HG10013422 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10013422
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	NHL domain-containing protein
Location	Chr02: 1313184 .. 1313486 (-)
RNA-Seq Expression	HG10013422
Synteny	HG10013422

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAGCAGAGAGACAAAAAAGCAAGGAAGAAATAATGTCGTGTTGGGAGCGTTTGAAGATGAAGATTTTGACGAAAAAAAGAGAGGGCAATAATAATAATAATAATAATAATAATAATCTGTGTATGGGAGAGACAAGCGGATTGAATAATGGGAGTGGGGGATTATTCAGATACGATCCATTAAGCTACGCTCAGAATTTCGATGAGGGATTGGCTAATGAAGATGAAGGATTCTATCGAAGTTTTTCTGCAAGATATGCTGTTCCTTCTAAACCGCCAGCTAAGAAATTAGAATAG

mRNA sequence

ATGGAGAAAGCAGAGAGACAAAAAAGCAAGGAAGAAATAATGTCGTGTTGGGAGCGTTTGAAGATGAAGATTTTGACGAAAAAAAGAGAGGGCAATAATAATAATAATAATAATAATAATAATCTGTGTATGGGAGAGACAAGCGGATTGAATAATGGGAGTGGGGGATTATTCAGATACGATCCATTAAGCTACGCTCAGAATTTCGATGAGGGATTGGCTAATGAAGATGAAGGATTCTATCGAAGTTTTTCTGCAAGATATGCTGTTCCTTCTAAACCGCCAGCTAAGAAATTAGAATAG

Coding sequence (CDS)

ATGGAGAAAGCAGAGAGACAAAAAAGCAAGGAAGAAATAATGTCGTGTTGGGAGCGTTTGAAGATGAAGATTTTGACGAAAAAAAGAGAGGGCAATAATAATAATAATAATAATAATAATAATCTGTGTATGGGAGAGACAAGCGGATTGAATAATGGGAGTGGGGGATTATTCAGATACGATCCATTAAGCTACGCTCAGAATTTCGATGAGGGATTGGCTAATGAAGATGAAGGATTCTATCGAAGTTTTTCTGCAAGATATGCTGTTCCTTCTAAACCGCCAGCTAAGAAATTAGAATAG

Protein sequence

MEKAERQKSKEEIMSCWERLKMKILTKKREGNNNNNNNNNNLCMGETSGLNNGSGGLFRYDPLSYAQNFDEGLANEDEGFYRSFSARYAVPSKPPAKKLE

Homology

[Close]

BLAST of HG10013422 vs. NCBI nr
Match: KGN60281.1 (hypothetical protein Csa_002688 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 3.9e-31
Identity = 78/101 (77.23%), Postives = 89/101 (88.12%), Query Frame = 0


Query: 1   MEKAERQKSKEEIMSCWERLKMKILTKKREGNNNNNNNNNNLCM-GETSGLNNGSGGLFR 60
           M+KAE+QK+KEE MSCWERL+MKIL++K+EGN NN N+ N  CM GETSGLNN SGGLF+
Sbjct: 1   MKKAEKQKNKEETMSCWERLRMKILSRKKEGNINNKNDTNITCMGGETSGLNNRSGGLFK 60

Query: 61  YDPLSYAQNFDEGLANED-EGFYRSFSARYAVPSKPPAKKL 100
           YD LSYA+NFDEGLAN D EG +RSFSARYAVPSKPPAKKL
Sbjct: 61  YDALSYAKNFDEGLANADGEGSFRSFSARYAVPSKPPAKKL 101

[Close]

BLAST of HG10013422 vs. NCBI nr
Match: KAG6608120.1 (hypothetical protein SDJN03_01462, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.0 bits (232), Expect = 8.0e-16
Identity = 57/98 (58.16%), Postives = 65/98 (66.33%), Query Frame = 0


Query: 1  MEKAERQKSKEEIMSCWERLKMKILTKKREGNNNNNNNNNNLCMGETSGLNNGSGGLFRY 60
          MEK+E QKS EE++SCW RLK+K+L  KREGNN         C+G+T  LN G    FRY
Sbjct: 1  MEKSEGQKSSEELVSCWGRLKLKLLLMKREGNNP--------CIGDTKPLNGG----FRY 60

Query: 61 DPLSYAQNFDEGLANEDEGF-YRSFSARYAVPSKPPAK 98
          D LSYAQNFDEGL +EDE    R FSARY   SKP  K
Sbjct: 61 DALSYAQNFDEGLDDEDEELRCRGFSARYVSASKPLPK 86

[Close]

BLAST of HG10013422 vs. NCBI nr
Match: KAG7024589.1 (hypothetical protein SDJN02_13407, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-09
Identity = 49/99 (49.49%), Postives = 60/99 (60.61%), Query Frame = 0


Query: 1  MEKAERQKSKEEIMSCWERLKMKILTKKREGNNNNNNNNNNLCMGETSGLNNGSGGLFRY 60
          +E  E++KSK E  S W+ LK KI + K+EG  + N +                 G F Y
Sbjct: 3  IEGPEKKKSK-ETTSIWKCLKSKISSGKKEGTTSKNEH-----------------GKFSY 62

Query: 61 DPLSYAQNFDEGLAN-EDEGFYRSFSARYAVPSKPPAKK 99
          D +SYAQNFD+GLAN +DEG  RSFSARYAV SKPP KK
Sbjct: 63 DAVSYAQNFDDGLANADDEGSSRSFSARYAVASKPPPKK 83

[Close]

BLAST of HG10013422 vs. NCBI nr
Match: KAG6591707.1 (hypothetical protein SDJN03_14053, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.7 bits (169), Expect = 1.6e-08
Identity = 49/99 (49.49%), Postives = 60/99 (60.61%), Query Frame = 0


Query: 1  MEKAERQKSKEEIMSCWERLKMKILTKKREGNNNNNNNNNNLCMGETSGLNNGSGGLFRY 60
          +E  E++KSK E MS W+ LK KI + K+EG  + N +                 G F Y
Sbjct: 3  IEGPEKKKSK-ETMSIWKCLKSKI-SGKKEGTTSKNEH-----------------GKFSY 62

Query: 61 DPLSYAQNFDEGLAN-EDEGFYRSFSARYAVPSKPPAKK 99
          D +SYAQNFD+GL N +DEG  RSFSARYAV SKPP KK
Sbjct: 63 DAVSYAQNFDDGLGNADDEGSSRSFSARYAVASKPPPKK 82

[Close]

BLAST of HG10013422 vs. NCBI nr
Match: KAG2698660.1 (hypothetical protein I3760_07G160100 [Carya illinoinensis] >KAG6705100.1 hypothetical protein I3842_07G165100 [Carya illinoinensis])

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-07
Identity = 43/91 (47.25%), Postives = 54/91 (59.34%), Query Frame = 0


Query: 10 KEEIMSCWERLKMKILTKKREGNNNNNNNNNNLCMGETSGLNNGSGGLFRYDPLSYAQNF 69
          KE ++SCW RLK+K+   ++   + N            S +    GG F+YDPLSYAQNF
Sbjct: 3  KEGLLSCWGRLKLKLPWTQQRVRSPNTR----------SRVVGKLGGRFKYDPLSYAQNF 62

Query: 70 DEGLANEDEGFY-RSFSARYAVP-SKPPAKK 99
          DEG  ++DE  Y R FSARYA P SKPP  K
Sbjct: 63 DEGWDDDDEEVYQRGFSARYAAPSSKPPGDK 83

[Close]

BLAST of HG10013422 vs. ExPASy TrEMBL
Match: A0A0A0LJR5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G893310 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.9e-31
Identity = 78/101 (77.23%), Postives = 89/101 (88.12%), Query Frame = 0


Query: 1   MEKAERQKSKEEIMSCWERLKMKILTKKREGNNNNNNNNNNLCM-GETSGLNNGSGGLFR 60
           M+KAE+QK+KEE MSCWERL+MKIL++K+EGN NN N+ N  CM GETSGLNN SGGLF+
Sbjct: 1   MKKAEKQKNKEETMSCWERLRMKILSRKKEGNINNKNDTNITCMGGETSGLNNRSGGLFK 60

Query: 61  YDPLSYAQNFDEGLANED-EGFYRSFSARYAVPSKPPAKKL 100
           YD LSYA+NFDEGLAN D EG +RSFSARYAVPSKPPAKKL
Sbjct: 61  YDALSYAKNFDEGLANADGEGSFRSFSARYAVPSKPPAKKL 101

[Close]

BLAST of HG10013422 vs. ExPASy TrEMBL
Match: V7AZM1 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G145200g PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.5e-07
Identity = 42/93 (45.16%), Postives = 50/93 (53.76%), Query Frame = 0


Query: 1  MEKAERQKSK-EEIMSCWERLKMKILTKKREGNNNNNNNNNNLCMGETSGLNNGSGGLFR 60
          MEK+   +SK    +SCW  LKMK+   KR  +N                      G F+
Sbjct: 1  MEKSSSSRSKLNGWLSCWGCLKMKLPWAKRTSSNK-------------------PVGGFK 60

Query: 61 YDPLSYAQNFDEGLANEDEGFYRSFSARYAVPS 93
          YDPLSYAQNFDEGL  +DE  +R FSARYA PS
Sbjct: 61 YDPLSYAQNFDEGLVEDDEELHRGFSARYAAPS 74

[Close]

BLAST of HG10013422 vs. ExPASy TrEMBL
Match: A0A1R3FYB4 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_30223 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.8e-06
Identity = 43/96 (44.79%), Postives = 55/96 (57.29%), Query Frame = 0


Query: 1  MEKAERQK--SKEEIMSCWERLKMKILTKKREGNNNNNNNNNNLCMGETSGLNNGSGGLF 60
          ME++   K  ++E ++SCW RLK+K+   KR        N  N         N    G F
Sbjct: 1  MERSSPSKNTNEEGLLSCWGRLKLKLPCTKR-----RMRNLGNTITAPFKAKNPKPAGGF 60

Query: 61 RYDPLSYAQNFDEGLANED-EG-FYRSFSARYAVPS 93
          RYDPLSYAQNFD+G  ++D EG  YR FS+RYA PS
Sbjct: 61 RYDPLSYAQNFDDGCLDDDIEGSLYRGFSSRYAAPS 91

[Close]

BLAST of HG10013422 vs. ExPASy TrEMBL
Match: G7K5Z3 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_5g067050 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.6e-06
Identity = 37/79 (46.84%), Postives = 43/79 (54.43%), Query Frame = 0


Query: 14 MSCWERLKMKILTKKREGNNNNNNNNNNLCMGETSGLNNGSGGLFRYDPLSYAQNFDEGL 73
          +SCW   K+K+   KR+          N C        N S G F YDPLSY+QNFDEGL
Sbjct: 13 LSCWGCFKLKLPWTKRK----------NTC--------NKSTGGFGYDPLSYSQNFDEGL 72

Query: 74 ANEDEGFYRSFSARYAVPS 93
            +DE   R FSARYA PS
Sbjct: 73 MEDDEESCRRFSARYAAPS 73

[Close]

BLAST of HG10013422 vs. ExPASy TrEMBL
Match: A0A1R3GHI4 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_35304 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 8.1e-06
Identity = 43/96 (44.79%), Postives = 54/96 (56.25%), Query Frame = 0


Query: 1  MEKAERQK--SKEEIMSCWERLKMKILTKKREGNNNNNNNNNNLCMGETSGLNNGSGGLF 60
          ME++   K  ++E  +SCW RLK+K+   KR        N  N         N    G F
Sbjct: 1  MERSSPSKNTNEEGSLSCWGRLKLKLPCTKR-----RMRNLGNTITAPFKAKNPKPAGGF 60

Query: 61 RYDPLSYAQNFDEGLANED-EG-FYRSFSARYAVPS 93
          RYDPLSYAQNFD+G  ++D EG  YR FS+RYA PS
Sbjct: 61 RYDPLSYAQNFDDGCLDDDIEGSLYRGFSSRYAAPS 91

[Close]

BLAST of HG10013422 vs. TAIR 10
Match: AT5G14890.1 (NHL domain-containing protein )

HSP 1 Score: 41.6 bits (96), Expect = 4.4e-04
Identity = 27/63 (42.86%), Postives = 33/63 (52.38%), Query Frame = 0


Query: 40  NNLCMGE-TSGLNNGSGGLFRYDPLSYAQNFDEGLAN---EDEGFYRSFSARYAVPSKPP 99
           N+ C G    G N      FRYD  SY+ NFD+G      EDE  YR +S R+A PS P 
Sbjct: 676 NHCCNGGIDGGCNRPEHVSFRYDSWSYSLNFDDGKQTGHFEDEFPYRDYSMRFAAPSLPV 735

The following BLAST results are available for this feature:

BLAST of HG10013422 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60281.1	3.9e-31	77.23	hypothetical protein Csa_002688 [Cucumis sativus]	[more]
KAG6608120.1	8.0e-16	58.16	hypothetical protein SDJN03_01462, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7024589.1	1.9e-09	49.49	hypothetical protein SDJN02_13407, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6591707.1	1.6e-08	49.49	hypothetical protein SDJN03_14053, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG2698660.1	3.0e-07	47.25	hypothetical protein I3760_07G160100 [Carya illinoinensis] >KAG6705100.1 hypothe...	[more]

BLAST of HG10013422 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10013422 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJR5	1.9e-31	77.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G893310 PE=4 SV=1	[more]
V7AZM1	1.5e-07	45.16	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G145200g PE=4 ...	[more]
A0A1R3FYB4	2.8e-06	44.79	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_30223 PE=4 ...	[more]
G7K5Z3	3.6e-06	46.84	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_5g067050 PE=4 SV=1	[more]
A0A1R3GHI4	8.1e-06	44.79	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_35304 PE=4 SV=1	[more]

BLAST of HG10013422 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14890.1	4.4e-04	42.86	NHL domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168:SF39	SUBFAMILY NOT NAMED	coord: 8..93
None	No IPR available	PANTHER	PTHR33168	STRESS INDUCED PROTEIN-RELATED	coord: 8..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10013422.1	HG10013422.1	mRNA