HG10013404 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10013404
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr02: 1103047 .. 1103295 (+)
RNA-Seq ExpressionHG10013404
SyntenyHG10013404
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCCAACAGCAGCGATGAGTGAAATGACCAAGCAGGCCCAGCTCAATATCTTCAGCCAGATCCAGGTGGAAGAGAATCTGGGCAATTTAGTTCTTGCCATGTACATCTCTATGGGAAAGTATACTGTCAATGGCCAAAATGAAGCTGCCCCAATCAATCCAAGGAAATCATTGAAGAATGGGAATATCATAGCTATCACAGTCGTCACTATAACATATGCAGTCCTCCAAATCAATCTGAAGTAG

mRNA sequence

ATGGATCCAACAGCAGCGATGAGTGAAATGACCAAGCAGGCCCAGCTCAATATCTTCAGCCAGATCCAGGTGGAAGAGAATCTGGGCAATTTAGTTCTTGCCATGTACATCTCTATGGGAAAGTATACTGTCAATGGCCAAAATGAAGCTGCCCCAATCAATCCAAGGAAATCATTGAAGAATGGGAATATCATAGCTATCACAGTCGTCACTATAACATATGCAGTCCTCCAAATCAATCTGAAGTAG

Coding sequence (CDS)

ATGGATCCAACAGCAGCGATGAGTGAAATGACCAAGCAGGCCCAGCTCAATATCTTCAGCCAGATCCAGGTGGAAGAGAATCTGGGCAATTTAGTTCTTGCCATGTACATCTCTATGGGAAAGTATACTGTCAATGGCCAAAATGAAGCTGCCCCAATCAATCCAAGGAAATCATTGAAGAATGGGAATATCATAGCTATCACAGTCGTCACTATAACATATGCAGTCCTCCAAATCAATCTGAAGTAG

Protein sequence

MDPTAAMSEMTKQAQLNIFSQIQVEENLGNLVLAMYISMGKYTVNGQNEAAPINPRKSLKNGNIIAITVVTITYAVLQINLK
Homology
BLAST of HG10013404 vs. NCBI nr
Match: PKA53791.1 (hypothetical protein AXF42_Ash011270 [Apostasia shenzhenica])

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-08
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 0

Query: 1  MDPTAAMSEMTKQAQLNIFSQIQVEENLGNLVLAMYISMGKYTVNGQNEAAPINPRKSLK 60
          MDP AA ++  KQ  L+I S   +  +LG  ++  YIS GKYTVNGQ  +AP NP  SLK
Sbjct: 1  MDPMAAATDTHKQTMLSICSTTALLLDLGIFLIDRYISTGKYTVNGQKASAPSNPNMSLK 60

Query: 61 NGNIIAITVVTITYAVLQINLK 83
           G  IA +++ +T  VL I+LK
Sbjct: 61 KGKTIAKSMLIVTNEVLHISLK 82

BLAST of HG10013404 vs. NCBI nr
Match: XP_034891066.1 (germin-like protein 8-6 [Populus alba])

HSP 1 Score: 55.1 bits (131), Expect = 3.4e-04
Identity = 34/81 (41.98%), Postives = 43/81 (53.09%), Query Frame = 0

Query: 1  MDPTAAMSEMTKQAQLNIFSQIQVEENLGNLVLAMYISMGKYTVNGQNEAAPINPRKSLK 60
          M P AA    +K  +   +    + +       AMYIS GKYTV GQ   AP + R SLK
Sbjct: 1  MAPHAAAMATSKHTRFRSWRANHLTDRRWIFFRAMYISTGKYTVIGQYPTAPRSARTSLK 60

Query: 61 NGNIIAITVVTITYAVLQINL 82
           GN +A TV T TY VL ++L
Sbjct: 61 KGNAMASTVTTTTYTVLHVSL 81

BLAST of HG10013404 vs. NCBI nr
Match: KYP70707.1 (hypothetical protein KK1_009935 [Cajanus cajan])

HSP 1 Score: 54.3 bits (129), Expect = 5.8e-04
Identity = 30/54 (55.56%), Postives = 34/54 (62.96%), Query Frame = 0

Query: 26 ENLGNLVLAMYISMGKYTVNGQNEAAPINPRKSLKNGNIIAITVVTITYAVLQI 80
          +NL  L    YIS+GKYTV GQ E AP  P   LK G  IA+T V ITY+VL I
Sbjct: 3  KNLVTLARTRYISVGKYTVKGQKEIAPSKPTTLLKKGYRIAMTEVNITYSVLHI 56

BLAST of HG10013404 vs. ExPASy TrEMBL
Match: A0A2I0AE15 (Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash011270 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 8.4e-09
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 0

Query: 1  MDPTAAMSEMTKQAQLNIFSQIQVEENLGNLVLAMYISMGKYTVNGQNEAAPINPRKSLK 60
          MDP AA ++  KQ  L+I S   +  +LG  ++  YIS GKYTVNGQ  +AP NP  SLK
Sbjct: 1  MDPMAAATDTHKQTMLSICSTTALLLDLGIFLIDRYISTGKYTVNGQKASAPSNPNMSLK 60

Query: 61 NGNIIAITVVTITYAVLQINLK 83
           G  IA +++ +T  VL I+LK
Sbjct: 61 KGKTIAKSMLIVTNEVLHISLK 82

BLAST of HG10013404 vs. ExPASy TrEMBL
Match: A0A0A9THD4 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.9e-05
Identity = 36/80 (45.00%), Postives = 45/80 (56.25%), Query Frame = 0

Query: 2  DPTAAMSEMTKQAQLNIFSQIQVEENLGNLVLAMYISMGKYTVNGQNEAAPINPRKSLKN 61
          DPTAA S+ T    L+  S   +    G L  AMY+  GKYTV+GQN  AP +P  +LK 
Sbjct: 14 DPTAASSDTTSAPTLSACSATHLRLPGGTLACAMYMVTGKYTVSGQNAMAPSSPSTALKK 73

Query: 62 GNIIAITVVTITYAVLQINL 82
          G+I   TVV  T AV   +L
Sbjct: 74 GSISDTTVVPATNAVRTTSL 93

BLAST of HG10013404 vs. ExPASy TrEMBL
Match: A0A151TUH6 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_009935 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.8e-04
Identity = 30/54 (55.56%), Postives = 34/54 (62.96%), Query Frame = 0

Query: 26 ENLGNLVLAMYISMGKYTVNGQNEAAPINPRKSLKNGNIIAITVVTITYAVLQI 80
          +NL  L    YIS+GKYTV GQ E AP  P   LK G  IA+T V ITY+VL I
Sbjct: 3  KNLVTLARTRYISVGKYTVKGQKEIAPSKPTTLLKKGYRIAMTEVNITYSVLHI 56

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PKA53791.11.7e-0847.56hypothetical protein AXF42_Ash011270 [Apostasia shenzhenica][more]
XP_034891066.13.4e-0441.98germin-like protein 8-6 [Populus alba][more]
KYP70707.15.8e-0455.56hypothetical protein KK1_009935 [Cajanus cajan][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2I0AE158.4e-0947.56Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash011270 P... [more]
A0A0A9THD41.9e-0545.00Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A151TUH62.8e-0455.56Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_009935 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10013404.1HG10013404.1mRNA