HG10013479 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10013479
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RNA-binding protein 38
Location	Chr02: 1882011 .. 1885449 (-)
RNA-Seq Expression	HG10013479
Synteny	HG10013479

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTACCCACATTACCGATCCCAATTTGGAGATACAACTTTCACTAAAGTTTTTGTTGGTGGCCTTGCCTGGGAAACTCCCACTCACCAAATGAGATCTTATTTTGAACAATTTGGTGACATTCTTGAAGCTGTGATTATCACTGATAAAAACACCTCCAAATCTAAAGGCTATGGATTTGTAACTTCCCCACTCTTTTTCTCTCTCTTTCCTATTTCACCGCTTTTGAGTTCGGTAGTGATTTAAGTAAGTAAGTTACAGGTGACATTTCGCGATGCTGAATCTGCGAGAAGAGCTTGTGCAAATCCAAACCCGATAATCGATGGAAGACGTGCAAATTGTAACATTGCGGCATTGGGTCGACCTCGGCCTTCGCCTCCACGAGGTCGGTTATTTAGTTTATATATCTCTATCGTTTTTTCTATGATTGTTAGTTTATTTGTATTTTTTTTAAAAAAATTAATTGGGATTTAGGACGAGGTCAGAGTAGTGTAAATCCATATCAAGGAAGTGCAATGCAAGCACAGGCAGTACCATCATATGGTGGAGTCCCGTCGCCGTTAAACCAGCCACCACTTCCTCCGCCACCTCCGCCGCCTCCCCCCGTCATGTATTCACCATACGGGTGAGTTGAGTTTATTTATTTTAATTAATTAAAATTGAAAATAGGGGATTAAACTAAAAGCAAATACAAAATTAAATATGGGATTAATAATTCCATAAAAAAGAAGATTATGTGGGCGTAGGAATTGGGTATGATAAAAACACATGGACCCACGTGGGTCTTCATGCAACCCTTTCCTTATCTTAATAATTATAACTGCATATATCATCCATTTCTTACACCTCTTTGTAACTTTTTAAAGCAAAAAGATAAAATTTTCCATCACTCAAAATTAACTATGCTTAAAAACTTTATATTTTGAGCTGAAATATTATGGGAAAATTAAATTTTTAGTGAGGAAGGTGGTACAAAGTATTACCCTAGTATGAAAAAATTTCTATTTTATTTGTTGTGTGTCGTAGTAGAAATATTTTAAAATTAGTATGGAGTCTATGAACTAAAATGATATATAATTTAACTACTATATATTAAATGAGGTGAGACTTTGTTTATGTAAAGGGTAGATAGGTTATTGGCTATATTGGGCATTATCCTGAAATTGGTGATAATGAGTCAAAAAAACTATAATCACTGTCATTTCAGTGTCAAATATTTTTACCTGAACTACTGACAGTGTGTAGAAAGAAAACAAACAGCTCCTCCCCACCCACCAATCAACAATCAACAAACCCAAAACTCAGTCCCATTTGGTAAATTCTTGATAAAAAAAAAAAAAAAAAACCAAGAAGAATTAATTATGAACCAACTTGTTTGTATTTTAATTTTTTGTTTGGTTTTGGTTTTGCAGATACCCAGCTTACAGTCCTGATTATGGGTACCATCATCACCAAGTTAGCCTCCTTTTTTACTTTTTAAAATTACAGAATTTATTGAAAATTTTGATTGGGGCATTTCATCAAACAGTTGGTGGGCATAAACCATAACTTATAAAAAAAGGATTGAATTTGAACAGGCAGTATACAACCCACAAATTCAACAGCCACAAATGTATCAACAATCCCCATATTATTATGGGTATTCAGTACAATCGCCAAGAGGAACATTTCCCAGTCCTTCACAATCGCATCATCCTCGGCTAGTACTTTACTATCCTCCTTCACCTACAGCTACAACTCCTCAATTTGAAGCTTCCTTCAATTATCCTCCTCCTTTGATACCACACCGTTTTTCCTCTACAGGTAAATTTACATATTACAATTTCTTCAATTTATACATCTGACAAAACAACAGATAAACAGATTTAGATTATTATTATTATTAAAGCAAAAAAAGAAAAAAGAAAAAAGAAAAAAGAAAAAAAAAAGGTGGGGGCCATGTGGGGAAAGGGGGTAAAGGCATGTGAGTGAGCTGTCTGGGCCAATGAAATGGTTGAAAGGAAATTGATGACAGAGTAGCATTTCCATTATATAGACAGCTACTGCACTCTCACCTGCATTTCCATGTGTGCTTCAGTTTCCCAACTTATTACACTATATCTATATCTATATATATTTATATATTTCTCAAACTAAACCCTTTTTAAATTCTTTCTCTTCTCTTTTTTTACCCTTTTTTTTTTTATTTTTTTATTTTTTTTTTATTTTTCAACTCTCCCTCCCTTTTCTTATAATGTGGATCACTTTGTATTAAAAGGCAGCCACATTGTGTTGATTGCATTTCAAATACATCTTCTACTCCTAATTAACACACCCCACCTGAAAATATCTCTATTAGCTTAATGCTAGAATTCACTCATGCTAACCTTATAGATTAACATCATTTTTAGTCACATTGTGTTTACTCTATAAGGTTTGGAGGCTATTTGAGGTGTTGGGTTAGTTATTATAGTTGGTGTAGTTATTGTAATATGTAGATTATAATAGTTTGTATTTAGGGTGCAAACTATTTGGATTAAAAATGTCTGATGGTAACCTTATATAACATCATTCTTAGTTAGACGTGCTTACTCTAAGAAGCCCAATAGTTGTTTAGGGTGATGAGTTAGTTATTATAGTTGGTGATTACTATAGCTCGTGGGTTATTATAGTTTAGGGTTTAGGGTGTAAACTATTTTAGATTACAAATGAGGAGAACATTTTCACTATGAAGGTTTTCAAATAGTTTCATCGTGCTTAAGTGTGGATTATAATAATGAGGCAATTGCAAAGATAGCGATTAGGCTCAAAGTATTAGTAGATATAGCATAATGCAAAAAAAATTGTAAATGTGGCAGAATTTAGATCCAGCTATTTGGAGTTTATCGTTGATAGATTATATCGCTAATAGGAGTCTATCAATGATAAAATTTATCACTAATAGATTTTGCTATATTTACAAATTTTTAAAATAGTTGTTATACACTTAATTATTAACCCTAAAAGTGCTACCTATTGCAATTACTTTATGATAATTGGAACTTCAACTACTATACCAAAGTATAATTTTATATTAGTAGCCTAACATTCAAATAGATCTTAATAATTGGTTAGGTTTAATTATGTATTTTTTTTCCTTTTTTTATTTCTTTTCTTGTTTTCCATTTTGGTAGAGTAGACCCAAATTTATAGCTGTGTCCAGCTGTCTTTAAAGATGGACCACTTTCAAATTCCAAACTTCCAACCTTTTTTTAAAAAAATTAATTAAAGGTCTCATCAAAGAAACTTACTTGCATTCCAAGTTAGGATTTCATAAATTAGATTGATATAAAAATATGAAAATTAATATGTAAATAAAGTATATTAATGGTGGGTTTCAGATTCACAGACATCACAGCAAACTCCTACAGAAGCTGAAGCTGGAGCTGTTACTTCTGATCAAAGTCCAACCACTTGA

mRNA sequence

ATGGCTTACCCACATTACCGATCCCAATTTGGAGATACAACTTTCACTAAAGTTTTTGTTGGTGGCCTTGCCTGGGAAACTCCCACTCACCAAATGAGATCTTATTTTGAACAATTTGGTGACATTCTTGAAGCTGTGATTATCACTGATAAAAACACCTCCAAATCTAAAGGCTATGGATTTGTGACATTTCGCGATGCTGAATCTGCGAGAAGAGCTTGTGCAAATCCAAACCCGATAATCGATGGAAGACGTGCAAATTGTAACATTGCGGCATTGGGTCGACCTCGGCCTTCGCCTCCACGAGGACGAGGTCAGAGTAGTGTAAATCCATATCAAGGAAGTGCAATGCAAGCACAGGCAGTACCATCATATGGTGGAGTCCCGTCGCCGTTAAACCAGCCACCACTTCCTCCGCCACCTCCGCCGCCTCCCCCCGTCATGTATTCACCATACGGATACCCAGCTTACAGTCCTGATTATGGGTACCATCATCACCAAGCAGTATACAACCCACAAATTCAACAGCCACAAATGTATCAACAATCCCCATATTATTATGGGTATTCAGTACAATCGCCAAGAGGAACATTTCCCAGTCCTTCACAATCGCATCATCCTCGGCTAGTACTTTACTATCCTCCTTCACCTACAGCTACAACTCCTCAATTTGAAGCTTCCTTCAATTATCCTCCTCCTTTGATACCACACCGTTTTTCCTCTACAGATTCACAGACATCACAGCAAACTCCTACAGAAGCTGAAGCTGGAGCTGTTACTTCTGATCAAAGTCCAACCACTTGA

Coding sequence (CDS)

ATGGCTTACCCACATTACCGATCCCAATTTGGAGATACAACTTTCACTAAAGTTTTTGTTGGTGGCCTTGCCTGGGAAACTCCCACTCACCAAATGAGATCTTATTTTGAACAATTTGGTGACATTCTTGAAGCTGTGATTATCACTGATAAAAACACCTCCAAATCTAAAGGCTATGGATTTGTGACATTTCGCGATGCTGAATCTGCGAGAAGAGCTTGTGCAAATCCAAACCCGATAATCGATGGAAGACGTGCAAATTGTAACATTGCGGCATTGGGTCGACCTCGGCCTTCGCCTCCACGAGGACGAGGTCAGAGTAGTGTAAATCCATATCAAGGAAGTGCAATGCAAGCACAGGCAGTACCATCATATGGTGGAGTCCCGTCGCCGTTAAACCAGCCACCACTTCCTCCGCCACCTCCGCCGCCTCCCCCCGTCATGTATTCACCATACGGATACCCAGCTTACAGTCCTGATTATGGGTACCATCATCACCAAGCAGTATACAACCCACAAATTCAACAGCCACAAATGTATCAACAATCCCCATATTATTATGGGTATTCAGTACAATCGCCAAGAGGAACATTTCCCAGTCCTTCACAATCGCATCATCCTCGGCTAGTACTTTACTATCCTCCTTCACCTACAGCTACAACTCCTCAATTTGAAGCTTCCTTCAATTATCCTCCTCCTTTGATACCACACCGTTTTTCCTCTACAGATTCACAGACATCACAGCAAACTCCTACAGAAGCTGAAGCTGGAGCTGTTACTTCTGATCAAAGTCCAACCACTTGA

Protein sequence

MAYPHYRSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSAMQAQAVPSYGGVPSPLNQPPLPPPPPPPPPVMYSPYGYPAYSPDYGYHHHQAVYNPQIQQPQMYQQSPYYYGYSVQSPRGTFPSPSQSHHPRLVLYYPPSPTATTPQFEASFNYPPPLIPHRFSSTDSQTSQQTPTEAEAGAVTSDQSPTT

Homology

[Close]

BLAST of HG10013479 vs. NCBI nr
Match: XP_038897135.1 (RNA-binding protein 38 [Benincasa hispida])

HSP 1 Score: 464.2 bits (1193), Expect = 7.8e-127
Identity = 241/276 (87.32%), Postives = 250/276 (90.58%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRSQFGDTTFTKVFVGGLAWETPT  MR+YFEQFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDLMRTYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSAMQAQ 120
           FVTFRDAESARRACAN NPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGS MQ Q
Sbjct: 61  FVTFRDAESARRACANANPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQVQ 120

Query: 121 AVPSYGGVPSPLNQPPLPPPPPPPPPVMYSPYGYPAYSPDYGYHHHQAVYNPQIQQPQMY 180
           A PSYGGVPSPLNQPPLPPPPPPPPP++YSPYGYPAYSPDYGY HHQAVYNPQ+QQPQ+Y
Sbjct: 121 ATPSYGGVPSPLNQPPLPPPPPPPPPIVYSPYGYPAYSPDYGYQHHQAVYNPQVQQPQIY 180

Query: 181 QQSPYYYGYSVQSPRGTFPSPSQSHHPRLVL------YYPPSPT--ATTPQFE-ASFNYP 240
           QQSPY+YGYS+QSPRGTF +PSQSHHPRLVL      Y PPSPT  A   QFE AS NY 
Sbjct: 181 QQSPYFYGYSLQSPRGTFHNPSQSHHPRLVLPPSYVYYPPPSPTAAAAAAQFEAASINY- 240

Query: 241 PPLIPHRFSSTDSQTSQQTPTEAEAGAVTSDQSPTT 268
           PPLI HRFSSTDSQTSQQTPTE EAG VTSDQSPT+
Sbjct: 241 PPLIRHRFSSTDSQTSQQTPTEGEAGGVTSDQSPTS 275

[Close]

BLAST of HG10013479 vs. NCBI nr
Match: XP_004136431.1 (RNA-binding protein 38 [Cucumis sativus] >KGN60219.1 hypothetical protein Csa_001640 [Cucumis sativus])

HSP 1 Score: 438.3 bits (1126), Expect = 4.6e-119
Identity = 236/278 (84.89%), Postives = 247/278 (88.85%), Query Frame = 0


Query: 3   YPHYRSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYGFV 62
           YPHYRSQFGDTTFTKVFVGGLAWETPT QM++YFEQFGDILEAVIITDKNTSKSKGYGFV
Sbjct: 4   YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFV 63

Query: 63  TFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSAMQAQAV 122
           TFRD ESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGS MQAQA 
Sbjct: 64  TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQAT 123

Query: 123 PSYGGVPSPLNQPPLPPPPPPPPPVMYSPYGYPAYSPDYGY-HHHQAVYNPQIQQPQMYQ 182
           PSYGGVPSPLNQPP+PPPPPP PPV+YSPYGYPAYSPDYGY HHHQAVYNPQ+QQPQMYQ
Sbjct: 124 PSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQMYQ 183

Query: 183 QSPYYYGYSVQSPRGTFPSPSQSH-HPRLVL-----YYPPSPTATTPQFE-ASFNYP--- 242
           Q+PYYYGYS  S   TFP+PSQSH HPRL+L     YYPP P    PQFE +SFNYP   
Sbjct: 184 QTPYYYGYS--SRGTTFPNPSQSHQHPRLLLPPSYVYYPPPP--PPPQFEPSSFNYPPQP 243

Query: 243 -PPLIPHRFSSTDSQTSQQTPTEAEAGAVTSD-QSPTT 268
            P +I HRFSSTDSQTSQQTPTEAEAG VTSD QSPT+
Sbjct: 244 QPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPTS 277

[Close]

BLAST of HG10013479 vs. NCBI nr
Match: XP_022152706.1 (RNA-binding protein 38 [Momordica charantia])

HSP 1 Score: 399.4 bits (1025), Expect = 2.4e-107
Identity = 216/281 (76.87%), Postives = 234/281 (83.27%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAY HYRSQFGDTTFTKVFVGGLAWETPT +MR YFEQFG+ILEAVIITDKNT+KSKGYG
Sbjct: 1   MAYAHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSAMQAQ 120
           FVTFRD ESARRACANPNP+IDGRRANCNIAALGRPRPSPPRGR Q  +NPYQGS M  Q
Sbjct: 61  FVTFRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGINPYQGSTM--Q 120

Query: 121 AVPSYGGVPSPLNQPPLPPPPPPPPPVMYSPYGYPAYSPDYGYHHHQAVYNPQIQQPQMY 180
           A PSY GVP+PLNQPPLPP PPPPPPV+YSPYGYP+YSPDYGY H QAVYNPQ+QQPQ Y
Sbjct: 121 ATPSYSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPDYGY-HPQAVYNPQVQQPQYY 180

Query: 181 QQSPYYYGYSVQSPRGTFP-SPSQSHHPRL---VLYYPPSPTATTPQFEASFNY----PP 240
            QSPY YGYSVQSPR TF  +P QSHH R+    LYYP +  +   QFE S ++    PP
Sbjct: 181 HQSPYLYGYSVQSPRATFSNAPPQSHHHRVPPSYLYYPAAAPSPHAQFEPSSSFSNYPPP 240

Query: 241 PLIPHRFSSTDSQTSQQTPT------EAEAGAVTSDQSPTT 268
           PL+ HRFSSTDSQTSQQTPT      EAEAGAVTS +SP+T
Sbjct: 241 PLLRHRFSSTDSQTSQQTPTEAEAEAEAEAGAVTS-ESPST 277

[Close]

BLAST of HG10013479 vs. NCBI nr
Match: KAG6591668.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 397.9 bits (1021), Expect = 6.9e-107
Identity = 210/271 (77.49%), Postives = 225/271 (83.03%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRSQFGDTTFTKVFVGGLAWETPT +MR YFEQFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSAMQAQ 120
           FVTFRDAESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGRGQ  VNPYQGS M  Q
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTM--Q 120

Query: 121 AVPSYGGVPSPLNQPPLPPPPPPPPPVMYSPYGYPAYSPDYGYHHHQAVYNPQIQQPQMY 180
           A PSY GVP PLNQPPL   PPPPPPV+YSPYGYP Y+PDYGYHH    ++   QQP   
Sbjct: 121 AAPSYSGVPPPLNQPPL---PPPPPPVVYSPYGYPTYTPDYGYHHQHYQHH---QQP--- 180

Query: 181 QQSPYYYGYSVQSPRGTFPSPSQSHHPRL-----VLYYPPSPTATTPQFEASFNYPPPLI 240
             +PY+YGYS+QSPRG FPSPSQSH PR+     V Y PP+  A   QFE SF+YPPPLI
Sbjct: 181 VYNPYFYGYSLQSPRGAFPSPSQSHQPRVAVPPYVYYPPPAAAAAAAQFEGSFSYPPPLI 240

Query: 241 PHRFSSTDSQTSQQTPTEAEAGAVTSDQSPT 267
            HRF+STDSQTSQQTP EAEA AVTS+ S T
Sbjct: 241 RHRFASTDSQTSQQTPPEAEAEAVTSETSTT 260

[Close]

BLAST of HG10013479 vs. NCBI nr
Match: KAG7024550.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 396.4 bits (1017), Expect = 2.0e-106
Identity = 210/272 (77.21%), Postives = 226/272 (83.09%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRSQFGDTTFTKVFVGGLAWETPT +MR YFEQFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSAMQAQ 120
           FVTFRDAESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGRGQ  VNPYQGS M  Q
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTM--Q 120

Query: 121 AVPSYGGVPSPLNQPPLPPPPPPPPPVMYSPYGYPAYSPDYGYHHHQAVYNPQIQQPQMY 180
           A PSY GVP PLNQPPL   PPPPPPV+YSPYGYP Y+PDYGYHH    ++   QQP   
Sbjct: 121 AAPSYSGVPPPLNQPPL---PPPPPPVVYSPYGYPTYTPDYGYHHQHYQHH---QQP--- 180

Query: 181 QQSPYYYGYSVQSPRGTFPSPSQSHHPRLV----LYYPP--SPTATTPQFEASFNYPPPL 240
             +PY+YGYS+QSPRG FPSPSQSH PR+     +YYPP  +  A   QFE SF+YPPPL
Sbjct: 181 VYNPYFYGYSLQSPRGAFPSPSQSHQPRVAVPPYVYYPPPAAAAAAAAQFEGSFSYPPPL 240

Query: 241 IPHRFSSTDSQTSQQTPTEAEAGAVTSDQSPT 267
           I HRF+STDSQTSQQTP EAEA AVTS+ S T
Sbjct: 241 IRHRFASTDSQTSQQTPPEAEAEAVTSETSTT 261

[Close]

BLAST of HG10013479 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.2e-26
Identity = 86/209 (41.15%), Postives = 106/209 (50.72%), Query Frame = 0


Query: 10  FGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAES 69
           FGDT  TKVFVGGLAW+T    M  +F ++GDILEAVII+DK T +SKGYGFVTF+DA++
Sbjct: 11  FGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKA 70

Query: 70  ARRACANPNPIIDGRRANCNIAAL-GRPRPSPPRGRGQSSVNPYQGSAMQAQAVPSYGGV 129
           A RAC +  PII+GRRANCN+A+L GR R SP      +  +P QG     +A P + G 
Sbjct: 71  ATRACEDSTPIINGRRANCNLASLGGRLRKSP------TMTSPQQGPKNGNRATPPHVGN 130

Query: 130 PSPLNQPPLPPPPPPPPPVMYSPYGYPAYS---------PDYGYHHHQAVYNPQIQQPQM 189
            S                  Y P G+             P YGY       N    Q   
Sbjct: 131 HSQ----------------WYYPSGFTNQQHQQQNHQAVPFYGYPSAYVAPNMTFNQKVG 190

Query: 190 YQQSPYYYGY--SVQSPRGTFPSPSQSHH 207
           Y    Y  GY   +Q    + P P   HH
Sbjct: 191 YVGGTYMNGYYAQMQPQPQSQPQPQYYHH 197

[Close]

BLAST of HG10013479 vs. ExPASy Swiss-Prot
Match: Q9H0Z9 (RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 9.3e-22
Identity = 81/188 (43.09%), Postives = 100/188 (53.19%), Query Frame = 0


Query: 12  DTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 71
           DTTFTK+FVGGL + T    +R YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 30  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89

Query: 72  RACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSAMQAQAVPSYGGVPSP 131
           RAC +PNPIIDGR+AN N+A LG  +P   +      V     + +Q     +YG  P  
Sbjct: 90  RACKDPNPIIDGRKANVNLAYLG-AKPRSLQTGFAIGVQQLHPTLIQR----TYGLTPHY 149

Query: 132 LNQPPLPPP----PPPPPPVMYSPY-GYPAYSPDYGYHHHQAVYNPQIQQPQMYQQSP-- 191
           +  P +  P    P  P P + SPY  Y   SP Y      A Y P       Y  SP  
Sbjct: 150 IYPPAIVQPSVVIPAAPVPSLSSPYIEYTPASPAY------AQYPPATYDQYPYAASPAT 206

[Close]

BLAST of HG10013479 vs. ExPASy Swiss-Prot
Match: Q7T3I7 (RNA-binding protein 38 OS=Xenopus laevis OX=8355 GN=rbm38 PE=1 SV=2)

HSP 1 Score: 105.1 bits (261), Expect = 1.2e-21
Identity = 86/208 (41.35%), Postives = 108/208 (51.92%), Query Frame = 0


Query: 12  DTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 71
           DTTFTK+FVGGL + T    +R YFE FGDI EAV+ITD+ T+KS+GYGFVT  D  +A 
Sbjct: 7   DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAE 66

Query: 72  RACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSAMQAQAVPSYGGVPSP 131
           RAC +PNPIIDGR+AN N+A LG    + PR   QS+          A     +G  P  
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG----AKPRNL-QSAFTIGVQQLHPAFIQRPFGLTPQY 126

Query: 132 LNQPPLPPPP---PPPPPVMYSPY-GYPAYSPDYGYHHHQAVYNPQIQQPQMYQQSPYYY 191
           +  P +  P    P P P + SPY  Y A +  Y  H+  A Y    Q P     +  Y 
Sbjct: 127 IYPPTIVQPSMVIPTPIPSLQSPYIDYNAATQAY-THYTTAAYE---QYPYAASPATGYM 186

Query: 192 GYSVQSPRGTFPSPSQSHHPRLVLYYPP 216
           GY   SP     S +    P   + Y P
Sbjct: 187 GYGYTSPVQQPLSTTTGAPPTAYIQYQP 205

[Close]

BLAST of HG10013479 vs. ExPASy Swiss-Prot
Match: Q62176 (RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2)

HSP 1 Score: 104.8 bits (260), Expect = 1.6e-21
Identity = 82/195 (42.05%), Postives = 101/195 (51.79%), Query Frame = 0


Query: 12  DTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 71
           DTTFTK+FVGGL + T    +R YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 28  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAD 87

Query: 72  RACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSAMQAQAVPSYGGVPSP 131
           RAC +PNPIIDGR+AN N+A LG  +P   +      V     + +Q     +YG  P  
Sbjct: 88  RACKDPNPIIDGRKANVNLAYLG-AKPRSLQTGFAVGVQQLHPTLIQR----TYGLTPHY 147

Query: 132 LNQPPLPPP----PPPPPPVMYSPY-GYPAYSPDYGYHHHQAVYNPQIQQPQMYQQSP-- 191
           +  P +  P    P  P P + SPY  Y   SP Y      A Y P       Y  SP  
Sbjct: 148 IYPPAIVQPSVVIPATPVPSLSSPYLEYTPASPAY------AQYPPATYDQYPYAASPAA 207

Query: 192 ----YYYGYSVQSPR 196
                 YGY    P+
Sbjct: 208 ATSFVGYGYPAAVPQ 211

[Close]

BLAST of HG10013479 vs. ExPASy Swiss-Prot
Match: Q5ZMA3 (RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2)

HSP 1 Score: 104.0 bits (258), Expect = 2.7e-21
Identity = 79/199 (39.70%), Postives = 101/199 (50.75%), Query Frame = 0


Query: 12  DTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 71
           DTT+TK+FVGGL + T    +R YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  RACANPNPIIDGRRANCNIAALG-RPR-PSPPRGRGQSSVNPYQGSAMQAQAVPSYGGVP 131
           RAC +PNPIIDGR+AN N+A LG +PR   P    G   ++P      +   +P++   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHP--ALIQRPFGIPAHYVYP 126

Query: 132 SPLNQPPLPPPPPPPPPVMYSPYGYPAYSPDYGYHHHQAVYNPQIQQPQMYQQSPYY--- 191
               QP +  P   P     S   Y  Y+         A Y         Y+Q PY    
Sbjct: 127 QAFVQPGVVIPHVQPAAAAASTTPYIGYT--------GAAYAQYSAAAAAYEQYPYAASP 186

Query: 192 -----------YGYSVQSP 195
                      YGY+VQ P
Sbjct: 187 AAAAGYVAAGGYGYAVQQP 195

[Close]

BLAST of HG10013479 vs. ExPASy TrEMBL
Match: A0A0A0LGV2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G889750 PE=4 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 2.2e-119
Identity = 236/278 (84.89%), Postives = 247/278 (88.85%), Query Frame = 0


Query: 3   YPHYRSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYGFV 62
           YPHYRSQFGDTTFTKVFVGGLAWETPT QM++YFEQFGDILEAVIITDKNTSKSKGYGFV
Sbjct: 4   YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFV 63

Query: 63  TFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSAMQAQAV 122
           TFRD ESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGS MQAQA 
Sbjct: 64  TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQAT 123

Query: 123 PSYGGVPSPLNQPPLPPPPPPPPPVMYSPYGYPAYSPDYGY-HHHQAVYNPQIQQPQMYQ 182
           PSYGGVPSPLNQPP+PPPPPP PPV+YSPYGYPAYSPDYGY HHHQAVYNPQ+QQPQMYQ
Sbjct: 124 PSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQMYQ 183

Query: 183 QSPYYYGYSVQSPRGTFPSPSQSH-HPRLVL-----YYPPSPTATTPQFE-ASFNYP--- 242
           Q+PYYYGYS  S   TFP+PSQSH HPRL+L     YYPP P    PQFE +SFNYP   
Sbjct: 184 QTPYYYGYS--SRGTTFPNPSQSHQHPRLLLPPSYVYYPPPP--PPPQFEPSSFNYPPQP 243

Query: 243 -PPLIPHRFSSTDSQTSQQTPTEAEAGAVTSD-QSPTT 268
            P +I HRFSSTDSQTSQQTPTEAEAG VTSD QSPT+
Sbjct: 244 QPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPTS 277

[Close]

BLAST of HG10013479 vs. ExPASy TrEMBL
Match: A0A6J1DIJ5 (RNA-binding protein 38 OS=Momordica charantia OX=3673 GN=LOC111020331 PE=4 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 1.1e-107
Identity = 216/281 (76.87%), Postives = 234/281 (83.27%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAY HYRSQFGDTTFTKVFVGGLAWETPT +MR YFEQFG+ILEAVIITDKNT+KSKGYG
Sbjct: 1   MAYAHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSAMQAQ 120
           FVTFRD ESARRACANPNP+IDGRRANCNIAALGRPRPSPPRGR Q  +NPYQGS M  Q
Sbjct: 61  FVTFRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGINPYQGSTM--Q 120

Query: 121 AVPSYGGVPSPLNQPPLPPPPPPPPPVMYSPYGYPAYSPDYGYHHHQAVYNPQIQQPQMY 180
           A PSY GVP+PLNQPPLPP PPPPPPV+YSPYGYP+YSPDYGY H QAVYNPQ+QQPQ Y
Sbjct: 121 ATPSYSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPDYGY-HPQAVYNPQVQQPQYY 180

Query: 181 QQSPYYYGYSVQSPRGTFP-SPSQSHHPRL---VLYYPPSPTATTPQFEASFNY----PP 240
            QSPY YGYSVQSPR TF  +P QSHH R+    LYYP +  +   QFE S ++    PP
Sbjct: 181 HQSPYLYGYSVQSPRATFSNAPPQSHHHRVPPSYLYYPAAAPSPHAQFEPSSSFSNYPPP 240

Query: 241 PLIPHRFSSTDSQTSQQTPT------EAEAGAVTSDQSPTT 268
           PL+ HRFSSTDSQTSQQTPT      EAEAGAVTS +SP+T
Sbjct: 241 PLLRHRFSSTDSQTSQQTPTEAEAEAEAEAGAVTS-ESPST 277

[Close]

BLAST of HG10013479 vs. ExPASy TrEMBL
Match: A0A6J1F8X9 (RNA-binding protein 38-like OS=Cucurbita moschata OX=3662 GN=LOC111443164 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 7.0e-105
Identity = 209/272 (76.84%), Postives = 224/272 (82.35%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRSQFGDTTFTKVFVGGLAWETPT +MR YFEQFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSAMQAQ 120
           FVTFRDAESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGRGQ  VNPYQGS M  Q
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTM--Q 120

Query: 121 AVPSYGGVPSPLNQPPLPPPPPPPPPVMYSPYGYPAYSPDYGYHHHQAVYNPQIQQPQMY 180
           A PSY GVP PLNQPPL   PPPPPPV+YSPYGYP Y+ DYGYHH    ++   QQP   
Sbjct: 121 AAPSYSGVPPPLNQPPL---PPPPPPVVYSPYGYPTYTTDYGYHHQHYQHH---QQP--- 180

Query: 181 QQSPYYYGYSVQSPRGTFPSPSQSHHPRL-----VLYYPPSPTATTPQFEASFNY-PPPL 240
             +PY+YGYS+QSPRG FPSPSQSH PR+     V Y PP+  A   QFE SF+Y PPPL
Sbjct: 181 VYNPYFYGYSLQSPRGAFPSPSQSHQPRVAVPPYVYYPPPAAAAAAAQFEGSFSYPPPPL 240

Query: 241 IPHRFSSTDSQTSQQTPTEAEAGAVTSDQSPT 267
           I HRF+STDSQTSQQTP EAEA AVTS+ S T
Sbjct: 241 IRHRFASTDSQTSQQTPPEAEAEAVTSETSTT 261

[Close]

BLAST of HG10013479 vs. ExPASy TrEMBL
Match: A0A6J1IJV9 (RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111475419 PE=4 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 1.3e-103
Identity = 207/273 (75.82%), Postives = 220/273 (80.59%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRSQFGDTT TKVFVGGLAWETPT +MR YFEQFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MAYPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSAMQAQ 120
           FVTFRDAESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGRGQ  VNPYQGS M  Q
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTM--Q 120

Query: 121 AVPSYGGVPSPLNQPPLPPPPPPPPPVMYSPYGYPAYSPDYGYHHHQAVYNPQIQQPQMY 180
           A PSY GVP PLNQPPL    PPPPPV+YSPYGYP Y+PDYGYH H        Q  Q  
Sbjct: 121 AAPSYSGVPPPLNQPPL----PPPPPVVYSPYGYPTYTPDYGYHQH-------YQHHQQP 180

Query: 181 QQSPYYYGYSVQSPRGTFPSPSQSHHPRLV----LYYPPSPTATTPQFEASFNY---PPP 240
             +PY+YGYSVQSPRG FP PSQSH PR+     +YYP  P A   Q+E SF+Y   PPP
Sbjct: 181 VYNPYFYGYSVQSPRGAFPIPSQSHQPRVAVPPYVYYP--PPAAAAQYEGSFSYPPPPPP 240

Query: 241 LIPHRFSSTDSQTSQQTPTEAEAGAVTSDQSPT 267
           LI HRF+STDSQTSQQTPTEAEA AVTS+ S T
Sbjct: 241 LIRHRFASTDSQTSQQTPTEAEAEAVTSETSTT 258

[Close]

BLAST of HG10013479 vs. ExPASy TrEMBL
Match: A0A6J1AEH8 (RNA-binding protein 24 OS=Herrania umbratica OX=108875 GN=LOC110417300 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 2.9e-87
Identity = 191/282 (67.73%), Postives = 207/282 (73.40%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRS FGDTT TKVFVGGLAWETPT +MR YFEQFG+ILEAVIITDKNT KSKGYG
Sbjct: 1   MAYPHYRSPFGDTTLTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTGKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSAMQAQ 120
           FVTF D ESARRAC +PNP+IDGRRANCNIA+LGRPRPSPPRGR Q S +PYQG A   Q
Sbjct: 61  FVTFCDPESARRACVDPNPVIDGRRANCNIASLGRPRPSPPRGRNQGS-SPYQGVAQ--Q 120

Query: 121 AVPSYGGVPSPLNQPPLPPPPPPPPPVMYSPYGYPAYSPDYGYHHHQAVYNPQIQQPQMY 180
             PSY GV +     P+PPPPPPPPPV+Y PYGYP YSPDYGY  HQA+YNPQIQQPQ Y
Sbjct: 121 GAPSYSGVAA-----PVPPPPPPPPPVIYPPYGYPTYSPDYGY--HQALYNPQIQQPQYY 180

Query: 181 QQ----------SPYYYGYSVQSPRGTFPSPSQSHHP-RLVLYYPPSPTATTPQFEASFN 240
            Q          SPYYYGYS+Q+PRGTF +P     P    LYYP        Q E SF+
Sbjct: 181 HQLYGSSSTTMGSPYYYGYSLQAPRGTFSAPQAQRIPGPSYLYYP-------TQMEGSFS 240

Query: 241 -YPPP---LIPHRF-SSTDSQTSQQTPTEAEAGAVTSDQSPT 267
            YPPP   L  H F SSTDSQT QQT TE EAG +TS+   T
Sbjct: 241 TYPPPPFHLTRHPFPSSTDSQTPQQTSTETEAGDITSESPKT 265

[Close]

BLAST of HG10013479 vs. TAIR 10
Match: AT1G78260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 224.2 bits (570), Expect = 1.3e-58
Identity = 149/294 (50.68%), Postives = 180/294 (61.22%), Query Frame = 0


Query: 5   HYRSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYGFVTF 64
           +YRS FGDTT+TKVFVGGLAWETPT +MR YFEQFG+ILEAVIITDKNT KSKGYGFVTF
Sbjct: 6   YYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65

Query: 65  RDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSAMQAQAVPS 124
           R+++SA RA A+PNP+IDGR+ANCNIA+ GRPRPSPPRGRGQ+      GS  Q Q+   
Sbjct: 66  RESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQT------GSPSQYQS--- 125

Query: 125 YGGVPSPLNQPPLPPPPPPPPPVMYSPYGYPAYSPD-YGYHHHQAVYNPQIQQPQMYQQ- 184
             G PS       P PP   P +MY  YGY  Y+PD +GY  HQA+YN Q+QQ Q YQQ 
Sbjct: 126 --GGPSTYTGMAAPLPPAAAPQLMYPSYGY-TYNPDQFGY--HQALYNTQLQQAQYYQQQ 185

Query: 185 --------------------SPYYYGYSVQSPRGTFP---------SPSQSHHPRLVLYY 244
                               SPYYYGYS+Q+PR  +          +P Q HH R     
Sbjct: 186 QQLYGGGATSPSSSGATIMPSPYYYGYSLQAPRVPYQHHHHLPQPYNPQQHHHQRF---- 245

Query: 245 PPSPTATTPQFEASFNYPPPLIPHRFSSTDSQTSQQTPTEAEAGAVTSDQSPTT 268
             SP+     + ++ ++ PPL     SST+S+   Q    AE  A T+    TT
Sbjct: 246 -SSPSFLV--YPSNSSFAPPLQGVLSSSTESEAVPQQVPAAEGEATTTAPEITT 278

[Close]

BLAST of HG10013479 vs. TAIR 10
Match: AT1G78260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 221.9 bits (564), Expect = 6.3e-58
Identity = 137/253 (54.15%), Postives = 161/253 (63.64%), Query Frame = 0


Query: 5   HYRSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYGFVTF 64
           +YRS FGDTT+TKVFVGGLAWETPT +MR YFEQFG+ILEAVIITDKNT KSKGYGFVTF
Sbjct: 6   YYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65

Query: 65  RDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSAMQAQAVPS 124
           R+++SA RA A+PNP+IDGR+ANCNIA+ GRPRPSPPRGRGQ+      GS  Q Q+   
Sbjct: 66  RESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQT------GSPSQYQS--- 125

Query: 125 YGGVPSPLNQPPLPPPPPPPPPVMYSPYGYPAYSPD-YGYHHHQAVYNPQIQQPQMYQQ- 184
             G PS       P PP   P +MY  YGY  Y+PD +GY  HQA+YN Q+QQ Q YQQ 
Sbjct: 126 --GGPSTYTGMAAPLPPAAAPQLMYPSYGY-TYNPDQFGY--HQALYNTQLQQAQYYQQQ 185

Query: 185 --------------------SPYYYGYSVQSPRGTFP---------SPSQSHHPRL---- 223
                               SPYYYGYS+Q+PR  +          +P Q HH R     
Sbjct: 186 QQLYGGGATSPSSSGATIMPSPYYYGYSLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSPS 244

[Close]

BLAST of HG10013479 vs. TAIR 10
Match: AT1G22330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 196.1 bits (497), Expect = 3.7e-50
Identity = 143/299 (47.83%), Postives = 167/299 (55.85%), Query Frame = 0


Query: 5   HYRSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYGFVTF 64
           +YRS FGDTT TKVFVGGLAWETPT +MR YF+QFG+ILEAVIITDK T KSKGYGFVTF
Sbjct: 6   YYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTF 65

Query: 65  RDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQ-SSVNPYQGSAMQAQAVP 124
           RD++SA RA A+PNP+IDGR+ANCNIA+ GRPRPS PRGRGQ  S + YQG         
Sbjct: 66  RDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQYQGGGQS----- 125

Query: 125 SYGGVPSPLNQPPLPPPPPPPPPVMYSPYGYPAYSPDYGYHHHQAVYNPQIQQPQMYQQ- 184
           SY G+ +P+ Q            +MY  YGY  Y+ +YGY  HQA+YN Q+QQ Q YQQ 
Sbjct: 126 SYTGMAAPVQQ-------AAAAQLMYPSYGY-TYNSEYGY--HQALYNAQLQQAQYYQQQ 185

Query: 185 -----------------SPYYYGYSVQSPRGTFPSPS--QSHHPR--------------L 244
                            SPYYY     SPR         Q HH +               
Sbjct: 186 MYGGGGATSPSSSNIMPSPYYY-LQAPSPRPYLHHQQHYQYHHHQQQQQQQQQRLPSASS 245

Query: 245 VLYYPPSPTATTPQFEASFNYPPPLIPHRFSSTDSQTSQQTPTE-AEAGAVTSDQSPTT 268
            L YP +  A TP      N P    P   SST+S   QQ   E  E     + +S TT
Sbjct: 246 YLIYPSNVEAPTPS-----NVPTSQGP-LSSSTESHAPQQVSEEGGEFDPTDAPESTTT 282

[Close]

BLAST of HG10013479 vs. TAIR 10
Match: AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 157.9 bits (398), Expect = 1.1e-38
Identity = 104/207 (50.24%), Postives = 124/207 (59.90%), Query Frame = 0


Query: 5   HY-RSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYGFVT 64
           HY  S FGDTTFTKVFVGGLAWET +  +R +FEQ+G+ILEAV+I DKNT +SKGYGFVT
Sbjct: 12  HYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVT 71

Query: 65  FRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSAMQAQAVP 124
           FRD E+ARRACA+P PIIDGRRANCN+A+LGRPRP  P      +V P     ++  A P
Sbjct: 72  FRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLP-----YAVIPNMPGRLR-PASP 131

Query: 125 SYGGVPSPL-----NQPPLPPPPPPPPPVMYSPYGYPAYSPDYGYHHHQAVYNPQIQQ-- 184
             G V  P      N P   P P      +  PYG  AY P+Y Y   Q +Y+P + Q  
Sbjct: 132 YIGNVQGPRGSLIGNYPYQQPLPYNYQQGVVYPYGVTAYGPEYMYSQSQGLYSPYMGQQY 191

Query: 185 ------PQMYQQSPYYYGYSVQS-PRG 197
                 P       Y YG   Q+ P G
Sbjct: 192 LQVYGVPGAVNSPVYQYGQLSQTIPNG 212

[Close]

BLAST of HG10013479 vs. TAIR 10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 156.0 bits (393), Expect = 4.3e-38
Identity = 116/266 (43.61%), Postives = 139/266 (52.26%), Query Frame = 0


Query: 5   HY-RSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYGFVT 64
           HY  S FGDTTFTKVFVGGLAWET +  +R +F+Q+GDILEAV+ITDKNT +SKGYGFVT
Sbjct: 12  HYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVT 71

Query: 65  FRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSAMQAQAVP 124
           FRD E+ARRAC +P PIIDGRRANCN+A+LGR RP       Q +V P+    ++  + P
Sbjct: 72  FRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPM-----QYAVIPHAPGRVRPPS-P 131

Query: 125 SYGGVPSPLNQPPLPPPPPPPPPVMYS-----PYGYPAYSPDYGYHHHQAVYNPQIQQ-- 184
             G V SP        P   PP   Y      PYG   Y PDY Y   Q  Y P + Q  
Sbjct: 132 YVGSVQSPRGLHFGSHPYHQPPTYNYQQGVVYPYGVTPYGPDYMYSQSQGFYGPYMGQQY 191

Query: 185 ------PQMYQQSPYYYG---YSVQSPRGTFPSPSQSHHPRLVLYYPPSPTATTPQFEAS 244
                 P       Y YG   +++    G       SH    VL       AT+P     
Sbjct: 192 LQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQL----GATSPMSAIQ 251

Query: 245 FNYPPPLIPHRFSSTDSQTSQQTPTE 254
             YP P  P     T  +   QTP +
Sbjct: 252 SPYPSPSAP-----THQRVIVQTPPQ 262

The following BLAST results are available for this feature:

BLAST of HG10013479 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897135.1	7.8e-127	87.32	RNA-binding protein 38 [Benincasa hispida]	[more]
XP_004136431.1	4.6e-119	84.89	RNA-binding protein 38 [Cucumis sativus] >KGN60219.1 hypothetical protein Csa_00...	[more]
XP_022152706.1	2.4e-107	76.87	RNA-binding protein 38 [Momordica charantia]	[more]
KAG6591668.1	6.9e-107	77.49	putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7024550.1	2.0e-106	77.21	putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of HG10013479 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	6.2e-26	41.15	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q9H0Z9	9.3e-22	43.09	RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2	[more]
Q7T3I7	1.2e-21	41.35	RNA-binding protein 38 OS=Xenopus laevis OX=8355 GN=rbm38 PE=1 SV=2	[more]
Q62176	1.6e-21	42.05	RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2	[more]
Q5ZMA3	2.7e-21	39.70	RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2	[more]

BLAST of HG10013479 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGV2	2.2e-119	84.89	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G889750 PE=4 SV...	[more]
A0A6J1DIJ5	1.1e-107	76.87	RNA-binding protein 38 OS=Momordica charantia OX=3673 GN=LOC111020331 PE=4 SV=1	[more]
A0A6J1F8X9	7.0e-105	76.84	RNA-binding protein 38-like OS=Cucurbita moschata OX=3662 GN=LOC111443164 PE=4 S...	[more]
A0A6J1IJV9	1.3e-103	75.82	RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111475419 PE=4 SV=...	[more]
A0A6J1AEH8	2.9e-87	67.73	RNA-binding protein 24 OS=Herrania umbratica OX=108875 GN=LOC110417300 PE=4 SV=1	[more]

BLAST of HG10013479 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78260.1	1.3e-58	50.68	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G78260.2	6.3e-58	54.15	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22330.1	3.7e-50	47.83	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76460.1	1.1e-38	50.24	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	4.3e-38	43.61	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..89 e-value: 6.1E-23 score: 92.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..76 e-value: 4.0E-16 score: 58.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..93 score: 16.022581
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 3..109 e-value: 1.3E-24 score: 88.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 225..267
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 238..267
None	No IPR available	PANTHER	PTHR11176:SF23	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 1..253
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 16..91 e-value: 4.05265E-44 score: 141.984
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 1..253
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 9..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10013479.1	HG10013479.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding