HG10013379 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10013379
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Protein Tat like
Location	Chr02: 895269 .. 895640 (+)
RNA-Seq Expression	HG10013379
Synteny	HG10013379

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCCCAAATTTAGATCTGATAGCTCTTGCTTGTCTCTACGGTTCCTTCATTGCTCTCGTTCTCCTCATCATCATCTTCTTTCTCTTGGTTATACTGTTTCTATCATCCTCCCTTGCTCTGTTTTCAGTATTTGTGGGGGACTTGTATGAAGCTTACTCAGTTATGAGTGTGTACTATGAAGAAGTGAAAGCTGAAATTGAATTGGGTGTGTGTTTAATGGTGTATGGGGTGATGGGGTTTGGTGTTGATGTTGTTTTGGGTATAAAATCTATTTTCCGACAGCAAAATCTAAGATTCAACATAAGGCATCCACAGATGAAGGTAAAAGAAAAATGGAGGTTTGGGTTTGGCATGCTTGACAAGCTATGA

mRNA sequence

ATGGTCCCAAATTTAGATCTGATAGCTCTTGCTTGTCTCTACGGTTCCTTCATTGCTCTCGTTCTCCTCATCATCATCTTCTTTCTCTTGGTTATACTGTTTCTATCATCCTCCCTTGCTCTGTTTTCAGTATTTGTGGGGGACTTGTATGAAGCTTACTCAGTTATGAGTGTGTACTATGAAGAAGTGAAAGCTGAAATTGAATTGGGTGTGTGTTTAATGGTGTATGGGGTGATGGGGTTTGGTGTTGATGTTGTTTTGGGTATAAAATCTATTTTCCGACAGCAAAATCTAAGATTCAACATAAGGCATCCACAGATGAAGGTAAAAGAAAAATGGAGGTTTGGGTTTGGCATGCTTGACAAGCTATGA

Coding sequence (CDS)

ATGGTCCCAAATTTAGATCTGATAGCTCTTGCTTGTCTCTACGGTTCCTTCATTGCTCTCGTTCTCCTCATCATCATCTTCTTTCTCTTGGTTATACTGTTTCTATCATCCTCCCTTGCTCTGTTTTCAGTATTTGTGGGGGACTTGTATGAAGCTTACTCAGTTATGAGTGTGTACTATGAAGAAGTGAAAGCTGAAATTGAATTGGGTGTGTGTTTAATGGTGTATGGGGTGATGGGGTTTGGTGTTGATGTTGTTTTGGGTATAAAATCTATTTTCCGACAGCAAAATCTAAGATTCAACATAAGGCATCCACAGATGAAGGTAAAAGAAAAATGGAGGTTTGGGTTTGGCATGCTTGACAAGCTATGA

Protein sequence

MVPNLDLIALACLYGSFIALVLLIIIFFLLVILFLSSSLALFSVFVGDLYEAYSVMSVYYEEVKAEIELGVCLMVYGVMGFGVDVVLGIKSIFRQQNLRFNIRHPQMKVKEKWRFGFGMLDKL

Homology

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BLAST of HG10013379 vs. NCBI nr
Match: KAA0038615.1 (hypothetical protein E6C27_scaffold92G001450 [Cucumis melo var. makuwa] >TYK31214.1 hypothetical protein E5676_scaffold455G005000 [Cucumis melo var. makuwa])

HSP 1 Score: 175.6 bits (444), Expect = 2.6e-40
Identity = 97/124 (78.23%), Postives = 113/124 (91.13%), Query Frame = 0


Query: 1   MVPNLDLIALACLYGSFIALVLLIIIFFLLVILFLSSSLALFSVFVGDLYEAYSVMSVYY 60
           MVPNLDL+ALACLYGSFIAL+LL++IFFLL++LFLSSSLALFSVFV DLY+AYSVMS+YY
Sbjct: 1   MVPNLDLLALACLYGSFIALILLLVIFFLLIVLFLSSSLALFSVFVSDLYDAYSVMSLYY 60

Query: 61  EEVKAEIELGVCLMVYGVMGFGVDVVLGIKSIFRQQNLRF-NIRHPQMKVKEKWRFGFGM 120
           E+VKAEIELG+ L+++GVMGFGVDVVL  KS+ RQQNL   NIR  QMKVKEKWRF FGM
Sbjct: 61  EDVKAEIELGLSLIMFGVMGFGVDVVLRTKSLLRQQNLILKNIRQQQMKVKEKWRFEFGM 120

Query: 121 LDKL 124
           L++L
Sbjct: 121 LEEL 124

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BLAST of HG10013379 vs. NCBI nr
Match: KGN60326.1 (hypothetical protein Csa_001171 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 3.4e-40
Identity = 97/124 (78.23%), Postives = 112/124 (90.32%), Query Frame = 0


Query: 1   MVPNLDLIALACLYGSFIALVLLIIIFFLLVILFLSSSLALFSVFVGDLYEAYSVMSVYY 60
           MVPNLDL+ALACLYGSFIAL+LL+IIFFLL++LFLSSSLALFSVFV DL++AYSVMS+YY
Sbjct: 1   MVPNLDLLALACLYGSFIALILLLIIFFLLIVLFLSSSLALFSVFVSDLFDAYSVMSLYY 60

Query: 61  EEVKAEIELGVCLMVYGVMGFGVDVVLGIKSIFRQQNLRF-NIRHPQMKVKEKWRFGFGM 120
           E+VKAEIELG+ L+V+GVMGFGVDVVL  KS+ RQQNLR  NIR  QMK KE WR GFGM
Sbjct: 61  EDVKAEIELGLSLIVFGVMGFGVDVVLYTKSLLRQQNLRLKNIRQQQMKFKENWRLGFGM 120

Query: 121 LDKL 124
           L++L
Sbjct: 121 LEEL 124

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BLAST of HG10013379 vs. NCBI nr
Match: KAG6591737.1 (putative beta-1,4-xylosyltransferase IRX9H, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166.0 bits (419), Expect = 2.0e-37
Identity = 92/119 (77.31%), Postives = 105/119 (88.24%), Query Frame = 0


Query: 1   MVPNLDLIALACLYGSFIALVLLIIIFFLLVILFLSSSLALFSVFVGDLYEAYSVMSVYY 60
           MVP+LDLIALACLYG FIAL LL++I  LLV+ FLS++LALFSVFVGDLY+AYSV+  YY
Sbjct: 525 MVPSLDLIALACLYGCFIALTLLLLISSLLVVFFLSATLALFSVFVGDLYDAYSVLCPYY 584

Query: 61  EEVKAEIELGVCLMVYGVMGFGVDVVLGIKSIFRQQNLRFNIRHPQMKVKEKWRFGFGM 120
           EE+KAE ELGVCLM+YGVMGFGVDVVLGIKS+FRQQNLRF +R PQMK KEK   GFG+
Sbjct: 585 EELKAETELGVCLMMYGVMGFGVDVVLGIKSLFRQQNLRFTVRLPQMKGKEKRWLGFGL 643

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BLAST of HG10013379 vs. NCBI nr
Match: KAG7024618.1 (hypothetical protein SDJN02_13436, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.0 bits (419), Expect = 2.0e-37
Identity = 92/119 (77.31%), Postives = 105/119 (88.24%), Query Frame = 0


Query: 1   MVPNLDLIALACLYGSFIALVLLIIIFFLLVILFLSSSLALFSVFVGDLYEAYSVMSVYY 60
           MVP+LDLIALACLYG FIAL LL++I  LLV+ FLS++LALFSVFVGDLY+AYSV+  YY
Sbjct: 136 MVPSLDLIALACLYGCFIALTLLLLISSLLVVFFLSATLALFSVFVGDLYDAYSVLCPYY 195

Query: 61  EEVKAEIELGVCLMVYGVMGFGVDVVLGIKSIFRQQNLRFNIRHPQMKVKEKWRFGFGM 120
           EE+KAE ELGVCLM+YGVMGFGVDVVLGIKS+FRQQNLRF +R PQMK KEK   GFG+
Sbjct: 196 EELKAETELGVCLMMYGVMGFGVDVVLGIKSLFRQQNLRFTVRLPQMKGKEKRWLGFGL 254

[Close]

BLAST of HG10013379 vs. NCBI nr
Match: KAB1204378.1 (hypothetical protein CJ030_MR8G014171 [Morella rubra])

HSP 1 Score: 68.2 bits (165), Expect = 5.8e-08
Identity = 47/107 (43.93%), Postives = 73/107 (68.22%), Query Frame = 0


Query: 1   MVPNLDLIALACLYGSFIALVLLIIIFFLLVILFLSSSLALFSVFVGDLYEAYSVMSVYY 60
           M+PNLDL+ LA LYGSFIA VLL ++  +L+ L L+ S+ LFS+ V DL+  +SV S++Y
Sbjct: 1   MIPNLDLLLLAFLYGSFIACVLLAVLSVILLSLCLAFSVTLFSIVVIDLHYVFSVCSLHY 60

Query: 61  EEVKAEIELGVCLMVYGVMGFGVDVVLGIKSIFRQQNLRFNIRHPQM 108
             +KA ++LG  L++Y +M + V +VL  K+   Q+   +NIR  ++
Sbjct: 61  ITLKANLQLGSVLILYIIMRYSVPMVLASKASLEQK--IYNIRKKRL 105

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BLAST of HG10013379 vs. ExPASy TrEMBL
Match: A0A5A7TB69 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005000 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.2e-40
Identity = 97/124 (78.23%), Postives = 113/124 (91.13%), Query Frame = 0


Query: 1   MVPNLDLIALACLYGSFIALVLLIIIFFLLVILFLSSSLALFSVFVGDLYEAYSVMSVYY 60
           MVPNLDL+ALACLYGSFIAL+LL++IFFLL++LFLSSSLALFSVFV DLY+AYSVMS+YY
Sbjct: 1   MVPNLDLLALACLYGSFIALILLLVIFFLLIVLFLSSSLALFSVFVSDLYDAYSVMSLYY 60

Query: 61  EEVKAEIELGVCLMVYGVMGFGVDVVLGIKSIFRQQNLRF-NIRHPQMKVKEKWRFGFGM 120
           E+VKAEIELG+ L+++GVMGFGVDVVL  KS+ RQQNL   NIR  QMKVKEKWRF FGM
Sbjct: 61  EDVKAEIELGLSLIMFGVMGFGVDVVLRTKSLLRQQNLILKNIRQQQMKVKEKWRFEFGM 120

Query: 121 LDKL 124
           L++L
Sbjct: 121 LEEL 124

[Close]

BLAST of HG10013379 vs. ExPASy TrEMBL
Match: A0A0A0LJX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895720 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.6e-40
Identity = 97/124 (78.23%), Postives = 112/124 (90.32%), Query Frame = 0


Query: 1   MVPNLDLIALACLYGSFIALVLLIIIFFLLVILFLSSSLALFSVFVGDLYEAYSVMSVYY 60
           MVPNLDL+ALACLYGSFIAL+LL+IIFFLL++LFLSSSLALFSVFV DL++AYSVMS+YY
Sbjct: 1   MVPNLDLLALACLYGSFIALILLLIIFFLLIVLFLSSSLALFSVFVSDLFDAYSVMSLYY 60

Query: 61  EEVKAEIELGVCLMVYGVMGFGVDVVLGIKSIFRQQNLRF-NIRHPQMKVKEKWRFGFGM 120
           E+VKAEIELG+ L+V+GVMGFGVDVVL  KS+ RQQNLR  NIR  QMK KE WR GFGM
Sbjct: 61  EDVKAEIELGLSLIVFGVMGFGVDVVLYTKSLLRQQNLRLKNIRQQQMKFKENWRLGFGM 120

Query: 121 LDKL 124
           L++L
Sbjct: 121 LEEL 124

[Close]

BLAST of HG10013379 vs. ExPASy TrEMBL
Match: A0A6A1UX23 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR8G014171 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.8e-08
Identity = 47/107 (43.93%), Postives = 73/107 (68.22%), Query Frame = 0


Query: 1   MVPNLDLIALACLYGSFIALVLLIIIFFLLVILFLSSSLALFSVFVGDLYEAYSVMSVYY 60
           M+PNLDL+ LA LYGSFIA VLL ++  +L+ L L+ S+ LFS+ V DL+  +SV S++Y
Sbjct: 1   MIPNLDLLLLAFLYGSFIACVLLAVLSVILLSLCLAFSVTLFSIVVIDLHYVFSVCSLHY 60

Query: 61  EEVKAEIELGVCLMVYGVMGFGVDVVLGIKSIFRQQNLRFNIRHPQM 108
             +KA ++LG  L++Y +M + V +VL  K+   Q+   +NIR  ++
Sbjct: 61  ITLKANLQLGSVLILYIIMRYSVPMVLASKASLEQK--IYNIRKKRL 105

[Close]

BLAST of HG10013379 vs. ExPASy TrEMBL
Match: A0A2R6QZJ5 (Protein Tat like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc12507 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.7e-08
Identity = 44/112 (39.29%), Postives = 72/112 (64.29%), Query Frame = 0


Query: 1   MVPNLDLIALACLYGSFIALVLLIIIFFLLVILFLSSSLALFSVFVGDLYEAYSVMSVYY 60
           MVPNLDLI LA L+GSFI+ +LL++IF  L+ L L+ S+ALFS+ + D Y  +S++S+Y+
Sbjct: 1   MVPNLDLILLAFLHGSFISCILLLVIFLTLICLLLAFSIALFSIVLIDSYHIFSLVSLYF 60

Query: 61  EEVKAEIELGVCLMVYGVMGFGVDVVLGIKSIFRQQ--NLRFNIRHPQMKVK 111
             ++A +E+G  + V+ +M F V+  L  K +      + R   +H   ++K
Sbjct: 61  GTLRANVEMGFAIGVFTLMHFMVNAALDSKPLVEGMVASFRLKAQHVMHQIK 112

[Close]

BLAST of HG10013379 vs. ExPASy TrEMBL
Match: A0A4S4DYY3 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_013584 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.4e-07
Identity = 42/113 (37.17%), Postives = 71/113 (62.83%), Query Frame = 0


Query: 1   MVPNLDLIALACLYGSFIALVLLIIIFFLLVILFLSSSLALFSVFVGDLYEAYSVMSVYY 60
           MVPNLDLI +A L+GSFI+ +LL+  F +L+ L L+ S+ LFS+ + D Y+ +S++S+Y+
Sbjct: 1   MVPNLDLILIAVLHGSFISCILLVFTFLMLICLLLAFSITLFSIVIIDSYDVFSMISLYF 60

Query: 61  EEVKAEIELGVCLMVYGVMGFGVDVVLGIKSIFRQQ--NLRFNIRHPQMKVKE 112
             ++A +ELG  L+++ ++ F V+  L  K        N +   RH    +K+
Sbjct: 61  GTLRANVELGFVLVLFTLLHFMVNAGLASKPRVESMVANFKVKARHVVDHIKD 113

The following BLAST results are available for this feature:

BLAST of HG10013379 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038615.1	2.6e-40	78.23	hypothetical protein E6C27_scaffold92G001450 [Cucumis melo var. makuwa] >TYK3121...	[more]
KGN60326.1	3.4e-40	78.23	hypothetical protein Csa_001171 [Cucumis sativus]	[more]
KAG6591737.1	2.0e-37	77.31	putative beta-1,4-xylosyltransferase IRX9H, partial [Cucurbita argyrosperma subs...	[more]
KAG7024618.1	2.0e-37	77.31	hypothetical protein SDJN02_13436, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAB1204378.1	5.8e-08	43.93	hypothetical protein CJ030_MR8G014171 [Morella rubra]	[more]

BLAST of HG10013379 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10013379 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TB69	1.2e-40	78.23	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LJX1	1.6e-40	78.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895720 PE=4 SV=1	[more]
A0A6A1UX23	2.8e-08	43.93	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR8G014171 PE=4 SV=1	[more]
A0A2R6QZJ5	3.7e-08	39.29	Protein Tat like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc12...	[more]
A0A4S4DYY3	1.4e-07	37.17	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0135...	[more]

BLAST of HG10013379 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10013379.1	HG10013379.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003824	catalytic activity