HG10013462 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10013462
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptioncircumsporozoite protein-like
LocationChr02: 1728988 .. 1729533 (+)
RNA-Seq ExpressionHG10013462
SyntenyHG10013462
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAGATCCAGAGACGGCGATTCTGTTCACGGAAGCGCCATTGCCATGGGTTGAGGTCGGCGTAGGAGCCTGTGCTGGAGGAGTTGAGATCGAAGAAGTTGGACCTGGAGTGATCACTGGTGACTTCGAAGGAGCAGTAGGTGGAGCCGGTGGAGAAGTAGCCGGCGCCAAAGCTGGTGGTGAAGTTCCGGTGGAAGGAGAGGGAGCCGCGCCCGATGGAGCAAGGGATGAAGACGGAGTGGAAGCCGGAGGAGTCGCCACTGTGGGTGGAGGAGCCGATTTCGGCGAGGAGGCTGGCGGCGACTTGGTTGGAGAAGAGGCCGGTGCGGCGCCCGGAGCTTGGCCAAGAGAGCCGACGATCAAAGCTAAGAGGACGAAGAAGACAAAGGCGGAGGAGGAAGCCATAGTGGTGAAGAATGCGAAGAGCAGAGAGAGGAAGATGGAAGGGAAGTTTGAGTTGCAGAGGTTGAAGATGAGAGAAAAGGAGGGTTCTACAATGGCTTATACTTATATACTTATAAATATATATTTATATATAATATAA

mRNA sequence

ATGATAGATCCAGAGACGGCGATTCTGTTCACGGAAGCGCCATTGCCATGGGTTGAGGTCGGCGTAGGAGCCTGTGCTGGAGGAGTTGAGATCGAAGAAGTTGGACCTGGAGTGATCACTGGTGACTTCGAAGGAGCAGTAGGTGGAGCCGGTGGAGAAGTAGCCGGCGCCAAAGCTGGTGGTGAAGTTCCGGTGGAAGGAGAGGGAGCCGCGCCCGATGGAGCAAGGGATGAAGACGGAGTGGAAGCCGGAGGAGTCGCCACTGTGGGTGGAGGAGCCGATTTCGGCGAGGAGGCTGGCGGCGACTTGGTTGGAGAAGAGGCCGGTGCGGCGCCCGGAGCTTGGCCAAGAGAGCCGACGATCAAAGCTAAGAGGACGAAGAAGACAAAGGCGGAGGAGGAAGCCATAGTGGTGAAGAATGCGAAGAGCAGAGAGAGGAAGATGGAAGGGAAGTTTGAGTTGCAGAGGTTGAAGATGAGAGAAAAGGAGGGTTCTACAATGGCTTATACTTATATACTTATAAATATATATTTATATATAATATAA

Coding sequence (CDS)

ATGATAGATCCAGAGACGGCGATTCTGTTCACGGAAGCGCCATTGCCATGGGTTGAGGTCGGCGTAGGAGCCTGTGCTGGAGGAGTTGAGATCGAAGAAGTTGGACCTGGAGTGATCACTGGTGACTTCGAAGGAGCAGTAGGTGGAGCCGGTGGAGAAGTAGCCGGCGCCAAAGCTGGTGGTGAAGTTCCGGTGGAAGGAGAGGGAGCCGCGCCCGATGGAGCAAGGGATGAAGACGGAGTGGAAGCCGGAGGAGTCGCCACTGTGGGTGGAGGAGCCGATTTCGGCGAGGAGGCTGGCGGCGACTTGGTTGGAGAAGAGGCCGGTGCGGCGCCCGGAGCTTGGCCAAGAGAGCCGACGATCAAAGCTAAGAGGACGAAGAAGACAAAGGCGGAGGAGGAAGCCATAGTGGTGAAGAATGCGAAGAGCAGAGAGAGGAAGATGGAAGGGAAGTTTGAGTTGCAGAGGTTGAAGATGAGAGAAAAGGAGGGTTCTACAATGGCTTATACTTATATACTTATAAATATATATTTATATATAATATAA

Protein sequence

MIDPETAILFTEAPLPWVEVGVGACAGGVEIEEVGPGVITGDFEGAVGGAGGEVAGAKAGGEVPVEGEGAAPDGARDEDGVEAGGVATVGGGADFGEEAGGDLVGEEAGAAPGAWPREPTIKAKRTKKTKAEEEAIVVKNAKSRERKMEGKFELQRLKMREKEGSTMAYTYILINIYLYII
Homology
BLAST of HG10013462 vs. NCBI nr
Match: KGN60236.1 (hypothetical protein Csa_001434 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 2.8e-43
Identity = 114/148 (77.03%), Postives = 122/148 (82.43%), Query Frame = 0

Query: 1   MIDPETAILFTEAPLPWVEVGVGACAGGVEIEEVGPGVITGDFEGAVGGAGGEVAGAKAG 60
           MIDPETAILFT+APLP V+VG GA AGG E+EE G GVI G+ EGAVGGAGGE AGA AG
Sbjct: 1   MIDPETAILFTKAPLPGVDVGDGASAGGFEMEEDGTGVIIGESEGAVGGAGGEEAGAIAG 60

Query: 61  GEVPVEGEGAAPDGARDEDGVEAGGVATVGGGADFGEEAGGDLVGEEAGAAPGAWPREPT 120
           GEV V+G GA PDGAR ED    GGVATVGGGAD GEEAG DLVGEEAGAAPGAWPRE  
Sbjct: 61  GEVAVKGAGATPDGARGEDD---GGVATVGGGADLGEEAGDDLVGEEAGAAPGAWPREAA 120

Query: 121 IKAKRTKKTKAEEEAIVV-KNAKSRERK 148
           IKAKRT KTKAEEEA+VV KN K RE++
Sbjct: 121 IKAKRTTKTKAEEEAMVVKKNGKRREKR 145

BLAST of HG10013462 vs. NCBI nr
Match: XP_022136125.1 (circumsporozoite protein-like [Momordica charantia])

HSP 1 Score: 167.9 bits (424), Expect = 7.9e-38
Identity = 105/154 (68.18%), Postives = 114/154 (74.03%), Query Frame = 0

Query: 1   MIDPETAILFTEAPLPWVEVGVGACAGGVEIEEVGPGVITGDFEGAVGGAGGEVAGAKAG 60
           MIDP  A LF  APLP VE G GAC GG  IE  G GV  G+ EGAVGGAGGE AGA+AG
Sbjct: 1   MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVSGVGVDAGESEGAVGGAGGEEAGAEAG 60

Query: 61  GEVPVEGEGAAPDGARDEDGVEAGGVATVGGGADFGEEAGGDLVGEEAGAAPGAWPREPT 120
           GEVPVEG G  P GA DEDGV+AGGVAT  GGA FG++AGG LVGEEAGAAPGAWP+EP 
Sbjct: 61  GEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAGGGLVGEEAGAAPGAWPKEPA 120

Query: 121 IKAKRTKKTKAEEEAIVVKNAKSRE----RKMEG 151
            KA  TK TKA EEA+ VKNA+ RE    R+ EG
Sbjct: 121 TKANSTKNTKA-EEAMAVKNAQRREENGRRRSEG 153

BLAST of HG10013462 vs. NCBI nr
Match: XP_023520820.1 (uncharacterized protein LOC111784314 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-05
Identity = 44/88 (50.00%), Postives = 50/88 (56.82%), Query Frame = 0

Query: 1  MIDPETAILFTEAPLPWVEVGVGACAGGVEIEEVGPGVITGDFEGAVGGAGGEVAGAKAG 60
          MID ET+ILFT  PLP VE G                      +GAV  A GE+ GA A 
Sbjct: 1  MIDLETSILFTAPPLPGVEAG----------------------DGAVVEARGEIVGAIAS 60

Query: 61 GEVPVEGEGAAPDGARDEDGVEAGGVAT 89
          GEVP++ EG  P GARD+DGVEAG VAT
Sbjct: 61 GEVPIDEEGGTPLGARDKDGVEAGRVAT 66

BLAST of HG10013462 vs. NCBI nr
Match: KAF5444827.1 (hypothetical protein F2P56_033926 [Juglans regia])

HSP 1 Score: 59.7 bits (143), Expect = 3.0e-05
Identity = 61/115 (53.04%), Postives = 65/115 (56.52%), Query Frame = 0

Query: 3   DPETAILFTEAPLPWVEVGVGACAGGVEIEEVGP-GVITGDFEGA--VGGAGGEVAGAKA 62
           DP   ILFT APLP  E  VG   GG+ IE VG  G + G F G   V GAGGE+AGA A
Sbjct: 6   DPVVVILFTAAPLPPGE-PVGDSVGGLPIEVVGTVGELVGTFAGGDDVRGAGGELAGALA 65

Query: 63  GGEVPVEGEGAAPDGARDEDGVEAGGVATVGGGADFGEEAGGDLVGEEAGAAPGA 115
           G  V V   GA  +   D  G E  GV   GGG   GEEAGGDLV    GAAPGA
Sbjct: 66  GALVVV---GAGAEAGGDMVG-EDVGVKVRGGGEAVGEEAGGDLV----GAAPGA 111

BLAST of HG10013462 vs. ExPASy TrEMBL
Match: A0A0A0LJM1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889920 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.4e-43
Identity = 114/148 (77.03%), Postives = 122/148 (82.43%), Query Frame = 0

Query: 1   MIDPETAILFTEAPLPWVEVGVGACAGGVEIEEVGPGVITGDFEGAVGGAGGEVAGAKAG 60
           MIDPETAILFT+APLP V+VG GA AGG E+EE G GVI G+ EGAVGGAGGE AGA AG
Sbjct: 1   MIDPETAILFTKAPLPGVDVGDGASAGGFEMEEDGTGVIIGESEGAVGGAGGEEAGAIAG 60

Query: 61  GEVPVEGEGAAPDGARDEDGVEAGGVATVGGGADFGEEAGGDLVGEEAGAAPGAWPREPT 120
           GEV V+G GA PDGAR ED    GGVATVGGGAD GEEAG DLVGEEAGAAPGAWPRE  
Sbjct: 61  GEVAVKGAGATPDGARGEDD---GGVATVGGGADLGEEAGDDLVGEEAGAAPGAWPREAA 120

Query: 121 IKAKRTKKTKAEEEAIVV-KNAKSRERK 148
           IKAKRT KTKAEEEA+VV KN K RE++
Sbjct: 121 IKAKRTTKTKAEEEAMVVKKNGKRREKR 145

BLAST of HG10013462 vs. ExPASy TrEMBL
Match: A0A6J1C301 (circumsporozoite protein-like OS=Momordica charantia OX=3673 GN=LOC111007891 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 3.8e-38
Identity = 105/154 (68.18%), Postives = 114/154 (74.03%), Query Frame = 0

Query: 1   MIDPETAILFTEAPLPWVEVGVGACAGGVEIEEVGPGVITGDFEGAVGGAGGEVAGAKAG 60
           MIDP  A LF  APLP VE G GAC GG  IE  G GV  G+ EGAVGGAGGE AGA+AG
Sbjct: 1   MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVSGVGVDAGESEGAVGGAGGEEAGAEAG 60

Query: 61  GEVPVEGEGAAPDGARDEDGVEAGGVATVGGGADFGEEAGGDLVGEEAGAAPGAWPREPT 120
           GEVPVEG G  P GA DEDGV+AGGVAT  GGA FG++AGG LVGEEAGAAPGAWP+EP 
Sbjct: 61  GEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAGGGLVGEEAGAAPGAWPKEPA 120

Query: 121 IKAKRTKKTKAEEEAIVVKNAKSRE----RKMEG 151
            KA  TK TKA EEA+ VKNA+ RE    R+ EG
Sbjct: 121 TKANSTKNTKA-EEAMAVKNAQRREENGRRRSEG 153

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN60236.12.8e-4377.03hypothetical protein Csa_001434 [Cucumis sativus][more]
XP_022136125.17.9e-3868.18circumsporozoite protein-like [Momordica charantia][more]
XP_023520820.11.8e-0550.00uncharacterized protein LOC111784314 [Cucurbita pepo subsp. pepo][more]
KAF5444827.13.0e-0553.04hypothetical protein F2P56_033926 [Juglans regia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LJM11.4e-4377.03Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889920 PE=4 SV=1[more]
A0A6J1C3013.8e-3868.18circumsporozoite protein-like OS=Momordica charantia OX=3673 GN=LOC111007891 PE=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..101

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10013462.1HG10013462.1mRNA