HG10013405 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10013405
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr02: 1117978 .. 1123191 (+)
RNA-Seq Expression	HG10013405
Synteny	HG10013405

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACTTTGGCCCGAAGCCCAAAGAGAAGAACCAAGCCCAAGCAAACCAAATCTAGATGATAGGGCCCAAAGGGCTGAGCACAAGGCCCAAATGTGCCCACGAAAGCTCTGTAAGTAGATAAATTTTCCATCATTTCAAAGTTAGAAATTCTAGAGAAAAATTCATACGAAATTCGAAAATCAACAAAGTCTTCAAATTCTTGAGAATCAAACTCTCTTTAAAGACGAAAATAGAGAACTTGAGGATTCAGAGACAACTTTCAAGAGATTCGAGATTCTTTGAACAAAAAACTTGAAGATCATAAAACTTCAAAGACTCAAAATCTCTTTGAAGACGTAAGGACCTCAGAACACCAAGTGACTCTTCAACAAGTTGAAGATTCAATCTAGAGAGCAAGCTACAAAGTCCTCCAGAGAAAGTTAACATCATAGACAGGCTGCGAAACACTCAAGACAAATTTAATATGAGAGAGAGAACCAAAGGATAAATATTGAAGATTGCATCACACCTAGACAAAAATCAATACAAATCAAGTTCATGACACAAATCAAATTTCATAGTCGAAATCTCATGTGAATATTCACATTGGGAAAAAAAATTGTAAATAGTTCTCATAGGACAAAATTGTAACTTCTTTTCAAACTATTAGGACCAAATTTATAATTTAACAAAAAAATATATATAATACCTCACCAATAAGGGAGTGTATAGCTATATTTACAATATTTAGAAACTTTGTACGGTAGATATAGCTATTTATATTGTCACCCCTAATACGTTTCATCATAGTTGTAGAAAAATACATTTAATGAGGCTGCAATCAAGCCCCACAAGTTTTACAAAAGGACACTTTGACGTATGACCCAAAGTATTAAAAGAAGGGCCCATAATCTGAGACCAACACGGCCCATTTCTTCTTTCATAAGTAAATTTCTGTTTTTTATTTTTGAAAAATTGAAATTCATGCTTTTGAAAATAAAACAAATGAAATTGCCAAACAATACCTGTAGTGAAATAATGAACTGATTTTGGAATTAATTTAGATTTTAGATCTTAAACCTTTTTTTTTTTTTTTTTTTTGGAATTCCTATCTTAATATTTGTGTATAATATTTATAATCATTAAAATATAAAAAATGACCTTCTAACTTTTTTTTTAAGAGACAATCATCTCCTTTCTTTATAGAGTTCAACATGCGGAAATGCAAATTTGAACTTCTGACATTTCAATTATTTCTTATTTCTTAGCACGAAATTTATTAACTATATGAAAGTGTAAGAGATACACTTGAAATTTTCCAAACAACAAAAAAATAAACTAATAAGTGGAAAGTAGACCCACCCTATAAGCACACAAAAGGGTAATGGGATTCAAGTGGATGGTCACACCATTCAAAAGCTAAGTATGAGTTCAAAACTAAGGAGGTGTTTGGCCTCCAAGTTGGGTTGGGTTGGGTGGATAAAAAAAAAAAAACATACCCACCATTTGATTCACCAATAATTAAAGAGATTTATTATCTCGTTATTCGCATTAACTCACATTTCTCACCTCAACTCAACTCAACTTTGTGCTCCACACGCCTCTAAAACATATATATTTAGGCATTAAAAAATGGATAGGATGAAGCAAATAATATAGAGAGGAAAAAAACATAGAAGAGGAAAAAGATGCTTAGTGTGTAGTTGTAATAGGAGCCAGAGAAAAGTGAAGGGAAGAGATAAAGAGGACATGGTAAAGTATTAAACAGACATCCATCAAATCCCACTGATCTGCTCAGTGTCCCATTTCTCTGTTGTGCAGTTCCAATCAAAAAACAGCATCTCCATTCCACCAACCATTAAAATACATTCATAATAATAATAATAATACAATACCAACTTGCTTGTTTCACACACAAACCCAAACTTAAACCTCTGTTTTTCTAATCATACTCACACTTCCAAACCAAAAGGACACTCTGCTTCTCTGCTTCTCTGCCCCCTCTCCCTCTTTCTTCTTCTTCTCTTACAACATTAAACACATTCAATGAAAAAGTATGGAGGAAAAAAAAAAATAGACCCTTTACTTTTACTCTATTTAACTCCATGTCCTACACTTTCCCTTCGGACCCCATCACATTACTCTTACCACAATTCTAAATTCTATTCAACCACCAACATTTCTCTTTTCCTCTTCTGCTCTTTCAACTCATTGCCCTGCTAAACATTTACTCCATCAACTTTGATATCCTGATCATTATACTTATAAATGATTCTGAATTCTACACTTTATATTATTACTTTTTCAGCTCCATCAGAGTCTTATGCTTCTTACTTCTTAGAAATAGCTAACAGCTAACAGGTAAGGTAACCTTCATTCCTTCTACCTGCTACTTCACCACAGATCACACATTGAATACACTCAACATGACAGCCATAGGACCCTACACTTCTGCATATCTCTTACCCTTCTTACTCCCTCCATCCTGATCCAACAGGTAATGTAGTTTGTACACAGGATGACAGGAAATCCAATTTTATACCATATACTGTACATCAAATCCCATTTAATACATTTCCCCCACAGTAGTTTAACTAAAGTTTCTGTTGCTACATATACTTATATATTTTTCCAGGAATTTATTATAGGGTATAGATTGTTTATATATATAAGAAAAAAAAACAGAGAAATTGCAAACTAGTAGTTAGAGAAAACAGAAAATATAGTTGCATTAAAGGAGTTAACCGAGTTAATCTCAGAGTCACTGTCATATTCCCTAATCTATTCAAAAGTGGCCAATGAGACATCTTCTCTAGAAATGGGGTGTTGTCTACATCTTTTTGAGGTAGAGGAACAGCCTGTCCTAAATGAACCAAATTCAGAGAGATTGAAGTCATGTATTTTCTTTTATCTCAACGCACGTCTTCTCCTTGCTCAAACTACCGTTACAAACACAATTGGGTAACAAACAAAAGAACAAAAAAATGCCCCACCATTACCAAACCCATGAGTTTAAACATCAGTCTCATGCATTGATTGTCAATTGTCACATCCTACAGCCTGCTCAGAGACTGGATTCCAAAATAACAATAAAAATTATTCATGATTAACACATTTGTTTTTGCAAGGACACAAAGAGAACAGTATTCAGAAAGAGCTGTGTAAGATTGATTACCTACTACATCTTTACCTCTTTAAATTCACCATGACATTGAAATATCAGGTTAATGGATTTCAAAAAATGCCATGTTAAACAACTTGACAGAAGTACCTTTGTCTTAAAGGATAAGCTTCAGCATGGTTCAGGAAGACTTGACAATATTCTGCCAGAATGGGGTAGAGGTGGATAGGATTTTGTTTGAGAACTTTCTTTAACAAAATAAGGGAGCCATTTTCCTCAAGACAAAAATGTACGGTAGACTTCAACAGAAGAATGTTAAAGATGAACTTGGCTCCTAACATCAAGAGCTCCCAGCCATAAAAACAACCACCATATGATAAGCATCAGAAATGAATCAATGGAGTATTAGTTGCTAGGACAATGTGCACGGACAGCTACATAACCAATTATGCTGAGGGTAAAGCACATGGAAATTCAAACTCATTTATCTAATTTTAGAAGGGAAGTCCAATAAGATATATGTACTCGGAACATTATGGTCACCAAGAATGCAGTTACGCGTAACAAAATTGCTTAAGAAAGCGGAGAGAATTGCATTTTGTCCAAAGAAGCAGACTGGTACTTGGAAACAAAGACATTGATCCATTGCATCTTGAAATTGGGCCATGAGAAGGAACAAAATAAATAAATAAATAAATAAACTCAGCCGGTTCCAGTGGTTGTCAATCAAGAGTATTCACCAAAGCACAACCTTCAAAATCTCTCAAGCTAGATCATATTTGAACAAACAAATGGATGGATTTGAACTGTCACAAAACTGGTTTCAGAAGCAGGGAGAGACTTGTCAAACAACTAAAATCACAGGACAAGAAACCTTTATTTCTGCATTGTGATTCTGCAGATATGAACTCATAAATCTCCGGTTATGCATCATACATAATTTATGACGTCTACTCTATTTAATATCAATTAATGGCACAGAATTCTCGTAGCCAGACCCTCATTTTGGGTAAACAAACTTCAACAAATCAACATACCAAAGCCTTGTCAGCAACGACAAGTTCATAGTTCATTGCCACATTGTTATTACCTATTTAGTTCATCTGTTAACTAAAAACAAAATCATTGTAAATGAACAATGCGGTCAAGCAAGCTAAAACAATTGAAGATAACCATTGCCGCCATCTATTCTCAACAAAACAAGTTGTAAACAGTAGCATCAACTCCAATGCTACAGCAACAAGGAGCCAACAAGCGGGTGTCAACTTCTGTAAAATGAGAAATAGATTTTGTCCTCTTCTAAATCTTAGAATCAAAAGTCCCTTATTAGCAACAAATATTATTGAAGATTGGCATCCAATAATACGCTAGGGACAGTCAAAACAAACACAAAGAACAAACATAGAAGTTACCAAAAGAAGAGAAAGACAAACAGAAAAGAGAAATAAATGAAGGGTTGAGAAAGGTAAAACAAGAGAGTGAAATGAACATATGCTTCTCTATTAATTGATTAGGGAAAAAATAACCCAATAAATGAAAATTTGGAAAGCATACATCATCCTCATCATTATCTGGATACATACATTTGGAATATCATCAAAATGCTTCTCACCCATTGAGCTGAAACGGGCATTTGGAAAAACCCCATTAAGGATGAAGAAAACCCCAGAAAATCCTGGTTTAAAACTCAAGGGAAACCCCAGAAAACCCCCAAAAATAACAATAAGTGAAAAGGGGTATGAATGTTTTTGTGTTTTTTTTTTTCTTTTTTTCCTTTTTCTTTTGGGAGAGACGAAGAAGAAACTATTTTATATATACGGTATTGTTTGCCTGGCTCCATCCTGTCTGCCTTTTTCGACGCAATGAGAGGATTAAACAGAGAGAAGCTACATTGTACTGCAACTATCTGTAAATGCCCGAAAACGACCTTCGATTTACGAAGGCACAGTGAGAAGTTACCTGTTGGGGACCAAGGCCAGCTTGGTCATTGCATAATGGGGAAGAGAAAAACCTGTAATCCACAACCATTGCAGAAAACAGAGAGAAAGACGAAAGTTGCCTGGTTTTCTGGGGAAGGAGAAGAGATTTTAGGAATAGAGAAAGAAGGTTAA

mRNA sequence

ATGACACTTTGGCCCGAAGCCCAAAGAGAAGAACCAAGCCCAAGCAAACCAAATCTAGATGATAGGGCCCAAAGGGCTGAGCACAAGGCCCAAATGTGCCCACGAAAGCTCTCATACATCATCCTCATCATTATCTGGATACATACATTTGGAATATCATCAAAATGCTTCTCACCCATTGAGCTGAAACGGGCATTTGGAAAAACCCCATTAAGGATGAAGAAAACCCCAGAAAATCCTGGTTTAAAACTCAAGGGAAACCCCAGAAAACCCCCAAAAATAACAATAAGTGAAAAGGGAGACGAAGAAGAAACTATTTTATATATACGGTATTGTTTGCCTGGCTCCATCCTGTCTGCCTTTTTCGACGCAATGAGAGGATTAAACAGAGAGAAGCTACATTGTACTGCAACTATCTGTAAATGCCCGAAAACGACCTTCGATTTACGAAGGCACAGTGAGAAGTTACCTGTTGGGGACCAAGGCCAGCTTGGTCATTGCATAATGGGGAAGAGAAAAACCTGTAATCCACAACCATTGCAGAAAACAGAGAGAAAGACGAAAGTTGCCTGGTTTTCTGGGGAAGGAGAAGAGATTTTAGGAATAGAGAAAGAAGGTTAA

Coding sequence (CDS)

ATGACACTTTGGCCCGAAGCCCAAAGAGAAGAACCAAGCCCAAGCAAACCAAATCTAGATGATAGGGCCCAAAGGGCTGAGCACAAGGCCCAAATGTGCCCACGAAAGCTCTCATACATCATCCTCATCATTATCTGGATACATACATTTGGAATATCATCAAAATGCTTCTCACCCATTGAGCTGAAACGGGCATTTGGAAAAACCCCATTAAGGATGAAGAAAACCCCAGAAAATCCTGGTTTAAAACTCAAGGGAAACCCCAGAAAACCCCCAAAAATAACAATAAGTGAAAAGGGAGACGAAGAAGAAACTATTTTATATATACGGTATTGTTTGCCTGGCTCCATCCTGTCTGCCTTTTTCGACGCAATGAGAGGATTAAACAGAGAGAAGCTACATTGTACTGCAACTATCTGTAAATGCCCGAAAACGACCTTCGATTTACGAAGGCACAGTGAGAAGTTACCTGTTGGGGACCAAGGCCAGCTTGGTCATTGCATAATGGGGAAGAGAAAAACCTGTAATCCACAACCATTGCAGAAAACAGAGAGAAAGACGAAAGTTGCCTGGTTTTCTGGGGAAGGAGAAGAGATTTTAGGAATAGAGAAAGAAGGTTAA

Protein sequence

MTLWPEAQREEPSPSKPNLDDRAQRAEHKAQMCPRKLSYIILIIIWIHTFGISSKCFSPIELKRAFGKTPLRMKKTPENPGLKLKGNPRKPPKITISEKGDEEETILYIRYCLPGSILSAFFDAMRGLNREKLHCTATICKCPKTTFDLRRHSEKLPVGDQGQLGHCIMGKRKTCNPQPLQKTERKTKVAWFSGEGEEILGIEKEG

Homology

[Close]

BLAST of HG10013405 vs. NCBI nr
Match: KGN60298.1 (hypothetical protein Csa_001789 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-11
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 125 MRGLNREKLHCTATICKCPKTTFDLRRHSEKLPVGDQ 162
           MRGLNREKLHCTATICKCPKTTFDL+R SEKLPVGDQ
Sbjct: 1   MRGLNREKLHCTATICKCPKTTFDLQRRSEKLPVGDQ 37

[Close]

BLAST of HG10013405 vs. NCBI nr
Match: KAG6627778.1 (hypothetical protein CIPAW_15G153000 [Carya illinoinensis])

HSP 1 Score: 59.3 bits (142), Expect = 4.5e-05
Identity = 25/48 (52.08%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 139 ICKCPKTTFDLRRHSEKLPVGDQGQLGHCIMGKRKTCNPQPLQKTERK 187
           I K PK  FDL  H E++P+ DQG+ GHC+  +RKT  P+PLQ  ER+
Sbjct: 27  IYKSPKRAFDLEMHGERVPLSDQGKPGHCMKWERKTSPPRPLQNRERE 74

[Close]

BLAST of HG10013405 vs. ExPASy TrEMBL
Match: A0A0A0LET3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G894460 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 7.0e-12
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 125 MRGLNREKLHCTATICKCPKTTFDLRRHSEKLPVGDQ 162
           MRGLNREKLHCTATICKCPKTTFDL+R SEKLPVGDQ
Sbjct: 1   MRGLNREKLHCTATICKCPKTTFDLQRRSEKLPVGDQ 37

The following BLAST results are available for this feature:

BLAST of HG10013405 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60298.1	1.4e-11	94.59	hypothetical protein Csa_001789 [Cucumis sativus]	[more]
KAG6627778.1	4.5e-05	52.08	hypothetical protein CIPAW_15G153000 [Carya illinoinensis]	[more]

BLAST of HG10013405 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10013405 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LET3	7.0e-12	94.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G894460 PE=4 SV=1	[more]

BLAST of HG10013405 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10013405.1	HG10013405.1	mRNA