HG10013460 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10013460
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	28 kDa ribonucleoprotein, chloroplastic-like
Location	Chr02: 1719532 .. 1721158 (+)
RNA-Seq Expression	HG10013460
Synteny	HG10013460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTGGTTCGTCTTCCTTGTTCTTCGTCTTCCTCATTCCTCCGCTCTAAACAACACCACCTGATTTTTCTGGCGCCTCTCTCATGTCCGCAAAACCCAACTTATCCCATCAATGGCGACTTCAATCTCTCTATTTCTCGCTCTTCTCCCTCTCTTCGTTCAACTTCCATCAGCCACAATCCTTTAATTTCAATTAGAGCTAAGAGAACCAGCAAGTTTGTTTTCCAGTTCGCATCAACCTCCCAAGACGAAGCAGTTGCGAGCTCGCCTTCTGATACTGAAGAATTTTCTCGAACTAGATTGCTTGCTCAAAATGTGCCTTGGAATTCTACTCCTGAGGACATTCGTTCTCTGTTTGAGAAATTTGGTACTGTCCTGGACGTGGAGGTATGCAACTCTAGCTTATTTCAGTGTAAAAACATTTCTCTTGCCATTTCTGATTGACGGTTTTGGTTTATTGCAAATTGATGATCGGTCTCTTTCTCTCAGCTTTCTATGTATAACAAGATCAGAAACAGGGGCTTGGCGTTTGTCACTATGGGATCACCGGAGGAGGCCCTTGCTGCGCTTAGCAATCTCGAATCGTATGTAAGCAGGATCATGTTTTTCTTAATTAGAATATTTTCAATTGTCTTATTGTGTTCAATTTCGTCATTGAGGCTTAATACAATGTTTACCCTTCATGATGGAAGAATACTCGTGATAGGAATTGAATGCGTTTTGACTTTTAGGAGTAGTTTGATTTGCTTGTGTTTGATCCAAAAACTGATGAAGCAGAAAAACTAAACTAAAAACTTGATCCTGCTTGTGTCTAGTGTGTTGCAGCTGCATTTCATTTTTGCTTCTTCTATGCTTTTGAATAAATTATTATGAGGGAACCAGTTGTTGACTAAAAATTCAGTTCACCTTGTTACTTTTGGTTGAAGCAAAGTATATGGTTTTTCAATTCATTTCAAAACTTAGATGATCCCTTCCCGTATCAAACATGAATCTTCTGATTCATTTTGCCTCTCACTCCCAATTATTGCAATTGTTTCTGAGAAATTCCCATTTTTCATTTTGAACTCTTGTTGGCTTTATTGAAATGGTTCACCTAAATGCAGGAATTTGAGGGTCGGACTCTGAGGCTCAATTATGCCAAGCTTAAAAAAGAGAAACCCTCCCCTCCTGTGAAACCAAAACCCGTTACTTTTAATTTGTTCGTGGCAAATTTGCCATTTGAAGCAAGAGCAAAGGACCTCAGGGAGTTTTTTGATTCAGGGAGTGGTAATGTAGTTTCTGCACAAATTATTTTTCATGAGAATCCTAGAAGGTCTTCTGGATATGGTTTTGTTGCCTTCAAAACCAAGAGGGATGCTGAAACAGCTATTTCCGAGTTCCAAGGGAAGGTAATTTCAGTATTGTTACTACCTCTTTTATTAAATGAATAGCCATAGAATCATTGAAATGTGAATATCAGCATTCTTATGGTGCTTCATCTGCTGAAATGCAGATTTTCATGGGGAGATCACTTCGTGTTGCACGTAGTAAGCAGTTTGTGAAACTTCCCTCAGAAGAGAATTCCCAATCTGAAGATACATCAACTGATGGTGTGGAGCTAGCCAATGCCGCTGCTGAAGTTTAA

mRNA sequence

ATGGCTCTGGTTCGTCTTCCTTGTTCTTCGTCTTCCTCATTCCTCCGCTCTAAACAACACCACCTGATTTTTCTGGCGCCTCTCTCATGTCCGCAAAACCCAACTTATCCCATCAATGGCGACTTCAATCTCTCTATTTCTCGCTCTTCTCCCTCTCTTCGTTCAACTTCCATCAGCCACAATCCTTTAATTTCAATTAGAGCTAAGAGAACCAGCAAGTTTGTTTTCCAGTTCGCATCAACCTCCCAAGACGAAGCAGTTGCGAGCTCGCCTTCTGATACTGAAGAATTTTCTCGAACTAGATTGCTTGCTCAAAATGTGCCTTGGAATTCTACTCCTGAGGACATTCGTTCTCTGTTTGAGAAATTTGGTACTGTCCTGGACGTGGAGCTTTCTATGTATAACAAGATCAGAAACAGGGGCTTGGCGTTTGTCACTATGGGATCACCGGAGGAGGCCCTTGCTGCGCTTAGCAATCTCGAATCGTATGAATTTGAGGGTCGGACTCTGAGGCTCAATTATGCCAAGCTTAAAAAAGAGAAACCCTCCCCTCCTGTGAAACCAAAACCCGTTACTTTTAATTTGTTCGTGGCAAATTTGCCATTTGAAGCAAGAGCAAAGGACCTCAGGGAGTTTTTTGATTCAGGGAGTGGTAATGTAGTTTCTGCACAAATTATTTTTCATGAGAATCCTAGAAGGTCTTCTGGATATGGTTTTGTTGCCTTCAAAACCAAGAGGGATGCTGAAACAGCTATTTCCGAGTTCCAAGGGAAGCATTCTTATGGTGCTTCATCTGCTGAAATGCAGATTTTCATGGGGAGATCACTTCGTGTTGCACGTAGTAAGCAGTTTGTGAAACTTCCCTCAGAAGAGAATTCCCAATCTGAAGATACATCAACTGATGGTGTGGAGCTAGCCAATGCCGCTGCTGAAGTTTAA

Coding sequence (CDS)

ATGGCTCTGGTTCGTCTTCCTTGTTCTTCGTCTTCCTCATTCCTCCGCTCTAAACAACACCACCTGATTTTTCTGGCGCCTCTCTCATGTCCGCAAAACCCAACTTATCCCATCAATGGCGACTTCAATCTCTCTATTTCTCGCTCTTCTCCCTCTCTTCGTTCAACTTCCATCAGCCACAATCCTTTAATTTCAATTAGAGCTAAGAGAACCAGCAAGTTTGTTTTCCAGTTCGCATCAACCTCCCAAGACGAAGCAGTTGCGAGCTCGCCTTCTGATACTGAAGAATTTTCTCGAACTAGATTGCTTGCTCAAAATGTGCCTTGGAATTCTACTCCTGAGGACATTCGTTCTCTGTTTGAGAAATTTGGTACTGTCCTGGACGTGGAGCTTTCTATGTATAACAAGATCAGAAACAGGGGCTTGGCGTTTGTCACTATGGGATCACCGGAGGAGGCCCTTGCTGCGCTTAGCAATCTCGAATCGTATGAATTTGAGGGTCGGACTCTGAGGCTCAATTATGCCAAGCTTAAAAAAGAGAAACCCTCCCCTCCTGTGAAACCAAAACCCGTTACTTTTAATTTGTTCGTGGCAAATTTGCCATTTGAAGCAAGAGCAAAGGACCTCAGGGAGTTTTTTGATTCAGGGAGTGGTAATGTAGTTTCTGCACAAATTATTTTTCATGAGAATCCTAGAAGGTCTTCTGGATATGGTTTTGTTGCCTTCAAAACCAAGAGGGATGCTGAAACAGCTATTTCCGAGTTCCAAGGGAAGCATTCTTATGGTGCTTCATCTGCTGAAATGCAGATTTTCATGGGGAGATCACTTCGTGTTGCACGTAGTAAGCAGTTTGTGAAACTTCCCTCAGAAGAGAATTCCCAATCTGAAGATACATCAACTGATGGTGTGGAGCTAGCCAATGCCGCTGCTGAAGTTTAA

Protein sequence

MALVRLPCSSSSSFLRSKQHHLIFLAPLSCPQNPTYPINGDFNLSISRSSPSLRSTSISHNPLISIRAKRTSKFVFQFASTSQDEAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLFEKFGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALSNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKRDAETAISEFQGKHSYGASSAEMQIFMGRSLRVARSKQFVKLPSEENSQSEDTSTDGVELANAAAEV

Homology

[Close]

BLAST of HG10013460 vs. NCBI nr
Match: XP_038897887.1 (31 kDa ribonucleoprotein, chloroplastic [Benincasa hispida])

HSP 1 Score: 545.0 bits (1403), Expect = 4.1e-151
Identity = 286/312 (91.67%), Postives = 293/312 (93.91%), Query Frame = 0


Query: 1   MALVRLPCSSSSSFLRSKQHHLIFLAPLSCPQNPTYPINGDFNLSISRSSPSLRSTSISH 60
           MALVRLPCSSSSSFLRSKQ HLIFLAPLSCPQNP+YPINGDFNLSISRSSPSL STSI H
Sbjct: 1   MALVRLPCSSSSSFLRSKQQHLIFLAPLSCPQNPSYPINGDFNLSISRSSPSLLSTSIGH 60

Query: 61  NPLISIRAKRTSKFVFQFASTSQDEAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLF 120
           NPLISIR KRTSKFVFQFASTSQDEAVASSPSD+EEFS+TRLLAQNVPW+STPEDIRSLF
Sbjct: 61  NPLISIRGKRTSKFVFQFASTSQDEAVASSPSDSEEFSQTRLLAQNVPWSSTPEDIRSLF 120

Query: 121 EKFGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALSNLESYEFEGRTLRLNYAKLKKE 180
           EK+GTVLDVELSMYNKIRNRGLAFVTMGSPEEALAAL+NLESYEFEGRTLRLNYAKLKKE
Sbjct: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKRDAETAISEFQGKHSYGASSAEMQIFMGRSLRVARSKQFVKLPSEENSQSEDTST 300
           AFKTK+DAE AISEFQGK           IFMGRSLRVARSKQFVKLPSEE SQSED ST
Sbjct: 241 AFKTKKDAEAAISEFQGK-----------IFMGRSLRVARSKQFVKLPSEEKSQSEDAST 300

Query: 301 DGVELANAAAEV 313
           D VELANAAAEV
Sbjct: 301 DDVELANAAAEV 301

[Close]

BLAST of HG10013460 vs. NCBI nr
Match: XP_008466190.1 (PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >KAA0038685.1 31 kDa ribonucleoprotein [Cucumis melo var. makuwa] >TYK31295.1 31 kDa ribonucleoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 534.6 bits (1376), Expect = 5.5e-148
Identity = 281/312 (90.06%), Postives = 288/312 (92.31%), Query Frame = 0


Query: 1   MALVRLPCSSSSSFLRSKQHHLIFLAPLSCPQNPTYPINGDFNLSISRSSPSLRSTSISH 60
           MA VRLPCSSSSS LRSKQHH IFLAPLSC QNP+YPINGDFNLS+SRSSPSL STSI H
Sbjct: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60

Query: 61  NPLISIRAKRTSKFVFQFASTSQDEAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLF 120
           NPLISI AKRTSKFVFQFASTSQDEAV+SSPSD EEFSRTRLLAQNVPW+STPEDIRSLF
Sbjct: 61  NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKFGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALSNLESYEFEGRTLRLNYAKLKKE 180
           EK+GTVLDVELSMYNKIRNRGLAFVTMGSPEEALAAL+NLESYEFEGRTLRLNYAKLKKE
Sbjct: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKRDAETAISEFQGKHSYGASSAEMQIFMGRSLRVARSKQFVKLPSEENSQSEDTST 300
           AFK K+DAE AISEFQGK            FMGRSLRVARSKQFVKLPSEE SQSED ST
Sbjct: 241 AFKAKKDAEAAISEFQGK-----------TFMGRSLRVARSKQFVKLPSEEKSQSEDAST 300

Query: 301 DGVELANAAAEV 313
           DGVELANAAAEV
Sbjct: 301 DGVELANAAAEV 301

[Close]

BLAST of HG10013460 vs. NCBI nr
Match: XP_004136268.1 (28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN60238.1 hypothetical protein Csa_002107 [Cucumis sativus])

HSP 1 Score: 524.2 bits (1349), Expect = 7.5e-145
Identity = 278/312 (89.10%), Postives = 288/312 (92.31%), Query Frame = 0


Query: 1   MALVRLPCSSSSSFLRSKQHHLIFLAPLSCPQNPTYPINGDFNLSISRSSPSLRSTSISH 60
           MA VRLPCSSSSS LRSK HH IFLAPLSC QNP+YPINGDFNLSISRSSPSL STSISH
Sbjct: 1   MASVRLPCSSSSSILRSKHHHQIFLAPLSCSQNPSYPINGDFNLSISRSSPSLLSTSISH 60

Query: 61  NPLISIRAKRTSKFVFQFASTSQDEAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLF 120
           +PLISIRAKRTS FVFQFASTSQDEAV SSPSDTEEFS+TRLLAQNVPW+STPEDIRSLF
Sbjct: 61  SPLISIRAKRTSTFVFQFASTSQDEAV-SSPSDTEEFSQTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKFGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALSNLESYEFEGRTLRLNYAKLKKE 180
           EK+GTVLDVELSMYNKIRNRGLAFVTMGSPEEALAAL+NLESYEFEGRTLRLNYAKLKKE
Sbjct: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKPKPVTFNLFVANLPF+ARAKDL+EFFDSGSGNVVSAQIIF+ENPRRSSGYGFV
Sbjct: 181 KPSPPVKPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFV 240

Query: 241 AFKTKRDAETAISEFQGKHSYGASSAEMQIFMGRSLRVARSKQFVKLPSEENSQSEDTST 300
           AFKTK+DAE AISEFQGK            FMGRSLRVARSKQFVKLPSEE  QSED ST
Sbjct: 241 AFKTKKDAEAAISEFQGK-----------TFMGRSLRVARSKQFVKLPSEEKPQSEDAST 300

Query: 301 DGVELANAAAEV 313
           DGVELANAAAEV
Sbjct: 301 DGVELANAAAEV 300

[Close]

BLAST of HG10013460 vs. NCBI nr
Match: XP_023535968.1 (28 kDa ribonucleoprotein, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 500.4 bits (1287), Expect = 1.2e-137
Identity = 261/312 (83.65%), Postives = 280/312 (89.74%), Query Frame = 0


Query: 1   MALVRLPCSSSSSFLRSKQHHLIFLAPLSCPQNPTYPINGDFNLSISRSSPSLRSTSISH 60
           MALVRLPCSSSS FLRS Q +L+F++PLSCPQNP+Y  NGD  LS+SRSS SL ST + H
Sbjct: 1   MALVRLPCSSSSLFLRSNQQNLVFISPLSCPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60

Query: 61  NPLISIRAKRTSKFVFQFASTSQDEAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLF 120
           NPL SIRAKRT KFVFQ ASTSQD+AVASS SD EEFSR RLLAQNVPWNSTPEDIRSLF
Sbjct: 61  NPLTSIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWNSTPEDIRSLF 120

Query: 121 EKFGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALSNLESYEFEGRTLRLNYAKLKKE 180
           EK+GTV+DVELSMYNKIRNRGLAFVTMGSPEEALAA++NLESYEF GRTL+LNYAK+KKE
Sbjct: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKP PVTFNLFVANLPF+ARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKRDAETAISEFQGKHSYGASSAEMQIFMGRSLRVARSKQFVKLPSEENSQSEDTST 300
           AFKTK+DAE AISEFQGK+           FMGRSLRVARSKQFVKLPSEE SQSEDTST
Sbjct: 241 AFKTKKDAEAAISEFQGKN-----------FMGRSLRVARSKQFVKLPSEEKSQSEDTST 300

Query: 301 DGVELANAAAEV 313
           +GVELA+AAAEV
Sbjct: 301 EGVELASAAAEV 301

[Close]

BLAST of HG10013460 vs. NCBI nr
Match: XP_022937168.1 (28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata] >KAG6591682.1 RNA-binding protein CP33, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 500.0 bits (1286), Expect = 1.5e-137
Identity = 261/312 (83.65%), Postives = 280/312 (89.74%), Query Frame = 0


Query: 1   MALVRLPCSSSSSFLRSKQHHLIFLAPLSCPQNPTYPINGDFNLSISRSSPSLRSTSISH 60
           MALVRLPCSSSS FLRS Q +L+F++PLSCPQNP+Y  NGD  LS+SRSS SL ST + H
Sbjct: 1   MALVRLPCSSSSLFLRSNQQNLVFISPLSCPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60

Query: 61  NPLISIRAKRTSKFVFQFASTSQDEAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLF 120
           NPL SIRAKRT KFVFQ ASTSQD+AVASS SD EEFSR RLLAQNVPW+STPEDIRSLF
Sbjct: 61  NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKFGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALSNLESYEFEGRTLRLNYAKLKKE 180
           EK+GTV+DVELSMYNKIRNRGLAFVTMGSPEEALAA++NLESYEF GRTL+LNYAK+KKE
Sbjct: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKP PVTFNLFVANLPF+ARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKRDAETAISEFQGKHSYGASSAEMQIFMGRSLRVARSKQFVKLPSEENSQSEDTST 300
           AFKTK+DAE AISEFQGK+           FMGRSLRVARSKQFVKLPSEE SQSEDTST
Sbjct: 241 AFKTKKDAEAAISEFQGKN-----------FMGRSLRVARSKQFVKLPSEEKSQSEDTST 300

Query: 301 DGVELANAAAEV 313
           DGVELA+AAAEV
Sbjct: 301 DGVELASAAAEV 301

[Close]

BLAST of HG10013460 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.8e-17
Identity = 84/314 (26.75%), Postives = 149/314 (47.45%), Query Frame = 0


Query: 33  NPTYPINGDFNLSISRSSPSLRSTSISHNPLI---SIRAKRTSKFVFQFASTSQDEAVAS 92
           NP    + +  L    +  S +  +   NPLI   +IR  R        AS++ DE  AS
Sbjct: 25  NPLLSSHSNSQLFYRFTPKSFKLVANCPNPLILHSNIRRHRFFCAAETEASSADDEIQAS 84

Query: 93  -------------SPSDTEEFSRT--------RLLAQNVPWNSTPEDIRSLFEKFGTVLD 152
                           + EE  +T        RL   N+P+  T  ++  +F + GTV+D
Sbjct: 85  VEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVD 144

Query: 153 VELSMYNKI--RNRGLAFVTMGSPEEALAALSNLESYEFEGRTLRLNYAKLKKEKPSPPV 212
           V++ +Y+K+  R+RG  FVTMGS EEA  A+    S +  GRT+++N+ ++ +   +  +
Sbjct: 145 VQI-VYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVM 204

Query: 213 KPKPVTFN---------LFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGY 272
           + K    N         ++  NL +   ++ L++ F    G V+ A++I+  N  RS G+
Sbjct: 205 RTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPG-VLGAKVIYERNTGRSRGF 264

Query: 273 GFVAFKTKRDAETAISEFQGKHSYGASSAEMQIFMGRSLRVARSKQFVKLPSEENSQSED 311
           GF++F++  + ++A++   G    G +       +  +L   R K  V  PS E  ++E+
Sbjct: 265 GFISFESAENVQSALATMNGVEVEGRA-------LRLNLASEREKPTVSPPSVEEGETEE 324

[Close]

BLAST of HG10013460 vs. ExPASy Swiss-Prot
Match: P28644 (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.9e-14
Identity = 52/179 (29.05%), Postives = 88/179 (49.16%), Query Frame = 0


Query: 82  SQDEAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLFEKFGTVLDVELSMYNK--IRN 141
           S +  V      +E     +L   N+P++   E +  +F+  G V+++   +YN+   R+
Sbjct: 37  SDEGGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAG-VVEIAEVIYNRETDRS 96

Query: 142 RGLAFVTMGSPEEALAALSNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVAN 201
           RG  FVTM + EEA  A+  L  Y+ +GR L +N A  +      P      +  ++V N
Sbjct: 97  RGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGN 156

Query: 202 LPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKRDAETAISEFQGK 259
           LP++     L + F S  G VVSA+++      RS G+GFV   ++ +   AI+   G+
Sbjct: 157 LPWDVDTSRLEQLF-SEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQ 213

[Close]

BLAST of HG10013460 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.9e-14
Identity = 84/291 (28.87%), Postives = 141/291 (48.45%), Query Frame = 0


Query: 53  LRSTSI-SHNPLISIRAKRTSKFVFQFASTS---------QDEAVASSPSDTEEFSRT-- 112
           + ST + +H P+ S+   R+S F+   AS S          +E VA S  + EE      
Sbjct: 47  INSTKLKAHFPISSL--YRSSIFLSTCASVSDGVEVVQEDDEEEVALSAEEEEEIEEKEE 106

Query: 113 ----------RLLAQNVPWNSTPEDIRSLFEKFGTVLDVELSMYNKI--RNRGLAFVTMG 172
                     RL   N+P++ T   +  +F + GTV +VE+ +Y+++  R+RG AFVTMG
Sbjct: 107 RVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEI-VYDRVTDRSRGFAFVTMG 166

Query: 173 SPEEALAALSNLESYEFEGRTLRLNYAKL----KKEKPSPPVKPKPVTF-----NLFVAN 232
           S EEA  A+   +  +  GRT+++N+ ++    ++E  S  ++     F      L+VAN
Sbjct: 167 SVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVAN 226

Query: 233 LPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKRDAETAISEFQGKH 292
           L +   ++ LR+ F    G  +SA++I+  +  RS G+GF+ F +     +A+       
Sbjct: 227 LSWALTSQGLRDAFADQPG-FMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTM---- 286

Query: 293 SYGASSAEMQIFMGRSLR--VARSKQFVKLPSEENSQSEDTSTDGVELANA 309
               +  E++   GR LR  VA  K  V  P    +  E+ S D  EL ++
Sbjct: 287 ----NEVELE---GRPLRLNVAGQKAPVSSPPVVETSPENDS-DNSELLSS 321

[Close]

BLAST of HG10013460 vs. ExPASy Swiss-Prot
Match: Q9ZUU4 (RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29B PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.4e-14
Identity = 74/249 (29.72%), Postives = 106/249 (42.57%), Query Frame = 0


Query: 45  SISRSSPSLRSTSISHNPLISIRAK---RTSKFVFQFASTSQDE------AVASSPSDTE 104
           S+S  SPSL     S +   SI AK     S+F    A TS+ E      A  + P +  
Sbjct: 27  SVSLLSPSLSFKLNSDSVSFSIAAKWNSPASRFARNVAITSEFEVEEDGFADVAPPKEQS 86

Query: 105 EFSRTRLLAQNVPWNSTPEDIRSLFEKFGTVLDVELSMYNKI--RNRGLAFVTMGSPEEA 164
             +  +L   N+P+N     +  LFE  G V  VE+ +Y+KI  R+RG  FVTM S  E 
Sbjct: 87  FSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEV-IYDKITGRSRGFGFVTMSSVSEV 146

Query: 165 LAALSNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVT--------------------- 224
            AA      YE +GR LR+N        P PP +    +                     
Sbjct: 147 EAAAQQFNGYELDGRPLRVNAG------PPPPKREDGFSRGPRSSFGSSGSGYGGGGGSG 206

Query: 225 ----FNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKRDA 258
                 ++V NL +      L   F S  G VV A++I+  +  RS G+GFV + + ++ 
Sbjct: 207 AGSGNRVYVGNLSWGVDDMALESLF-SEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEV 266

[Close]

BLAST of HG10013460 vs. ExPASy Swiss-Prot
Match: P49314 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.4e-13
Identity = 76/272 (27.94%), Postives = 121/272 (44.49%), Query Frame = 0


Query: 42  FNLSISRSSPSLRSTSISHNPLIS--IRAKRTSKFVFQFASTSQDEAVASSPSDTEEFSR 101
           F+L  S  + SL S+SI H+  I     +  T   +  F     D  VA  P  +E+   
Sbjct: 31  FSLPSSSLNLSLSSSSIGHSASIKPFESSFSTRVALSDFDQLEDDVEVAEQPRFSEDL-- 90

Query: 102 TRLLAQNVPWNSTPEDIRSLFEKFGTVLDVELSMYNKI--RNRGLAFVTMGSPEEALAAL 161
            +L   N+P++     +  LFE+ G V  VE+ +Y+K+  R+RG  FVTM + EE  AA 
Sbjct: 91  -KLFVGNLPFSVDSAALAGLFERAGNVEIVEV-IYDKLSGRSRGFGFVTMSTKEEVEAAE 150

Query: 162 SNLESYEFEGRTLRLNY--AKLKKEKPS------------------------PPVKPKPV 221
                YE +GR +R+N   A  K+E  S                           +    
Sbjct: 151 QQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDS 210

Query: 222 TFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKRDAETA 281
           +  ++V NL +      L+E F S  GNVV A++++  +  RS G+GFV + + ++   A
Sbjct: 211 SNRVYVGNLSWGVDDLALKELF-SEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDA 270

Query: 282 ISEFQGKHSYGASSAEMQIFMGRSLRVARSKQ 284
           I    G               GRS+RV+ +++
Sbjct: 271 IDSLNGID-----------LDGRSIRVSAAEE 286

[Close]

BLAST of HG10013460 vs. ExPASy TrEMBL
Match: A0A5A7TBD1 (31 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005930 PE=4 SV=1)

HSP 1 Score: 534.6 bits (1376), Expect = 2.7e-148
Identity = 281/312 (90.06%), Postives = 288/312 (92.31%), Query Frame = 0


Query: 1   MALVRLPCSSSSSFLRSKQHHLIFLAPLSCPQNPTYPINGDFNLSISRSSPSLRSTSISH 60
           MA VRLPCSSSSS LRSKQHH IFLAPLSC QNP+YPINGDFNLS+SRSSPSL STSI H
Sbjct: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60

Query: 61  NPLISIRAKRTSKFVFQFASTSQDEAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLF 120
           NPLISI AKRTSKFVFQFASTSQDEAV+SSPSD EEFSRTRLLAQNVPW+STPEDIRSLF
Sbjct: 61  NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKFGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALSNLESYEFEGRTLRLNYAKLKKE 180
           EK+GTVLDVELSMYNKIRNRGLAFVTMGSPEEALAAL+NLESYEFEGRTLRLNYAKLKKE
Sbjct: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKRDAETAISEFQGKHSYGASSAEMQIFMGRSLRVARSKQFVKLPSEENSQSEDTST 300
           AFK K+DAE AISEFQGK            FMGRSLRVARSKQFVKLPSEE SQSED ST
Sbjct: 241 AFKAKKDAEAAISEFQGK-----------TFMGRSLRVARSKQFVKLPSEEKSQSEDAST 300

Query: 301 DGVELANAAAEV 313
           DGVELANAAAEV
Sbjct: 301 DGVELANAAAEV 301

[Close]

BLAST of HG10013460 vs. ExPASy TrEMBL
Match: A0A1S3CS17 (31 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503681 PE=4 SV=1)

HSP 1 Score: 534.6 bits (1376), Expect = 2.7e-148
Identity = 281/312 (90.06%), Postives = 288/312 (92.31%), Query Frame = 0


Query: 1   MALVRLPCSSSSSFLRSKQHHLIFLAPLSCPQNPTYPINGDFNLSISRSSPSLRSTSISH 60
           MA VRLPCSSSSS LRSKQHH IFLAPLSC QNP+YPINGDFNLS+SRSSPSL STSI H
Sbjct: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60

Query: 61  NPLISIRAKRTSKFVFQFASTSQDEAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLF 120
           NPLISI AKRTSKFVFQFASTSQDEAV+SSPSD EEFSRTRLLAQNVPW+STPEDIRSLF
Sbjct: 61  NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKFGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALSNLESYEFEGRTLRLNYAKLKKE 180
           EK+GTVLDVELSMYNKIRNRGLAFVTMGSPEEALAAL+NLESYEFEGRTLRLNYAKLKKE
Sbjct: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKRDAETAISEFQGKHSYGASSAEMQIFMGRSLRVARSKQFVKLPSEENSQSEDTST 300
           AFK K+DAE AISEFQGK            FMGRSLRVARSKQFVKLPSEE SQSED ST
Sbjct: 241 AFKAKKDAEAAISEFQGK-----------TFMGRSLRVARSKQFVKLPSEEKSQSEDAST 300

Query: 301 DGVELANAAAEV 313
           DGVELANAAAEV
Sbjct: 301 DGVELANAAAEV 301

[Close]

BLAST of HG10013460 vs. ExPASy TrEMBL
Match: A0A0A0LEN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889940 PE=4 SV=1)

HSP 1 Score: 524.2 bits (1349), Expect = 3.6e-145
Identity = 278/312 (89.10%), Postives = 288/312 (92.31%), Query Frame = 0


Query: 1   MALVRLPCSSSSSFLRSKQHHLIFLAPLSCPQNPTYPINGDFNLSISRSSPSLRSTSISH 60
           MA VRLPCSSSSS LRSK HH IFLAPLSC QNP+YPINGDFNLSISRSSPSL STSISH
Sbjct: 1   MASVRLPCSSSSSILRSKHHHQIFLAPLSCSQNPSYPINGDFNLSISRSSPSLLSTSISH 60

Query: 61  NPLISIRAKRTSKFVFQFASTSQDEAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLF 120
           +PLISIRAKRTS FVFQFASTSQDEAV SSPSDTEEFS+TRLLAQNVPW+STPEDIRSLF
Sbjct: 61  SPLISIRAKRTSTFVFQFASTSQDEAV-SSPSDTEEFSQTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKFGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALSNLESYEFEGRTLRLNYAKLKKE 180
           EK+GTVLDVELSMYNKIRNRGLAFVTMGSPEEALAAL+NLESYEFEGRTLRLNYAKLKKE
Sbjct: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKPKPVTFNLFVANLPF+ARAKDL+EFFDSGSGNVVSAQIIF+ENPRRSSGYGFV
Sbjct: 181 KPSPPVKPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFV 240

Query: 241 AFKTKRDAETAISEFQGKHSYGASSAEMQIFMGRSLRVARSKQFVKLPSEENSQSEDTST 300
           AFKTK+DAE AISEFQGK            FMGRSLRVARSKQFVKLPSEE  QSED ST
Sbjct: 241 AFKTKKDAEAAISEFQGK-----------TFMGRSLRVARSKQFVKLPSEEKPQSEDAST 300

Query: 301 DGVELANAAAEV 313
           DGVELANAAAEV
Sbjct: 301 DGVELANAAAEV 300

[Close]

BLAST of HG10013460 vs. ExPASy TrEMBL
Match: A0A6J1FF97 (28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111443545 PE=4 SV=1)

HSP 1 Score: 500.0 bits (1286), Expect = 7.3e-138
Identity = 261/312 (83.65%), Postives = 280/312 (89.74%), Query Frame = 0


Query: 1   MALVRLPCSSSSSFLRSKQHHLIFLAPLSCPQNPTYPINGDFNLSISRSSPSLRSTSISH 60
           MALVRLPCSSSS FLRS Q +L+F++PLSCPQNP+Y  NGD  LS+SRSS SL ST + H
Sbjct: 1   MALVRLPCSSSSLFLRSNQQNLVFISPLSCPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60

Query: 61  NPLISIRAKRTSKFVFQFASTSQDEAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLF 120
           NPL SIRAKRT KFVFQ ASTSQD+AVASS SD EEFSR RLLAQNVPW+STPEDIRSLF
Sbjct: 61  NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKFGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALSNLESYEFEGRTLRLNYAKLKKE 180
           EK+GTV+DVELSMYNKIRNRGLAFVTMGSPEEALAA++NLESYEF GRTL+LNYAK+KKE
Sbjct: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKP PVTFNLFVANLPF+ARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKRDAETAISEFQGKHSYGASSAEMQIFMGRSLRVARSKQFVKLPSEENSQSEDTST 300
           AFKTK+DAE AISEFQGK+           FMGRSLRVARSKQFVKLPSEE SQSEDTST
Sbjct: 241 AFKTKKDAEAAISEFQGKN-----------FMGRSLRVARSKQFVKLPSEEKSQSEDTST 300

Query: 301 DGVELANAAAEV 313
           DGVELA+AAAEV
Sbjct: 301 DGVELASAAAEV 301

[Close]

BLAST of HG10013460 vs. ExPASy TrEMBL
Match: A0A6J1IE80 (28 kDa ribonucleoprotein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111476441 PE=4 SV=1)

HSP 1 Score: 497.7 bits (1280), Expect = 3.6e-137
Identity = 260/312 (83.33%), Postives = 280/312 (89.74%), Query Frame = 0


Query: 1   MALVRLPCSSSSSFLRSKQHHLIFLAPLSCPQNPTYPINGDFNLSISRSSPSLRSTSISH 60
           MALVRLPCSSS  FLRS Q +L+F+APLSC QNP+Y  NGD  LS+SRSS SL ST + H
Sbjct: 1   MALVRLPCSSSFLFLRSNQQNLVFIAPLSCLQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60

Query: 61  NPLISIRAKRTSKFVFQFASTSQDEAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLF 120
           NPL SIRAKRT KFVFQ ASTSQD+A+ASS SD EEFSRTRLLAQNVPW+STPEDIRSLF
Sbjct: 61  NPLTSIRAKRTRKFVFQLASTSQDDAIASSSSDAEEFSRTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKFGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALSNLESYEFEGRTLRLNYAKLKKE 180
           EK+GTV+DVELSMYNKIRNRGLAFVTMGSPEEALAA++NLESYEF GRTL+LNYAK+KKE
Sbjct: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKP PVTFNLFVANLPF+ARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKRDAETAISEFQGKHSYGASSAEMQIFMGRSLRVARSKQFVKLPSEENSQSEDTST 300
           AFKTK+DAE AISEFQGK+           FMGRSLRVARSKQFVKLPSEENSQS+DTST
Sbjct: 241 AFKTKKDAEAAISEFQGKN-----------FMGRSLRVARSKQFVKLPSEENSQSDDTST 300

Query: 301 DGVELANAAAEV 313
           DGVELA+AAAEV
Sbjct: 301 DGVELASAAAEV 301

[Close]

BLAST of HG10013460 vs. TAIR 10
Match: AT4G09040.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 257.3 bits (656), Expect = 1.6e-68
Identity = 159/310 (51.29%), Postives = 202/310 (65.16%), Query Frame = 0


Query: 1   MALVRLPCSSSSSFLRSKQHHLIFLAPLSCPQNPTYPINGDFNLSISRSSPSLRSTSISH 60
           MAL+RLP  S           L  L   S  +NP  P     N S+S S+PSL       
Sbjct: 1   MALLRLPGIS-----------LQILGHKSNQKNPN-PNVAFTNHSLSLSTPSLCRLHRHA 60

Query: 61  NPLISIRAKRTSKFVFQFASTSQDEAVASSPSDT-------EEFSRTRLLAQNVPWNSTP 120
               SI AK +      F++T+Q+  + SS S +       EE S+TRL+AQNVPW STP
Sbjct: 61  TFPDSIPAK-SRNLTSYFSTTTQEPVLESSSSSSSAPEVVEEEISKTRLIAQNVPWTSTP 120

Query: 121 EDIRSLFEKFGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALSNLESYEFEGRTLRLN 180
           EDIRSLFEK+G+V+D+E+SM+ K RNRGL F+ M SPEEA  AL +LES E+EGR L+++
Sbjct: 121 EDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVD 180

Query: 181 YAKLKKEKP-SPPVKPKPV-TFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENP 240
           YAK KK+K  +P   P PV TFNLFVANL FEARAK L+EFFD+ +GNVVS ++IFHENP
Sbjct: 181 YAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENP 240

Query: 241 RRSSGYGFVAFKTKRDAETAISEFQGKHSYGASSAEMQIFMGRSLRVARSKQFVKLPSEE 300
           RRSSGYGFV+FKTK+ AE A+ EFQGK            F+GR +R+A+SKQFVKL ++E
Sbjct: 241 RRSSGYGFVSFKTKKQAEAALIEFQGKD-----------FLGRPIRLAKSKQFVKLQAKE 286

Query: 301 NSQSEDTSTD 302
             Q  +   +
Sbjct: 301 GLQPPEEEAE 286

[Close]

BLAST of HG10013460 vs. TAIR 10
Match: AT4G09040.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 247.3 bits (630), Expect = 1.6e-65
Identity = 127/206 (61.65%), Postives = 159/206 (77.18%), Query Frame = 0


Query: 98  SRTRLLAQNVPWNSTPEDIRSLFEKFGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAAL 157
           S+TRL+AQNVPW STPEDIRSLFEK+G+V+D+E+SM+ K RNRGL F+ M SPEEA  AL
Sbjct: 32  SKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATAL 91

Query: 158 SNLESYEFEGRTLRLNYAKLKKEKP-SPPVKPKPV-TFNLFVANLPFEARAKDLREFFDS 217
            +LES E+EGR L+++YAK KK+K  +P   P PV TFNLFVANL FEARAK L+EFFD+
Sbjct: 92  KSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDA 151

Query: 218 GSGNVVSAQIIFHENPRRSSGYGFVAFKTKRDAETAISEFQGKHSYGASSAEMQIFMGRS 277
            +GNVVS ++IFHENPRRSSGYGFV+FKTK+ AE A+ EFQGK            F+GR 
Sbjct: 152 DTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKD-----------FLGRP 211

Query: 278 LRVARSKQFVKLPSEENSQSEDTSTD 302
           +R+A+SKQFVKL ++E  Q  +   +
Sbjct: 212 IRLAKSKQFVKLQAKEGLQPPEEEAE 226

[Close]

BLAST of HG10013460 vs. TAIR 10
Match: AT2G35410.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 127.1 bits (318), Expect = 2.5e-29
Identity = 108/312 (34.62%), Postives = 155/312 (49.68%), Query Frame = 0


Query: 9   SSSSSFLRSKQHHLIFLAPLSCPQNPTYPINGDFNLSI-SRSSP--SLRSTSISHNPLIS 68
           SSS  +L SK+   + L  LS              L I S  SP  SLRS S +   L+S
Sbjct: 18  SSSKPYLFSKRSSSLKLTALS--------------LRIPSNLSPVFSLRSGSDNSRRLVS 77

Query: 69  IRAKRTSKFVFQFASTSQDEAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLFEKFGT 128
           +      K       TSQ+E    + +      + +L   N+PW+ +  DI  LF + GT
Sbjct: 78  VLCSVAEKETSADEETSQEEKTEETQNSN---LKRKLFVFNLPWSMSVNDISELFGQCGT 137

Query: 129 VLDVELSMYNKIRNRGLAFVTMGSPEEALAALSNLESYEFEGRTLRLNYA-KLKKEKPS- 188
           V +VE+      +NRG AFVTM S EEA AA+   ++++  GR + +++A + KK  P  
Sbjct: 138 VNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKS 197

Query: 189 ----PPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGF 248
               P   P      L+V+NL ++AR+  LRE F +   N VSA+++F +   RSSGYGF
Sbjct: 198 PNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGF 257

Query: 249 VAFKTKRDAETAISEFQGKHSYGASSAEMQIFMGRSLRVARSKQFVKLPSEENSQSEDTS 308
           V+F T+ +AE AI++  GK   G       I +  SLR A   +      E N+ SED  
Sbjct: 258 VSFATREEAENAITKLNGKEIMG-----RPITLKFSLRSASESEDGD-SVEANNASEDGD 304

Query: 309 TDGVELANAAAE 312
           T  VE  N + E
Sbjct: 318 T--VEDKNTSEE 304

[Close]

BLAST of HG10013460 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 90.9 bits (224), Expect = 2.0e-18
Identity = 84/314 (26.75%), Postives = 149/314 (47.45%), Query Frame = 0


Query: 33  NPTYPINGDFNLSISRSSPSLRSTSISHNPLI---SIRAKRTSKFVFQFASTSQDEAVAS 92
           NP    + +  L    +  S +  +   NPLI   +IR  R        AS++ DE  AS
Sbjct: 25  NPLLSSHSNSQLFYRFTPKSFKLVANCPNPLILHSNIRRHRFFCAAETEASSADDEIQAS 84

Query: 93  -------------SPSDTEEFSRT--------RLLAQNVPWNSTPEDIRSLFEKFGTVLD 152
                           + EE  +T        RL   N+P+  T  ++  +F + GTV+D
Sbjct: 85  VEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVD 144

Query: 153 VELSMYNKI--RNRGLAFVTMGSPEEALAALSNLESYEFEGRTLRLNYAKLKKEKPSPPV 212
           V++ +Y+K+  R+RG  FVTMGS EEA  A+    S +  GRT+++N+ ++ +   +  +
Sbjct: 145 VQI-VYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVM 204

Query: 213 KPKPVTFN---------LFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGY 272
           + K    N         ++  NL +   ++ L++ F    G V+ A++I+  N  RS G+
Sbjct: 205 RTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPG-VLGAKVIYERNTGRSRGF 264

Query: 273 GFVAFKTKRDAETAISEFQGKHSYGASSAEMQIFMGRSLRVARSKQFVKLPSEENSQSED 311
           GF++F++  + ++A++   G    G +       +  +L   R K  V  PS E  ++E+
Sbjct: 265 GFISFESAENVQSALATMNGVEVEGRA-------LRLNLASEREKPTVSPPSVEEGETEE 324

[Close]

BLAST of HG10013460 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 86.7 bits (213), Expect = 3.7e-17
Identity = 65/203 (32.02%), Postives = 105/203 (51.72%), Query Frame = 0


Query: 88  ASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLFEKFGTVLDVELSMYNKI--RNRGLAFV 147
           AS+  D      T+L   N+P+N     +  + + F     VE+ +YN+   ++RG AFV
Sbjct: 73  ASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEV-LYNRDTGQSRGFAFV 132

Query: 148 TMGSPEEALAALSNLESYEFEGRTLRLNYAKLKKEKPSPPVKP--KPVTFNLFVANLPFE 207
           TM + E+    + NL+  E+ GR L++N+A    +KP P  +P        LFV NL + 
Sbjct: 133 TMSNVEDCNIIIDNLDGTEYLGRALKVNFA----DKPKPNKEPLYPETEHKLFVGNLSWT 192

Query: 208 ARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKRDAETAISEFQGKHSYGA 267
             ++ L   F    G+VV A+++F  +  RS GYGFV + +K + ETA+    G      
Sbjct: 193 VTSESLAGAFRE-CGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDG------ 252

Query: 268 SSAEMQIFMGRSLRV--ARSKQF 285
              E++   GR++RV  A+ K+F
Sbjct: 253 --FELE---GRAIRVNLAQGKKF 258

The following BLAST results are available for this feature:

BLAST of HG10013460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897887.1	4.1e-151	91.67	31 kDa ribonucleoprotein, chloroplastic [Benincasa hispida]	[more]
XP_008466190.1	5.5e-148	90.06	PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >KAA0038685.1 ...	[more]
XP_004136268.1	7.5e-145	89.10	28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN60238.1 hypothetic...	[more]
XP_023535968.1	1.2e-137	83.65	28 kDa ribonucleoprotein, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022937168.1	1.5e-137	83.65	28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata] >KAG6591682.1 ...	[more]

BLAST of HG10013460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39061	2.8e-17	26.75	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
P28644	2.9e-14	29.05	28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1	[more]
P19684	4.9e-14	28.87	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q9ZUU4	6.4e-14	29.72	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29...	[more]
P49314	1.4e-13	27.94	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]

BLAST of HG10013460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TBD1	2.7e-148	90.06	31 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CS17	2.7e-148	90.06	31 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503681 ...	[more]
A0A0A0LEN0	3.6e-145	89.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889940 PE=4 SV=1	[more]
A0A6J1FF97	7.3e-138	83.65	28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1IE80	3.6e-137	83.33	28 kDa ribonucleoprotein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111476...	[more]

BLAST of HG10013460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09040.1	1.6e-68	51.29	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G09040.2	1.6e-65	61.65	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G35410.1	2.5e-29	34.62	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	2.0e-18	26.75	chloroplast RNA-binding protein 33	[more]
AT1G60000.1	3.7e-17	32.02	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 101..173 e-value: 1.8E-16 score: 70.7 coord: 194..269 e-value: 3.3E-14 score: 63.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 105..171 e-value: 7.7E-14 score: 51.3 coord: 195..259 e-value: 6.4E-15 score: 54.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 193..283 score: 16.636576
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 100..177 score: 16.721853
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 67..180 e-value: 2.3E-21 score: 78.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 181..304 e-value: 7.4E-20 score: 73.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 286..312
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 286..302
None	No IPR available	PANTHER	PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	coord: 1..302
None	No IPR available	PANTHER	PTHR23003:SF35	OS08G0483200 PROTEIN	coord: 1..302
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 100..262

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10013460.1	HG10013460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding