HG10013309 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10013309
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Protein HAPLESS 2 isoform X1
Location	Chr02: 273747 .. 275577 (+)
RNA-Seq Expression	HG10013309
Synteny	HG10013309

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAATGTAGCCAGTTCATTGGCCTCTGGTGTTTTTTCGGCCATTGGGAAAGTCTTTGGATCCCCACTTGATTTTCTCTCTGGAAGGTCCTGCAGGTTGGTTCCCTTATTTGCTTTTGATTTCCTCACCATGTGGCTTCCATCCGTAAACTTAATCATCTACCTGATTTTGTCATGTTCTGTATTTTTTTTTTTTTTAATTATTATTAGTATTTAATATTGATTACCTGATTTTGTCGTATTTTTTGCTTTTTTGATTGAGTATTGTTTACCTGATTTTGTCACTGCTTGCACATGTTCGCAGTTCAGTTTGTGGATCAACATGGGATTTCATATGCTACATAGAAAATTTCTGTGTTTCCAATTTGCTAAAGATGGGAATGGTCTTGATCCTTTCATACTTTGGTGAGTGAAATAATAAAGTTTGTGTATGTCATTACCATGGTATTTCAAATTTGCTGGAATTTATCTGTTTTCCATGGTTGGGAGAAAGCAGCTAAATCCTTGCATATCGAGGTCCAAAGTTATCTAATAATACAACCAATGTTAAATTACAAGTTTATTCCTAAACTTTGAAGTTCGTGTTTATTTGGTACTTGAACTTTTAAATGTGTTTAATAAGTCCTTAAAGTTTTAATTGTTTAATAAGTCTTTAAACTTTTGGTCTTGTGTGATCCTTATCAAATTCAAATTTTTTAAAACTTAATAGATCTATTTGACATAAATTTAAATTGACTCTAATAGAACTCTAAAATCTCTATTTTGTGTCTAGTAGATCAGTGAATTTTAAAAAGTTTGAATGTAATAGGACTAAATTTGTAATTTTGAAAGTTTAAAGACCAAACAGACACATGACTTAAAGTTTGGTGACTAATTTATACTCTAACCTACAACTTAATATACAAGCACTGTTAGTTATGTAAGCATAGCAAGGTTACCATCGTATTTGATTACAAGTTACAACTAATGATACACTATTAACGAACTCGCTTCTCTTATTTATAGAACATTTCTAGTTCAAGTAAAGCTTCTAACATCAGTAACTTACTGTATATAATATAATGATAAAATGCCAACTAAGTTTATATGGTACAGAAAGATGTAGCTATTTTCCCTGTGTTTCAAAATGTGATAACTTCTAGTTATCGAATGAAGTTTTAGGTCATGAAGCATATGGCTTACTGATGTAATTGTGATGGGAATGGGGAGATAGGGAATACAATCTACTGTTTGTCTTATAATAATGTTTATATATTATATAACCTTATACTACTATGCCTGGGATGACTCTAAATCATAGGCTCACAAGATCAAAAGAAATTTCTTAGGAAAGGGATCCAAATCCAGTCTAGATGTTTTAGTTACAAACTTACAAGTGATAGTGATAGTTTTCAGATGCTTAGAACTTAGTACCAAATAATATATATATGTGCATTTTTGTTTGTTGTTTATTACATAGATCATTAGTTCAGCACTTGAATTTGCCTTTTTCTATGCAGTTCTTTTACTCCTGTATTTATTACATAAAATTGGCATATTTGGATGCATTGGTCGGGGGCTCTGCAGAATGATATGGACTTGTTTATCTTCCTATTTCTATGCATGGGAGTACTGCTGCACTTTCATGTGTATCAAGCTTGCCAGTGTCAAGAGAACCAGAAGACGGCACTTTCGGAGAAGAGACCTTGAAGAAGAGTTTGAAAGCGAAGAAGGAAAATGCCGGCATGGGTCAACAAGCGATTCAAGCAATGTCCCCGAACATGTGGAGTCGAGAATTAGCAGACGGGCGTCTCGTCAATGGAAGAGGAACCACAGGGATTCTCAAATGA

mRNA sequence

ATGGGTAATGTAGCCAGTTCATTGGCCTCTGGTGTTTTTTCGGCCATTGGGAAAGTCTTTGGATCCCCACTTGATTTTCTCTCTGGAAGGTCCTGCAGTTCAGTTTGTGGATCAACATGGGATTTCATATGCTACATAGAAAATTTCTGTGTTTCCAATTTGCTAAAGATGGGAATGGTCTTGATCCTTTCATACTTTGTGTCAAGAGAACCAGAAGACGGCACTTTCGGAGAAGAGACCTTGAAGAAGAGTTTGAAAGCGAAGAAGGAAAATGCCGGCATGGGTCAACAAGCGATTCAAGCAATGTCCCCGAACATGTGGAGTCGAGAATTAGCAGACGGGCGTCTCGTCAATGGAAGAGGAACCACAGGGATTCTCAAATGA

Coding sequence (CDS)

ATGGGTAATGTAGCCAGTTCATTGGCCTCTGGTGTTTTTTCGGCCATTGGGAAAGTCTTTGGATCCCCACTTGATTTTCTCTCTGGAAGGTCCTGCAGTTCAGTTTGTGGATCAACATGGGATTTCATATGCTACATAGAAAATTTCTGTGTTTCCAATTTGCTAAAGATGGGAATGGTCTTGATCCTTTCATACTTTGTGTCAAGAGAACCAGAAGACGGCACTTTCGGAGAAGAGACCTTGAAGAAGAGTTTGAAAGCGAAGAAGGAAAATGCCGGCATGGGTCAACAAGCGATTCAAGCAATGTCCCCGAACATGTGGAGTCGAGAATTAGCAGACGGGCGTCTCGTCAATGGAAGAGGAACCACAGGGATTCTCAAATGA

Protein sequence

MGNVASSLASGVFSAIGKVFGSPLDFLSGRSCSSVCGSTWDFICYIENFCVSNLLKMGMVLILSYFVSREPEDGTFGEETLKKSLKAKKENAGMGQQAIQAMSPNMWSRELADGRLVNGRGTTGILK

Homology

[Close]

BLAST of HG10013309 vs. NCBI nr
Match: TYK30002.1 (protein HAPLESS 2 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 6.8e-36
Identity = 99/182 (54.40%), Postives = 109/182 (59.89%), Query Frame = 0


Query: 1   MGNVASSLASGVFSAIGKVFGSPLDFLSGRSCSSVCGSTWDFICYIENFCVSNL------ 60
           MGNVASSLAS VFSAIGK+FGSPLDFLSGRSCSSVCGSTWDFICYIENFCV+NL      
Sbjct: 32  MGNVASSLASDVFSAIGKIFGSPLDFLSGRSCSSVCGSTWDFICYIENFCVANLYAGISL 91

Query: 61  -----------------------------------------LKMGMVLIL--------SY 120
                                                    L +  +L+L        S 
Sbjct: 92  VSVVGNWKKAAKSSHIEISDFEMFECDGSKYVVTNLYSNLELNIQALLVLTAAVSCVSSL 151

Query: 121 FVSREPEDGTFGEETLKKSLKAKKENAGMGQQAIQAMSPNMWSRELADGRLVNGRGTTGI 128
            VS+E +D T GEET KKSLKAKKENA M QQA +AMS NM SRE+ADGRL +G GTT I
Sbjct: 152 PVSKEQDDDTLGEETWKKSLKAKKENASMSQQATRAMSLNMSSREVADGRLDDGEGTTKI 211

[Close]

BLAST of HG10013309 vs. NCBI nr
Match: XP_038897054.1 (uncharacterized protein LOC120085227 isoform X2 [Benincasa hispida])

HSP 1 Score: 134.0 bits (336), Expect = 8.8e-28
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MGNVASSLASGVFSAIGKVFGSPLDFLSGRSCSSVCGSTWDFICYIENFCVSNLLKMGMV 60
          MGNVASSL SG+FSAIGKVFGSPLDFLSGRSCSSVCGSTWDFICYIENFCVSNLLKMGMV
Sbjct: 1  MGNVASSLTSGIFSAIGKVFGSPLDFLSGRSCSSVCGSTWDFICYIENFCVSNLLKMGMV 60

Query: 61 LILSYFVS 69
          LILSYF S
Sbjct: 61 LILSYFAS 68

[Close]

BLAST of HG10013309 vs. NCBI nr
Match: XP_038897053.1 (uncharacterized protein LOC120085227 isoform X1 [Benincasa hispida])

HSP 1 Score: 133.7 bits (335), Expect = 1.2e-27
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MGNVASSLASGVFSAIGKVFGSPLDFLSGRSCSSVCGSTWDFICYIENFCVSNLLKMGMV 60
          MGNVASSL SG+FSAIGKVFGSPLDFLSGRSCSSVCGSTWDFICYIENFCVSNLLKMGMV
Sbjct: 1  MGNVASSLTSGIFSAIGKVFGSPLDFLSGRSCSSVCGSTWDFICYIENFCVSNLLKMGMV 60

Query: 61 LILSYFV 68
          LILSYFV
Sbjct: 61 LILSYFV 67

[Close]

BLAST of HG10013309 vs. NCBI nr
Match: XP_004142706.1 (protein HAPLESS 2 isoform X1 [Cucumis sativus] >XP_011653780.1 protein HAPLESS 2 isoform X1 [Cucumis sativus] >KGN54547.1 hypothetical protein Csa_012210 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 1.7e-26
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MGNVASSLASGVFSAIGKVFGSPLDFLSGRSCSSVCGSTWDFICYIENFCVSNLLKMGMV 60
          MGNVASSLAS VFSAIGK+FGSPLDFLSGRSCSSVCGSTWDFICYIENFCV+NLLKMGMV
Sbjct: 1  MGNVASSLASDVFSAIGKIFGSPLDFLSGRSCSSVCGSTWDFICYIENFCVANLLKMGMV 60

Query: 61 LILSYFV 68
           ILSYFV
Sbjct: 61 FILSYFV 67

[Close]

BLAST of HG10013309 vs. NCBI nr
Match: XP_008444189.1 (PREDICTED: protein HAPLESS 2 isoform X1 [Cucumis melo] >XP_016899850.1 PREDICTED: protein HAPLESS 2 isoform X1 [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 3.7e-26
Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MGNVASSLASGVFSAIGKVFGSPLDFLSGRSCSSVCGSTWDFICYIENFCVSNLLKMGMV 60
          MGNVASSLAS VFSAIGK+FGSPLDFLSGRSCSSVCGSTWDFICYIENFCV+NL+KMGMV
Sbjct: 1  MGNVASSLASDVFSAIGKIFGSPLDFLSGRSCSSVCGSTWDFICYIENFCVANLVKMGMV 60

Query: 61 LILSYFV 68
           ILSYFV
Sbjct: 61 FILSYFV 67

[Close]

BLAST of HG10013309 vs. ExPASy TrEMBL
Match: A0A5D3E285 (Protein HAPLESS 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold587G00030 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 3.3e-36
Identity = 99/182 (54.40%), Postives = 109/182 (59.89%), Query Frame = 0


Query: 1   MGNVASSLASGVFSAIGKVFGSPLDFLSGRSCSSVCGSTWDFICYIENFCVSNL------ 60
           MGNVASSLAS VFSAIGK+FGSPLDFLSGRSCSSVCGSTWDFICYIENFCV+NL      
Sbjct: 32  MGNVASSLASDVFSAIGKIFGSPLDFLSGRSCSSVCGSTWDFICYIENFCVANLYAGISL 91

Query: 61  -----------------------------------------LKMGMVLIL--------SY 120
                                                    L +  +L+L        S 
Sbjct: 92  VSVVGNWKKAAKSSHIEISDFEMFECDGSKYVVTNLYSNLELNIQALLVLTAAVSCVSSL 151

Query: 121 FVSREPEDGTFGEETLKKSLKAKKENAGMGQQAIQAMSPNMWSRELADGRLVNGRGTTGI 128
            VS+E +D T GEET KKSLKAKKENA M QQA +AMS NM SRE+ADGRL +G GTT I
Sbjct: 152 PVSKEQDDDTLGEETWKKSLKAKKENASMSQQATRAMSLNMSSREVADGRLDDGEGTTKI 211

[Close]

BLAST of HG10013309 vs. ExPASy TrEMBL
Match: A0A0A0L1V0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G361810 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 8.1e-27
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MGNVASSLASGVFSAIGKVFGSPLDFLSGRSCSSVCGSTWDFICYIENFCVSNLLKMGMV 60
          MGNVASSLAS VFSAIGK+FGSPLDFLSGRSCSSVCGSTWDFICYIENFCV+NLLKMGMV
Sbjct: 1  MGNVASSLASDVFSAIGKIFGSPLDFLSGRSCSSVCGSTWDFICYIENFCVANLLKMGMV 60

Query: 61 LILSYFV 68
           ILSYFV
Sbjct: 61 FILSYFV 67

[Close]

BLAST of HG10013309 vs. ExPASy TrEMBL
Match: A0A1S4DVV8 (protein HAPLESS 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487604 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.8e-26
Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MGNVASSLASGVFSAIGKVFGSPLDFLSGRSCSSVCGSTWDFICYIENFCVSNLLKMGMV 60
          MGNVASSLAS VFSAIGK+FGSPLDFLSGRSCSSVCGSTWDFICYIENFCV+NL+KMGMV
Sbjct: 1  MGNVASSLASDVFSAIGKIFGSPLDFLSGRSCSSVCGSTWDFICYIENFCVANLVKMGMV 60

Query: 61 LILSYFV 68
           ILSYFV
Sbjct: 61 FILSYFV 67

[Close]

BLAST of HG10013309 vs. ExPASy TrEMBL
Match: A0A6J1IVE5 (uncharacterized protein LOC111480312 OS=Cucurbita maxima OX=3661 GN=LOC111480312 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 3.4e-25
Identity = 59/67 (88.06%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MGNVASSLASGVFSAIGKVFGSPLDFLSGRSCSSVCGSTWDFICYIENFCVSNLLKMGMV 60
          MGNVASSLASG+F A+ KVFGSPLDFLSG+SCSSVCGSTWDFICYIENFCV+NLLKMGMV
Sbjct: 8  MGNVASSLASGLFLALNKVFGSPLDFLSGKSCSSVCGSTWDFICYIENFCVANLLKMGMV 67

Query: 61 LILSYFV 68
          +IL+YFV
Sbjct: 68 VILAYFV 74

[Close]

BLAST of HG10013309 vs. ExPASy TrEMBL
Match: A0A6J1FIX0 (uncharacterized protein LOC111445893 OS=Cucurbita moschata OX=3662 GN=LOC111445893 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 3.4e-25
Identity = 59/67 (88.06%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MGNVASSLASGVFSAIGKVFGSPLDFLSGRSCSSVCGSTWDFICYIENFCVSNLLKMGMV 60
          MGNVASSLASG+F A+ KVFGSPLDFLSG+SCSSVCGSTWDFICYIENFCV+NLLKMGMV
Sbjct: 8  MGNVASSLASGLFLALNKVFGSPLDFLSGKSCSSVCGSTWDFICYIENFCVANLLKMGMV 67

Query: 61 LILSYFV 68
          +IL+YFV
Sbjct: 68 VILAYFV 74

[Close]

BLAST of HG10013309 vs. TAIR 10
Match: AT1G21722.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78922.1); Has 47 Blast hits to 47 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 1; Plants - 42; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 97.4 bits (241), Expect = 8.5e-21
Identity = 45/66 (68.18%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 1  MGNVASSLASGVFSAIGKVFGSPLDFLSGRSCSSVCGSTWDFICYIENFCVSNLLKMGMV 60
          MGNV  S  +G   +IG  FGSPLDFLSG+SCSSVC S WDFICY+ENFCV+NL K  ++
Sbjct: 1  MGNVMDSFFTGFSHSIGNFFGSPLDFLSGKSCSSVCPSPWDFICYVENFCVANLAKTALI 60

Query: 61 LILSYF 67
          LILSYF
Sbjct: 61 LILSYF 66

[Close]

BLAST of HG10013309 vs. TAIR 10
Match: AT1G78922.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21722.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-07
Identity = 23/67 (34.33%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 1  MGNVASSLASGVFSAIGKVFGSPLDFLSGRSCSSVCGSTWDFICYIENFCVSNLLKMGMV 60
          MGN     ++ +   IG +F +PL    GRSC  VC   WD  C+IE+FC+ ++ K+ ++
Sbjct: 1  MGNAIGKASNDIGGFIGNIFTAPLKATLGRSCLDVCSGPWDLECFIEHFCLPDIAKLVLM 60

Query: 61 LILSYFV 68
            L + +
Sbjct: 61 SSLCFII 67

The following BLAST results are available for this feature:

BLAST of HG10013309 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK30002.1	6.8e-36	54.40	protein HAPLESS 2 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_038897054.1	8.8e-28	95.59	uncharacterized protein LOC120085227 isoform X2 [Benincasa hispida]	[more]
XP_038897053.1	1.2e-27	97.01	uncharacterized protein LOC120085227 isoform X1 [Benincasa hispida]	[more]
XP_004142706.1	1.7e-26	94.03	protein HAPLESS 2 isoform X1 [Cucumis sativus] >XP_011653780.1 protein HAPLESS 2...	[more]
XP_008444189.1	3.7e-26	92.54	PREDICTED: protein HAPLESS 2 isoform X1 [Cucumis melo] >XP_016899850.1 PREDICTED...	[more]

BLAST of HG10013309 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10013309 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E285	3.3e-36	54.40	Protein HAPLESS 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A0A0L1V0	8.1e-27	94.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G361810 PE=4 SV=1	[more]
A0A1S4DVV8	1.8e-26	92.54	protein HAPLESS 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487604 PE=4 SV=1	[more]
A0A6J1IVE5	3.4e-25	88.06	uncharacterized protein LOC111480312 OS=Cucurbita maxima OX=3661 GN=LOC111480312...	[more]
A0A6J1FIX0	3.4e-25	88.06	uncharacterized protein LOC111445893 OS=Cucurbita moschata OX=3662 GN=LOC1114458...	[more]

BLAST of HG10013309 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21722.1	8.5e-21	68.18	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G78922.1	1.1e-07	34.33	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35278	TRANSMEMBRANE PROTEIN-RELATED	coord: 1..67
None	No IPR available	PANTHER	PTHR35278:SF1	F8K7.16	coord: 1..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10013309.1	HG10013309.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane