HG10013470 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10013470
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	thylakoid lumenal 29 kDa protein, chloroplastic
Location	Chr02: 1826792 .. 1827301 (+)
RNA-Seq Expression	HG10013470
Synteny	HG10013470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAAAATTTTGTTTGGACTTTCGGCAGCTAGCTGTTCTGTCCGCGTTTCTGGGTCCTGATCAGGCAGCAACTGAGGAATTACTAGCCTCAGATCCTGAAGTTTTTCCATGGGTTCAAAAGTATCAACGTAGCCGTGAAACAGTATCTCAGACTGATTATGAGGTGAGTACATGATTATTTATTTCTTTTCTGGTCAGCATTAAAAGGGATGGTACTTAGTACTAAACACGAATGTTTAGGTTTCTACCCTTTTTTGGTGGGCATGAATAGGATTTCACATTAACTGCTTTTGTTTTCAGTCTAATCACATCTTCACACAATTGAATCCAATATATATATATACATCTCCATGTGACCTTGTATTCTCATACTTAGCTTTATGACCTATTCCTTCAGGTTGATCTAATAACCACTCTTACAAAAATAAGTAGCTTGGGACAGCAGATAAATTATGAGGCTTACACCTATCCAGTTAAGAAAGTTGATTTGAGCAAACTCAAGTTATAG

mRNA sequence

ATGCTAAAATTTTGTTTGGACTTTCGGCAGCTAGCTGTTCTGTCCGCGTTTCTGGGTCCTGATCAGGCAGCAACTGAGGAATTACTAGCCTCAGATCCTGAAGTTTTTCCATGGGTTCAAAAGTATCAACGTAGCCGTGAAACAGTATCTCAGACTGATTATGAGGTTGATCTAATAACCACTCTTACAAAAATAAGTAGCTTGGGACAGCAGATAAATTATGAGGCTTACACCTATCCAGTTAAGAAAGTTGATTTGAGCAAACTCAAGTTATAG

Coding sequence (CDS)

ATGCTAAAATTTTGTTTGGACTTTCGGCAGCTAGCTGTTCTGTCCGCGTTTCTGGGTCCTGATCAGGCAGCAACTGAGGAATTACTAGCCTCAGATCCTGAAGTTTTTCCATGGGTTCAAAAGTATCAACGTAGCCGTGAAACAGTATCTCAGACTGATTATGAGGTTGATCTAATAACCACTCTTACAAAAATAAGTAGCTTGGGACAGCAGATAAATTATGAGGCTTACACCTATCCAGTTAAGAAAGTTGATTTGAGCAAACTCAAGTTATAG

Protein sequence

MLKFCLDFRQLAVLSAFLGPDQAATEELLASDPEVFPWVQKYQRSRETVSQTDYEVDLITTLTKISSLGQQINYEAYTYPVKKVDLSKLKL

Homology

[Close]

BLAST of HG10013470 vs. NCBI nr
Match: XP_038897501.1 (thylakoid lumenal 29 kDa protein, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 161.4 bits (407), Expect = 3.7e-36
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 9   RQLAVLSAFLGPDQAATEELLASDPEVFPWVQKYQRSRETVSQTDYEVDLITTLTKISSL 68
           RQLAVLSAFLGPDQAATEELLASDP VFPW+QKYQRSRETVSQTDYEVDLITTLTKISSL
Sbjct: 265 RQLAVLSAFLGPDQAATEELLASDPNVFPWIQKYQRSRETVSQTDYEVDLITTLTKISSL 324

Query: 69  GQQINYEAYTYPVKKVDLSKLKL 92
           GQQINYEAYTYPVKKVDLSKLKL
Sbjct: 325 GQQINYEAYTYPVKKVDLSKLKL 347

[Close]

BLAST of HG10013470 vs. NCBI nr
Match: XP_038897502.1 (thylakoid lumenal 29 kDa protein, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 161.4 bits (407), Expect = 3.7e-36
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 9   RQLAVLSAFLGPDQAATEELLASDPEVFPWVQKYQRSRETVSQTDYEVDLITTLTKISSL 68
           RQLAVLSAFLGPDQAATEELLASDP VFPW+QKYQRSRETVSQTDYEVDLITTLTKISSL
Sbjct: 198 RQLAVLSAFLGPDQAATEELLASDPNVFPWIQKYQRSRETVSQTDYEVDLITTLTKISSL 257

Query: 69  GQQINYEAYTYPVKKVDLSKLKL 92
           GQQINYEAYTYPVKKVDLSKLKL
Sbjct: 258 GQQINYEAYTYPVKKVDLSKLKL 280

[Close]

BLAST of HG10013470 vs. NCBI nr
Match: XP_008466210.1 (PREDICTED: thylakoid lumenal 29 kDa protein, chloroplastic isoform X1 [Cucumis melo] >KAA0038694.1 thylakoid lumenal 29 kDa protein [Cucumis melo var. makuwa] >TYK31305.1 thylakoid lumenal 29 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 4.8e-36
Identity = 81/83 (97.59%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 9   RQLAVLSAFLGPDQAATEELLASDPEVFPWVQKYQRSRETVSQTDYEVDLITTLTKISSL 68
           RQLAVLSAFLGPDQAATEELLASDP+VFPWVQKYQRSRETVSQTDYEVDLITTLTKISSL
Sbjct: 266 RQLAVLSAFLGPDQAATEELLASDPDVFPWVQKYQRSRETVSQTDYEVDLITTLTKISSL 325

Query: 69  GQQINYEAYTYPVKKVDLSKLKL 92
           GQQINYEAY+YPVKKVDLSKLKL
Sbjct: 326 GQQINYEAYSYPVKKVDLSKLKL 348

[Close]

BLAST of HG10013470 vs. NCBI nr
Match: XP_004136276.1 (thylakoid lumenal 29 kDa protein, chloroplastic [Cucumis sativus] >KGN60228.1 hypothetical protein Csa_001427 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 4.8e-36
Identity = 81/83 (97.59%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 9   RQLAVLSAFLGPDQAATEELLASDPEVFPWVQKYQRSRETVSQTDYEVDLITTLTKISSL 68
           RQLAVLSAFLGPDQAATEELLASDP+VFPWVQKYQRSRETVSQTDYEVDLITTLTKISSL
Sbjct: 286 RQLAVLSAFLGPDQAATEELLASDPDVFPWVQKYQRSRETVSQTDYEVDLITTLTKISSL 345

Query: 69  GQQINYEAYTYPVKKVDLSKLKL 92
           GQQINYEAY+YPVKKVDLSKLKL
Sbjct: 346 GQQINYEAYSYPVKKVDLSKLKL 368

[Close]

BLAST of HG10013470 vs. NCBI nr
Match: XP_022133449.1 (thylakoid lumenal 29 kDa protein, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 161.0 bits (406), Expect = 4.8e-36
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 9   RQLAVLSAFLGPDQAATEELLASDPEVFPWVQKYQRSRETVSQTDYEVDLITTLTKISSL 68
           RQLAVLSAFLGPDQAATEE LASDP+VFPWVQKYQRSRETVSQTDYEVDLITTLTKISSL
Sbjct: 261 RQLAVLSAFLGPDQAATEEFLASDPDVFPWVQKYQRSRETVSQTDYEVDLITTLTKISSL 320

Query: 69  GQQINYEAYTYPVKKVDLSKLKL 92
           GQQINYEAYTYPVKKVDLSKLKL
Sbjct: 321 GQQINYEAYTYPVKKVDLSKLKL 343

[Close]

BLAST of HG10013470 vs. ExPASy Swiss-Prot
Match: Q9THX6 (Thylakoid lumenal 29 kDa protein, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CLEB3J9 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 6.2e-34
Identity = 69/83 (83.13%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 9   RQLAVLSAFLGPDQAATEELLASDPEVFPWVQKYQRSRETVSQTDYEVDLITTLTKISSL 68
           RQLAV+S+FLGPDQAATE LLASDPEV PW+QKYQRSRETVS+TDYEVDLITT+TK+SSL
Sbjct: 263 RQLAVMSSFLGPDQAATEALLASDPEVLPWIQKYQRSRETVSRTDYEVDLITTVTKLSSL 322

Query: 69  GQQINYEAYTYPVKKVDLSKLKL 92
           GQ INYEAYTYP +K+D++KLKL
Sbjct: 323 GQVINYEAYTYPPRKIDVTKLKL 345

[Close]

BLAST of HG10013470 vs. ExPASy Swiss-Prot
Match: P82281 (Thylakoid lumenal 29 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TL29 PE=1 SV=2)

HSP 1 Score: 143.7 bits (361), Expect = 1.0e-33
Identity = 69/83 (83.13%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 9   RQLAVLSAFLGPDQAATEELLASDPEVFPWVQKYQRSRETVSQTDYEVDLITTLTKISSL 68
           RQLAV+SAFLGPDQAATE+LLA+DP+V PWVQKYQRSRETVSQTDYEVDLIT  TK+S L
Sbjct: 267 RQLAVMSAFLGPDQAATEQLLATDPQVAPWVQKYQRSRETVSQTDYEVDLITAFTKLSCL 326

Query: 69  GQQINYEAYTYPVKKVDLSKLKL 92
           GQQIN+EAYTYPV++++LSKLKL
Sbjct: 327 GQQINFEAYTYPVERINLSKLKL 349

[Close]

BLAST of HG10013470 vs. ExPASy TrEMBL
Match: A0A5D3E7N2 (Thylakoid lumenal 29 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G006040 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.3e-36
Identity = 81/83 (97.59%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 9   RQLAVLSAFLGPDQAATEELLASDPEVFPWVQKYQRSRETVSQTDYEVDLITTLTKISSL 68
           RQLAVLSAFLGPDQAATEELLASDP+VFPWVQKYQRSRETVSQTDYEVDLITTLTKISSL
Sbjct: 266 RQLAVLSAFLGPDQAATEELLASDPDVFPWVQKYQRSRETVSQTDYEVDLITTLTKISSL 325

Query: 69  GQQINYEAYTYPVKKVDLSKLKL 92
           GQQINYEAY+YPVKKVDLSKLKL
Sbjct: 326 GQQINYEAYSYPVKKVDLSKLKL 348

[Close]

BLAST of HG10013470 vs. ExPASy TrEMBL
Match: A0A0A0LEM2 (PEROXIDASE_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G889840 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.3e-36
Identity = 81/83 (97.59%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 9   RQLAVLSAFLGPDQAATEELLASDPEVFPWVQKYQRSRETVSQTDYEVDLITTLTKISSL 68
           RQLAVLSAFLGPDQAATEELLASDP+VFPWVQKYQRSRETVSQTDYEVDLITTLTKISSL
Sbjct: 286 RQLAVLSAFLGPDQAATEELLASDPDVFPWVQKYQRSRETVSQTDYEVDLITTLTKISSL 345

Query: 69  GQQINYEAYTYPVKKVDLSKLKL 92
           GQQINYEAY+YPVKKVDLSKLKL
Sbjct: 346 GQQINYEAYSYPVKKVDLSKLKL 368

[Close]

BLAST of HG10013470 vs. ExPASy TrEMBL
Match: A0A6J1BW05 (thylakoid lumenal 29 kDa protein, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006019 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.3e-36
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 9   RQLAVLSAFLGPDQAATEELLASDPEVFPWVQKYQRSRETVSQTDYEVDLITTLTKISSL 68
           RQLAVLSAFLGPDQAATEE LASDP+VFPWVQKYQRSRETVSQTDYEVDLITTLTKISSL
Sbjct: 261 RQLAVLSAFLGPDQAATEEFLASDPDVFPWVQKYQRSRETVSQTDYEVDLITTLTKISSL 320

Query: 69  GQQINYEAYTYPVKKVDLSKLKL 92
           GQQINYEAYTYPVKKVDLSKLKL
Sbjct: 321 GQQINYEAYTYPVKKVDLSKLKL 343

[Close]

BLAST of HG10013470 vs. ExPASy TrEMBL
Match: A0A6J1BWQ6 (thylakoid lumenal 29 kDa protein, chloroplastic isoform X2 OS=Momordica charantia OX=3673 GN=LOC111006019 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.3e-36
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 9   RQLAVLSAFLGPDQAATEELLASDPEVFPWVQKYQRSRETVSQTDYEVDLITTLTKISSL 68
           RQLAVLSAFLGPDQAATEE LASDP+VFPWVQKYQRSRETVSQTDYEVDLITTLTKISSL
Sbjct: 198 RQLAVLSAFLGPDQAATEEFLASDPDVFPWVQKYQRSRETVSQTDYEVDLITTLTKISSL 257

Query: 69  GQQINYEAYTYPVKKVDLSKLKL 92
           GQQINYEAYTYPVKKVDLSKLKL
Sbjct: 258 GQQINYEAYTYPVKKVDLSKLKL 280

[Close]

BLAST of HG10013470 vs. ExPASy TrEMBL
Match: A0A1S3CQP5 (thylakoid lumenal 29 kDa protein, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503691 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.3e-36
Identity = 81/83 (97.59%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 9   RQLAVLSAFLGPDQAATEELLASDPEVFPWVQKYQRSRETVSQTDYEVDLITTLTKISSL 68
           RQLAVLSAFLGPDQAATEELLASDP+VFPWVQKYQRSRETVSQTDYEVDLITTLTKISSL
Sbjct: 198 RQLAVLSAFLGPDQAATEELLASDPDVFPWVQKYQRSRETVSQTDYEVDLITTLTKISSL 257

Query: 69  GQQINYEAYTYPVKKVDLSKLKL 92
           GQQINYEAY+YPVKKVDLSKLKL
Sbjct: 258 GQQINYEAYSYPVKKVDLSKLKL 280

[Close]

BLAST of HG10013470 vs. TAIR 10
Match: AT4G09010.1 (ascorbate peroxidase 4 )

HSP 1 Score: 143.7 bits (361), Expect = 7.5e-35
Identity = 69/83 (83.13%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 9   RQLAVLSAFLGPDQAATEELLASDPEVFPWVQKYQRSRETVSQTDYEVDLITTLTKISSL 68
           RQLAV+SAFLGPDQAATE+LLA+DP+V PWVQKYQRSRETVSQTDYEVDLIT  TK+S L
Sbjct: 267 RQLAVMSAFLGPDQAATEQLLATDPQVAPWVQKYQRSRETVSQTDYEVDLITAFTKLSCL 326

Query: 69  GQQINYEAYTYPVKKVDLSKLKL 92
           GQQIN+EAYTYPV++++LSKLKL
Sbjct: 327 GQQINFEAYTYPVERINLSKLKL 349

The following BLAST results are available for this feature:

BLAST of HG10013470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897501.1	3.7e-36	97.59	thylakoid lumenal 29 kDa protein, chloroplastic isoform X1 [Benincasa hispida]	[more]
XP_038897502.1	3.7e-36	97.59	thylakoid lumenal 29 kDa protein, chloroplastic isoform X2 [Benincasa hispida]	[more]
XP_008466210.1	4.8e-36	97.59	PREDICTED: thylakoid lumenal 29 kDa protein, chloroplastic isoform X1 [Cucumis m...	[more]
XP_004136276.1	4.8e-36	97.59	thylakoid lumenal 29 kDa protein, chloroplastic [Cucumis sativus] >KGN60228.1 hy...	[more]
XP_022133449.1	4.8e-36	97.59	thylakoid lumenal 29 kDa protein, chloroplastic isoform X1 [Momordica charantia]	[more]

BLAST of HG10013470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9THX6	6.2e-34	83.13	Thylakoid lumenal 29 kDa protein, chloroplastic OS=Solanum lycopersicum OX=4081 ...	[more]
P82281	1.0e-33	83.13	Thylakoid lumenal 29 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of HG10013470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E7N2	2.3e-36	97.59	Thylakoid lumenal 29 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A0A0LEM2	2.3e-36	97.59	PEROXIDASE_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G88984...	[more]
A0A6J1BW05	2.3e-36	97.59	thylakoid lumenal 29 kDa protein, chloroplastic isoform X1 OS=Momordica charanti...	[more]
A0A6J1BWQ6	2.3e-36	97.59	thylakoid lumenal 29 kDa protein, chloroplastic isoform X2 OS=Momordica charanti...	[more]
A0A1S3CQP5	2.3e-36	97.59	thylakoid lumenal 29 kDa protein, chloroplastic isoform X2 OS=Cucumis melo OX=36...	[more]

BLAST of HG10013470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09010.1	7.5e-35	83.13	ascorbate peroxidase 4	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.58.1620		coord: 2..56 e-value: 2.4E-27 score: 96.9
None	No IPR available	PANTHER	PTHR31356:SF34	THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC	coord: 6..90
IPR044831	Heme-binding peroxidase Ccp1-like	PANTHER	PTHR31356	THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED	coord: 6..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10013470.1	HG10013470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0034599	cellular response to oxidative stress
biological_process	GO:0042744	hydrogen peroxide catabolic process
biological_process	GO:0000302	response to reactive oxygen species
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0020037	heme binding
molecular_function	GO:0016688	L-ascorbate peroxidase activity
molecular_function	GO:0004601	peroxidase activity