCCCTTGTGTTCAAATATCTATTGCTATGGAGTTTCTAGACCAAAATAATCTTCGAAGCATGCATGTGGGTGAAGGTTAAGAGTATATGAATATATCATAACCTATCAGTTCCTCCAAGGCTAAAAACTTCATACTTTGAACGAACAGGTCTGGATTCTTTGCAACGATTGCGGTAAGACGTCGAAGGTGCAGTATCATGTGGTGGCTCAAAAGTGCTTAAATTGCAAGTCCTACAACACCAAACAGACCAGAGGCTAAGGATGTGAATATGAAGGCCACATTCTATCATCCTGCAGCTCTGAAATGCCTCCATCTCCAGCTACTTGAACTCCCATTTCCATGCTGTGACTCCTTCAGAGCCTTCAAGCCACACTCGTCATTCTCGAGCGATGGGGAAGACGATGTAATTATGCGGCCTCCTTTGCTTCGGGAAGTCGACGACATCGCACATTTTTTCTTTTCTTTATTCGGTTGATATCTTGTATCTACCTCTTCATTCTCCCATCATTCTATTTGTTGGTGTCTGTATTGTTGTATGTATTTGTGTATTTGTCCCCTCACTCAGAAGAAAATATTGCATTGTAATTATGGTCAGTTAATTGCATTGCATATGATTTGGTTTTTCAGAATTCATCGCCATTTCCTTGATGCCTTCTAACTGACCTCTCACAAACCAAAACGATGACGAATTGAGCTTGAACTTCACTTGTACCTTCTAGAAGTTTGAAGCGTAGTTCTCAGTTCAATCCTTCGTGTATGGATTGTTACAATGAGCAAACACAAGCAATTCACAAGTTTTAATAACTTTTGATAAAAAAAAAAAAAAAAAAAAAAAAAATAACAACTTTTGGAATTTATTTTATGAAGTTTCAAATTTTCGGTTGAATATTAAAATAAAGGGAAATTGTACAAACAACCTATGAACTATGAGCTCATAATTACAAACAACCTATGAACTAGAGGCTCATAATTAACTTTTAATTTCTTTTAGGCATACTAACTTCCTCATCAAGAATGATGGAGATAATACTATCTAGAAAAAAATTCTTTTAGATTATAGAAAAACCTTGAGAGGTTGTTAAAGTCGTAAAAGCGTGTATAGCTTTGTTCGACTTTTGGAGAACATGACAAAAACACAAGGTATTACAGAATTAGTAACAAAAACAATATCCTTAACAAAAATTAGAATATTAGACAATGAGGAATTCACAACCTCCAATGAGTCAGACTCAACTTTTAACATAGGGTTAGACCCTCTCCATTCTTGATTGATTGCTTCCAGGCCCTCCAAGATGTTTTCAGCTTCCAATAGATTAATACCACCCATCCTCTTGGTAAATTTGCAACCACTCAACAGCACACGTCTTTCATGATTGTGGACAATCCAATCAAGCTCTCCTCTTCCCTCTAGGTAAGACCATGCTACTTCCGCATTGGGAAGGGCAAGGAAAAGCAGGGAAGCCAATGCGCCAAAAGACCTGTCCTACTCAACCAAATGCTTCTCAATCAACCTATGAAGGGAATCGACATCAGGGACCTCATTCAAGAAGCATATCTCTTTACAAAAACTCCACAAATACCACATGATGATCAGCAAGTGGTCGATCTCCTCCCTAAAACTCAAATTTCTCCAACCTCTGCCAACACCAAACAACCCAACGTAAGAAGGCATAAACAAACTTCAAGGTAACCTCGGGTTCCATACGTGGGATAAGGATTAGGGTTCAAACTTCATCTTCTCTATTTGATATTCTCTCTCCATCGTCAGAGGATTTTTTCCTCTTCGCTCTCTTTTTCTTCTTCCCGGCATTACGAGTTGCAGGCGGCTGGCGAAGGGTGAGGAATCGACGGCACGAGTTGCATGCATTTAACGATGGGGCAGAAATTGACGATTTAAAATAACCTCATCTATATATTTAAAATACGATTGTATATATAACATAGTATGTGGAGTATATTACTCAATAAAAACAAGACTAATTAATTCTTCAATTTGATGAAGAAGATGAATATATGTGACAAAGTATGTGGAATAAATACATTTAAAATAACCTCATAGTTCTGCAATTGGATGAAGAATCAATACCTCTACAATTAAGGCCAACTAAATCTCGTCAATTAAAGAAAATAAAATCACACTAATCGCATATTAAATGCATTAAAATGGAAATGAATACTTATAAACAACAAAAAGTCAGAAAGTACGACTCATTAATGAAAGAAAAAAAGACGGCTCATTAATTACAAAAGAAAATTGGAAAGAAAGGTAAAATTATCTAAAATTATCTCTAAAAGCCTTCAATAAAAAATTTCAAATTTAAGGACATTTATAAAATATATGAACTATTTTTTTTTGGGTAATTGTAATGAGTAGCAATTTTAGGGATAACAAGTGTATAGCAACATTTTTAAAAATTGCAAATATAGCAAAGTCTATTAACGATAGACTTCTACAACTGATAGACTCTTGCTATATTTACAATTTTTTTTTTAAAATATTGATGTATATGTTAATACTTTGAATCTAATTGTTATATTGCAACCGTCACTAAATTATAATACAAAATATATGGAAAAAAAATCAATTTTAGACTCTAAACTTGGATAAGTCAATTCAATTTTCACTAACTCCCCCACCAATTTTTTTTAACAATAATACCAGAAAAAAAAAGACAATGTAACTTTTTTTTTCCAAAACTCGTTAATTTTAATAAAATGAAATTGTGCATAAAAGATAAACTTTGACTAATGAATCATCCATCGTGAGAGATTTAAATCTCTATATCACGTATTGATGAACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGTGACACCTCAAAATTTGTTTCAACAAAAATGTTGATTGACTATTTAAGAAACTAATATATTTTTAAAAGGTGGACTATTCTTTTCAATGTAAAATTACAACTCAAAATATTAAACTTACAGATTGTGACTGCTCAGAGTTCACTCCACCCTGCATAA

mRNA sequence

ATGCGGAGATTCAATTTGAGTTTAGTGGGAATTGAATCCGGAGTCTTCAACAAATCAAGTGATCATGATGTGCAATTGGTCACTATTCAAAGCTGGAGGCTCTGGAGTCCCCCAGTGCTGCGTTGTAGTTATTATATGGTCTCCTATAACTCTTCTTTTTTGGATGAACTGAACTCTCCTCGTGGAGTTATGATGATTGGAGCTGTACAACATTTCTTGGATAATTTGTTGCTGATGTGCTGTGGTCTGCAGCTGTATAGAAGAAAGCAACAGTGTCATGGCCTGTTTGACGGTGCTTTAAGCTTCTATCCAGATTCAACCATTGTCCTGCATTGGAGGATATTATTTTCCATGGCAGAGGTTGCAACTTACTCCAAGCCTCAACAAATTGGGACAGAGGAAAATCAACATATGACATGCAGAGGAAAGGAGATAAGAACTGTGTACACTGAGCAGTTTGATTCTCAGGCCTTGCCCTTTGAAAAATCAAATGATCCCCAAGAGTTGTTGGAGAGGGAATACATGCAACATGGGTTATATGCTCACTATGTGGAACTGAACAGGAGATATGCTTGCCCTCTCTGCTCCAAGTCCGTTTGTGATATGTCCAAAGTGTGGGAAAAATTTGACATGGAAATCGCTGCTACGCCCATTCCAGAGCCATACCAAAATAAAATGGTAAGACCATGCTACTTCCGCATTGGGAAGGGCAAGGAAAAGCAGGGAAGCCAATGCGCCAAAAGACCTGTCCTACTCAACCAAATGCTTCTCAATCAACCTATGAAGGGAATCGACATCAGGGACCTCATTCAAGAAGCATATCTCTTTACAAAAACTCCACAAATACCACATGATGATCAGCAAGTGGTCGATCTCCTCCCTAAAACTCAAATTTCTCCAACCTCTGCCAACACCAAACAACCCAACATTGTGACTGCTCAGAGTTCACTCCACCCTGCATAA

Coding sequence (CDS)

ATGCGGAGATTCAATTTGAGTTTAGTGGGAATTGAATCCGGAGTCTTCAACAAATCAAGTGATCATGATGTGCAATTGGTCACTATTCAAAGCTGGAGGCTCTGGAGTCCCCCAGTGCTGCGTTGTAGTTATTATATGGTCTCCTATAACTCTTCTTTTTTGGATGAACTGAACTCTCCTCGTGGAGTTATGATGATTGGAGCTGTACAACATTTCTTGGATAATTTGTTGCTGATGTGCTGTGGTCTGCAGCTGTATAGAAGAAAGCAACAGTGTCATGGCCTGTTTGACGGTGCTTTAAGCTTCTATCCAGATTCAACCATTGTCCTGCATTGGAGGATATTATTTTCCATGGCAGAGGTTGCAACTTACTCCAAGCCTCAACAAATTGGGACAGAGGAAAATCAACATATGACATGCAGAGGAAAGGAGATAAGAACTGTGTACACTGAGCAGTTTGATTCTCAGGCCTTGCCCTTTGAAAAATCAAATGATCCCCAAGAGTTGTTGGAGAGGGAATACATGCAACATGGGTTATATGCTCACTATGTGGAACTGAACAGGAGATATGCTTGCCCTCTCTGCTCCAAGTCCGTTTGTGATATGTCCAAAGTGTGGGAAAAATTTGACATGGAAATCGCTGCTACGCCCATTCCAGAGCCATACCAAAATAAAATGGTAAGACCATGCTACTTCCGCATTGGGAAGGGCAAGGAAAAGCAGGGAAGCCAATGCGCCAAAAGACCTGTCCTACTCAACCAAATGCTTCTCAATCAACCTATGAAGGGAATCGACATCAGGGACCTCATTCAAGAAGCATATCTCTTTACAAAAACTCCACAAATACCACATGATGATCAGCAAGTGGTCGATCTCCTCCCTAAAACTCAAATTTCTCCAACCTCTGCCAACACCAAACAACCCAACATTGTGACTGCTCAGAGTTCACTCCACCCTGCATAA

Protein sequence

MRRFNLSLVGIESGVFNKSSDHDVQLVTIQSWRLWSPPVLRCSYYMVSYNSSFLDELNSPRGVMMIGAVQHFLDNLLLMCCGLQLYRRKQQCHGLFDGALSFYPDSTIVLHWRILFSMAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQHGLYAHYVELNRRYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMVRPCYFRIGKGKEKQGSQCAKRPVLLNQMLLNQPMKGIDIRDLIQEAYLFTKTPQIPHDDQQVVDLLPKTQISPTSANTKQPNIVTAQSSLHPA
Homology
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BLAST of HG10013555 vs. NCBI nr
Match: KAG7024485.1 (putative E3 ubiquitin-protein ligase RZFP34, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203.0 bits (515), Expect = 3.9e-48
Identity = 145/379 (38.26%), Postives = 160/379 (42.22%), Query Frame = 0 

Query: 25  QLVTIQSWRLWS------PPVLRCSYYMVSYNSSFLDELNSPRGVMMIGAVQHFLDNLLL 84
           Q++ I +W L+       P         VSYNSSFLDELNSP GVMMIGAVQ  +D LLL
Sbjct: 124 QVIMICNWSLFKAGGSGVPQCCVVVIIWVSYNSSFLDELNSPLGVMMIGAVQRSMDYLLL 183

Query: 85  MCCGLQLYRRKQQCHGLFDGALSFYPDSTIVLHWRILFSMAEVATYSKPQQIGTEENQHM 144
           MCCGLQLYRRKQQCHGLFD +    P S I  ++    SMAEVATYS+PQQIGTE NQ M
Sbjct: 184 MCCGLQLYRRKQQCHGLFDASTQIQPLSCIGGYY---ISMAEVATYSEPQQIGTEGNQQM 243

Query: 145 TCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQHGLYAHY--------------- 204
           TCRGKE R   TEQFDSQALPFEKSNDP EL+E  YMQ+G  AHY               
Sbjct: 244 TCRGKETR---TEQFDSQALPFEKSNDPHELMEMGYMQYGC-AHYRRRCRIRAPCCNEIF 303

Query: 205 --------------------------------VELNR----------------------- 228
                                            E+N+                       
Sbjct: 304 DCRHCHNEIKARNYILSNSISVDQKERHEIPRHEVNQVICSLCGTEQEVRQECINCGVCF 363

[Close]
BLAST of HG10013555 vs. NCBI nr
Match: XP_038898695.1 (probable E3 ubiquitin-protein ligase RZFP34 [Benincasa hispida] >XP_038898696.1 probable E3 ubiquitin-protein ligase RZFP34 [Benincasa hispida] >XP_038898697.1 probable E3 ubiquitin-protein ligase RZFP34 [Benincasa hispida])

HSP 1 Score: 142.9 bits (359), Expect = 4.8e-30
Identity = 101/273 (37.00%), Postives = 107/273 (39.19%), Query Frame = 0 

Query: 118 MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQH 177
           MAEVATYSKPQQIGTEENQHMTCRGKE+RTVYTEQFDSQALPFEKSN+PQELLEREYM+H
Sbjct: 1   MAEVATYSKPQQIGTEENQHMTCRGKEMRTVYTEQFDSQALPFEKSNEPQELLEREYMEH 60

Query: 178 GLYAHY----------------------------------------VELNR--------- 228
           G  AHY                                         E+N+         
Sbjct: 61  GC-AHYRRRCRIRAPCCNEIFDCRHCHNEIKNSICVDQKERHEMPRHEVNQVICSLCGTE 120

[Close]
BLAST of HG10013555 vs. NCBI nr
Match: XP_008466355.1 (PREDICTED: E3 ubiquitin-protein ligase MIEL1 isoform X2 [Cucumis melo])

HSP 1 Score: 138.3 bits (347), Expect = 1.2e-28
Identity = 100/273 (36.63%), Postives = 104/273 (38.10%), Query Frame = 0 

Query: 118 MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQH 177
           MAEVATYSKPQ IGTEENQHMTCRGKEIRTVYTEQFDS ALPFEKSNDPQE+LEREYMQH
Sbjct: 1   MAEVATYSKPQPIGTEENQHMTCRGKEIRTVYTEQFDSLALPFEKSNDPQEVLEREYMQH 60

Query: 178 GLYAHY----------------------------------------VELNR--------- 228
           G  AHY                                         E+N+         
Sbjct: 61  GC-AHYRRRCRIRAPCCNEIFDCRHCHNEIKNSICVDQKERHEIPRHEVNQVICSLCGTE 120

[Close]
BLAST of HG10013555 vs. NCBI nr
Match: XP_004136332.1 (probable E3 ubiquitin-protein ligase RZFP34 [Cucumis sativus] >XP_031738775.1 probable E3 ubiquitin-protein ligase RZFP34 [Cucumis sativus] >KGN60137.1 hypothetical protein Csa_001208 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 2.6e-28
Identity = 99/273 (36.26%), Postives = 104/273 (38.10%), Query Frame = 0 

Query: 118 MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQH 177
           MAEVATYSKPQ IGTEENQHMTCRGKEIRTVYTEQFDS ALPFEKSNDPQ++LEREYMQH
Sbjct: 1   MAEVATYSKPQPIGTEENQHMTCRGKEIRTVYTEQFDSPALPFEKSNDPQKVLEREYMQH 60

Query: 178 GLYAHY----------------------------------------VELNR--------- 228
           G  AHY                                         E+N+         
Sbjct: 61  GC-AHYRRRCRIRAPCCNEIFDCRHCHNEIKNSICVDQKERHEIPRHEVNQVICSLCGTE 120

[Close]
BLAST of HG10013555 vs. NCBI nr
Match: XP_008466354.1 (PREDICTED: E3 ubiquitin-protein ligase MIEL1 isoform X1 [Cucumis melo])

HSP 1 Score: 135.2 bits (339), Expect = 1.0e-27
Identity = 100/281 (35.59%), Postives = 104/281 (37.01%), Query Frame = 0 

Query: 118 MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQH 177
           MAEVATYSKPQ IGTEENQHMTCRGKEIRTVYTEQFDS ALPFEKSNDPQE+LEREYMQH
Sbjct: 1   MAEVATYSKPQPIGTEENQHMTCRGKEIRTVYTEQFDSLALPFEKSNDPQEVLEREYMQH 60

Query: 178 GLYAHY----------------------------------------VELNR--------- 228
           G  AHY                                         E+N+         
Sbjct: 61  GC-AHYRRRCRIRAPCCNEIFDCRHCHNEIKNSICVDQKERHEIPRHEVNQVICSLCGTE 120

[Close]
BLAST of HG10013555 vs. ExPASy Swiss-Prot
Match: Q9FFB6 (E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.0e-10
Identity = 26/42 (61.90%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 186 LNRRYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV 228
           L+ RY CP+CSKS+CDMS +W+K D E+AA P+P+ Y+NKMV
Sbjct: 196 LHNRYTCPVCSKSICDMSNLWKKLDEEVAAYPMPKMYENKMV 237

[Close]
BLAST of HG10013555 vs. ExPASy Swiss-Prot
Match: Q5JL96 (Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.5e-07
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 0 

Query: 160 FEKSNDPQELLEREYMQHGLYAHYVELNRRYACPLCSKSVCDMSKVWEKFDMEIAATPIP 219
           FE +ND   +L   +  H      +E + ++ACPLCSKSVCDMSK WE+ D E+A   I 
Sbjct: 205 FESTND-VSVLPCGHTIHVKCLREMEEHCQFACPLCSKSVCDMSKAWERLDEELAT--IS 264

Query: 220 EPYQNKMVR 229
           +   NKMVR
Sbjct: 265 DTCDNKMVR 270

[Close]
BLAST of HG10013555 vs. ExPASy Swiss-Prot
Match: Q8VZK0 (E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.0e-06
Identity = 20/39 (51.28%), Postives = 29/39 (74.36%), Query Frame = 0 

Query: 189 RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV 228
           ++ CP+CS+SV DMSK W++ D EI AT +P  Y++K V
Sbjct: 189 KFCCPICSRSVIDMSKTWQRLDEEIEATAMPSDYRDKKV 227

[Close]
BLAST of HG10013555 vs. ExPASy TrEMBL
Match: A0A1S3CSD5 (E3 ubiquitin-protein ligase MIEL1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503789 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 5.7e-29
Identity = 100/273 (36.63%), Postives = 104/273 (38.10%), Query Frame = 0 

Query: 118 MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQH 177
           MAEVATYSKPQ IGTEENQHMTCRGKEIRTVYTEQFDS ALPFEKSNDPQE+LEREYMQH
Sbjct: 1   MAEVATYSKPQPIGTEENQHMTCRGKEIRTVYTEQFDSLALPFEKSNDPQEVLEREYMQH 60

Query: 178 GLYAHY----------------------------------------VELNR--------- 228
           G  AHY                                         E+N+         
Sbjct: 61  GC-AHYRRRCRIRAPCCNEIFDCRHCHNEIKNSICVDQKERHEIPRHEVNQVICSLCGTE 120

[Close]
BLAST of HG10013555 vs. ExPASy TrEMBL
Match: A0A0A0LHD3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G880030 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.3e-28
Identity = 99/273 (36.26%), Postives = 104/273 (38.10%), Query Frame = 0 

Query: 118 MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQH 177
           MAEVATYSKPQ IGTEENQHMTCRGKEIRTVYTEQFDS ALPFEKSNDPQ++LEREYMQH
Sbjct: 1   MAEVATYSKPQPIGTEENQHMTCRGKEIRTVYTEQFDSPALPFEKSNDPQKVLEREYMQH 60

Query: 178 GLYAHY----------------------------------------VELNR--------- 228
           G  AHY                                         E+N+         
Sbjct: 61  GC-AHYRRRCRIRAPCCNEIFDCRHCHNEIKNSICVDQKERHEIPRHEVNQVICSLCGTE 120

[Close]
BLAST of HG10013555 vs. ExPASy TrEMBL
Match: A0A1S3CR85 (E3 ubiquitin-protein ligase MIEL1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503789 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 4.8e-28
Identity = 100/281 (35.59%), Postives = 104/281 (37.01%), Query Frame = 0 

Query: 118 MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQH 177
           MAEVATYSKPQ IGTEENQHMTCRGKEIRTVYTEQFDS ALPFEKSNDPQE+LEREYMQH
Sbjct: 1   MAEVATYSKPQPIGTEENQHMTCRGKEIRTVYTEQFDSLALPFEKSNDPQEVLEREYMQH 60

Query: 178 GLYAHY----------------------------------------VELNR--------- 228
           G  AHY                                         E+N+         
Sbjct: 61  GC-AHYRRRCRIRAPCCNEIFDCRHCHNEIKNSICVDQKERHEIPRHEVNQVICSLCGTE 120

[Close]
BLAST of HG10013555 vs. ExPASy TrEMBL
Match: A0A6J1BQ41 (probable E3 ubiquitin-protein ligase RZFP34 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111004617 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.0e-25
Identity = 93/273 (34.07%), Postives = 99/273 (36.26%), Query Frame = 0 

Query: 118 MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQH 177
           MAEVATYSKPQQIGTEENQHMTCRGKEIRT+YTEQ DSQ L FEKSNDP+ELLE  +MQ+
Sbjct: 1   MAEVATYSKPQQIGTEENQHMTCRGKEIRTMYTEQLDSQYLTFEKSNDPKELLEMGHMQY 60

Query: 178 GLYAHYVELNR------------------------------------------------- 228
           G  AHY    R                                                 
Sbjct: 61  GC-AHYRRRCRIRAPCCNEIFDCRHCHNEIKNSICVDQKERHEIPRHDVNQVICSLCGTE 120

[Close]
BLAST of HG10013555 vs. ExPASy TrEMBL
Match: A0A6J1BTA4 (probable E3 ubiquitin-protein ligase RZFP34 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111004617 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.0e-25
Identity = 93/273 (34.07%), Postives = 99/273 (36.26%), Query Frame = 0 

Query: 118 MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQH 177
           MAEVATYSKPQQIGTEENQHMTCRGKEIRT+YTEQ DSQ L FEKSNDP+ELLE  +MQ+
Sbjct: 1   MAEVATYSKPQQIGTEENQHMTCRGKEIRTMYTEQLDSQYLTFEKSNDPKELLEMGHMQY 60

Query: 178 GLYAHYVELNR------------------------------------------------- 228
           G  AHY    R                                                 
Sbjct: 61  GC-AHYRRRCRIRAPCCNEIFDCRHCHNEIKNSICVDQKERHEIPRHDVNQVICSLCGTE 120

[Close]
BLAST of HG10013555 vs. TAIR 10
Match: AT5G25560.1 (CHY-type/CTCHY-type/RING-type Zinc finger protein )

HSP 1 Score: 87.4 bits (215), Expect = 2.2e-17
Identity = 40/53 (75.47%), Postives = 44/53 (83.02%), Query Frame = 0 

Query: 189 RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMVRPCYFRIGKGKEKQ 242
           +YACPLCSKSVCDMSKVWEKFDMEIAATP+PEPYQN+MV+      GK  E Q
Sbjct: 235 QYACPLCSKSVCDMSKVWEKFDMEIAATPMPEPYQNRMVQILCNDCGKKAEVQ 287

[Close]
BLAST of HG10013555 vs. TAIR 10
Match: AT5G25560.3 (CHY-type/CTCHY-type/RING-type Zinc finger protein )

HSP 1 Score: 87.4 bits (215), Expect = 2.2e-17
Identity = 40/53 (75.47%), Postives = 44/53 (83.02%), Query Frame = 0 

Query: 189 RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMVRPCYFRIGKGKEKQ 242
           +YACPLCSKSVCDMSKVWEKFDMEIAATP+PEPYQN+MV+      GK  E Q
Sbjct: 245 QYACPLCSKSVCDMSKVWEKFDMEIAATPMPEPYQNRMVQILCNDCGKKAEVQ 297

[Close]
BLAST of HG10013555 vs. TAIR 10
Match: AT5G25560.4 (CHY-type/CTCHY-type/RING-type Zinc finger protein )

HSP 1 Score: 87.4 bits (215), Expect = 2.2e-17
Identity = 40/53 (75.47%), Postives = 44/53 (83.02%), Query Frame = 0 

Query: 189 RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMVRPCYFRIGKGKEKQ 242
           +YACPLCSKSVCDMSKVWEKFDMEIAATP+PEPYQN+MV+      GK  E Q
Sbjct: 230 QYACPLCSKSVCDMSKVWEKFDMEIAATPMPEPYQNRMVQILCNDCGKKAEVQ 282

[Close]
BLAST of HG10013555 vs. TAIR 10
Match: AT5G25560.2 (CHY-type/CTCHY-type/RING-type Zinc finger protein )

HSP 1 Score: 85.5 bits (210), Expect = 8.5e-17
Identity = 36/39 (92.31%), Postives = 39/39 (100.00%), Query Frame = 0 

Query: 189 RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV 228
           +YACPLCSKSVCDMSKVWEKFDMEIAATP+PEPYQN+MV
Sbjct: 235 QYACPLCSKSVCDMSKVWEKFDMEIAATPMPEPYQNRMV 273

[Close]
BLAST of HG10013555 vs. TAIR 10
Match: AT5G22920.1 (CHY-type/CTCHY-type/RING-type Zinc finger protein )

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-11
Identity = 26/42 (61.90%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 186 LNRRYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV 228
           L+ RY CP+CSKS+CDMS +W+K D E+AA P+P+ Y+NKMV
Sbjct: 196 LHNRYTCPVCSKSICDMSNLWKKLDEEVAAYPMPKMYENKMV 237

The following BLAST results are available for this feature:
BLAST of HG10013555 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024485.13.9e-4838.26putative E3 ubiquitin-protein ligase RZFP34, partial [Cucurbita argyrosperma sub... [more]
XP_038898695.14.8e-3037.00probable E3 ubiquitin-protein ligase RZFP34 [Benincasa hispida] >XP_038898696.1 ... [more]
XP_008466355.11.2e-2836.63PREDICTED: E3 ubiquitin-protein ligase MIEL1 isoform X2 [Cucumis melo][more]
XP_004136332.12.6e-2836.26probable E3 ubiquitin-protein ligase RZFP34 [Cucumis sativus] >XP_031738775.1 pr... [more]
XP_008466354.11.0e-2735.59PREDICTED: E3 ubiquitin-protein ligase MIEL1 isoform X1 [Cucumis melo][more]
BLAST of HG10013555 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FFB62.0e-1061.90E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=... [more]
Q5JL964.5e-0746.38Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=3... [more]
Q8VZK05.0e-0651.28E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 ... [more]
BLAST of HG10013555 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CSD55.7e-2936.63E3 ubiquitin-protein ligase MIEL1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10350... [more]
A0A0A0LHD31.3e-2836.26Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G880030 PE=4 SV=1[more]
A0A1S3CR854.8e-2835.59E3 ubiquitin-protein ligase MIEL1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10350... [more]
A0A6J1BQ415.0e-2534.07probable E3 ubiquitin-protein ligase RZFP34 isoform X1 OS=Momordica charantia OX... [more]
A0A6J1BTA45.0e-2534.07probable E3 ubiquitin-protein ligase RZFP34 isoform X2 OS=Momordica charantia OX... [more]
BLAST of HG10013555 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G25560.12.2e-1775.47CHY-type/CTCHY-type/RING-type Zinc finger protein [more]
AT5G25560.32.2e-1775.47CHY-type/CTCHY-type/RING-type Zinc finger protein [more]
AT5G25560.42.2e-1775.47CHY-type/CTCHY-type/RING-type Zinc finger protein [more]
AT5G25560.28.5e-1792.31CHY-type/CTCHY-type/RING-type Zinc finger protein [more]
AT5G22920.11.4e-1161.90CHY-type/CTCHY-type/RING-type Zinc finger protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 299..320
NoneNo IPR availablePANTHERPTHR21319RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1coord: 189..229
NoneNo IPR availablePANTHERPTHR21319:SF53CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEINcoord: 189..229

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10013555.1HG10013555.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding