HG10013234 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10013234
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Late cornified envelope protein 1E
Location	Chr01: 27968196 .. 27968628 (-)
RNA-Seq Expression	HG10013234
Synteny	HG10013234

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGAATCGCCCACTCTGCTGCTTGTGTGGCGACGTTGGTTTTCCAGCGAAACTCTTCCGCTGCCTTGATTGCTCCAATCGATTTCAGCACTCGTAAGACCGTCTTTTGTTTTAATTTATTAGGCTATGATACTATGTTAGATGTTGTATTATCTTAAACTTACATATTTTGGTAGTTCAGTTACTGCAGCAACTACTACTGTGGGGAATCGGGGGATGCAATAGTTCAAGTATGCGATTGGTGTCGAAGTGAACAGAGAACCCACCGTCCTGCCTCTGCAACTGCGAATAATAATAGTGGTACTATGTCCCACAAGGATCATAAAATCACTGATCAAATTACACAAATAAGAAGCTCCGGCGCCGGACTGCCTTCGTCTCGCCCTGCTCCACGCCGATACAAGCTTCTCAAGGATGTCATGTGTTAG

mRNA sequence

ATGGATTTGAATCGCCCACTCTGCTGCTTGTGTGGCGACGTTGGTTTTCCAGCGAAACTCTTCCGCTGCCTTGATTGCTCCAATCGATTTCAGCACTCTTACTGCAGCAACTACTACTGTGGGGAATCGGGGGATGCAATAGTTCAAGTATGCGATTGGTGTCGAAGTGAACAGAGAACCCACCGTCCTGCCTCTGCAACTGCGAATAATAATAGTGGTACTATGTCCCACAAGGATCATAAAATCACTGATCAAATTACACAAATAAGAAGCTCCGGCGCCGGACTGCCTTCGTCTCGCCCTGCTCCACGCCGATACAAGCTTCTCAAGGATGTCATGTGTTAG

Coding sequence (CDS)

ATGGATTTGAATCGCCCACTCTGCTGCTTGTGTGGCGACGTTGGTTTTCCAGCGAAACTCTTCCGCTGCCTTGATTGCTCCAATCGATTTCAGCACTCTTACTGCAGCAACTACTACTGTGGGGAATCGGGGGATGCAATAGTTCAAGTATGCGATTGGTGTCGAAGTGAACAGAGAACCCACCGTCCTGCCTCTGCAACTGCGAATAATAATAGTGGTACTATGTCCCACAAGGATCATAAAATCACTGATCAAATTACACAAATAAGAAGCTCCGGCGCCGGACTGCCTTCGTCTCGCCCTGCTCCACGCCGATACAAGCTTCTCAAGGATGTCATGTGTTAG

Protein sequence

MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSRPAPRRYKLLKDVMC

Homology

[Close]

BLAST of HG10013234 vs. NCBI nr
Match: XP_023526855.1 (uncharacterized protein LOC111790233 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191.8 bits (486), Expect = 3.2e-45
Identity = 86/114 (75.44%), Postives = 94/114 (82.46%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRT 60
           MDLNRPLCCLCGDVGFPAKLFRC +CSNRFQHSYCSN+YCGES D I ++CDWCR+E  T
Sbjct: 1   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHSYCSNFYCGESADPITRLCDWCRTEHTT 60

Query: 61  HRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSRPAPRRYKLLKDVMC 115
            RP  A ANN  G  S K HKITDQIT+ +SS  G+PS RPAPRRYKLLKDVMC
Sbjct: 61  RRPGPAAANN--GATSQKPHKITDQITETKSSATGVPSPRPAPRRYKLLKDVMC 112

[Close]

BLAST of HG10013234 vs. NCBI nr
Match: XP_022924678.1 (uncharacterized protein LOC111432109 [Cucurbita moschata])

HSP 1 Score: 191.0 bits (484), Expect = 5.5e-45
Identity = 85/114 (74.56%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRT 60
           MDLNRPLCCLCGDVGFPAKLFRC +CSNRFQHSYCSN+YCGES D I ++CDWCR+E  T
Sbjct: 1   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHSYCSNFYCGESADPITRLCDWCRTEHTT 60

Query: 61  HRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSRPAPRRYKLLKDVMC 115
            RP+ A ANN  G  S K HK+TDQIT+ +SS  G+PS RPAPRRYKLLKDVMC
Sbjct: 61  RRPSPAAANN--GATSQKPHKMTDQITETKSSATGVPSPRPAPRRYKLLKDVMC 112

[Close]

BLAST of HG10013234 vs. NCBI nr
Match: XP_038904003.1 (uncharacterized protein LOC120090420 [Benincasa hispida])

HSP 1 Score: 186.8 bits (473), Expect = 1.0e-43
Identity = 88/115 (76.52%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRT 60
           MD NRPLCCLCGDVGF A LFRC +CSNRFQHSYCSNYYCGESGDA ++VCDWCRS+QRT
Sbjct: 1   MDFNRPLCCLCGDVGFSAHLFRCSNCSNRFQHSYCSNYYCGESGDATIKVCDWCRSDQRT 60

Query: 61  HRPASATANNNSGTMSHKDHKITD-QITQIRSSGAGLPSSRPAPRRYKLLKDVMC 115
            RP SAT          KDHKI+D QIT+ RSS AGLPS RPAPRRYKLLKDVMC
Sbjct: 61  RRPGSATT-------PQKDHKISDNQITERRSSAAGLPSPRPAPRRYKLLKDVMC 108

[Close]

BLAST of HG10013234 vs. NCBI nr
Match: XP_008437789.1 (PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 4.3e-42
Identity = 87/114 (76.32%), Postives = 92/114 (80.70%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRT 60
           MDLN PLCCLCGDVGFPA LFRC +CSNRFQHSYCSNYY GESGDAI++VCDWCRSEQRT
Sbjct: 41  MDLNPPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSGESGDAIIRVCDWCRSEQRT 100

Query: 61  HRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSRPAPRRYKLLKDVMC 115
            RPA+        T S KD K    IT+IRSS AGLPS RPAPRRYKLLKDVMC
Sbjct: 101 RRPAAFAT-----TTSQKDRK----ITEIRSSAAGLPSPRPAPRRYKLLKDVMC 145

[Close]

BLAST of HG10013234 vs. NCBI nr
Match: KAA0048831.1 (uncharacterized protein E6C27_scaffold171G00440 [Cucumis melo var. makuwa] >TYK20783.1 uncharacterized protein E5676_scaffold291G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 181.4 bits (459), Expect = 4.3e-42
Identity = 87/114 (76.32%), Postives = 92/114 (80.70%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRT 60
           MDLN PLCCLCGDVGFPA LFRC +CSNRFQHSYCSNYY GESGDAI++VCDWCRSEQRT
Sbjct: 1   MDLNPPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSGESGDAIIRVCDWCRSEQRT 60

Query: 61  HRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSRPAPRRYKLLKDVMC 115
            RPA+        T S KD K    IT+IRSS AGLPS RPAPRRYKLLKDVMC
Sbjct: 61  RRPAAFAT-----TTSQKDRK----ITEIRSSAAGLPSPRPAPRRYKLLKDVMC 105

[Close]

BLAST of HG10013234 vs. ExPASy TrEMBL
Match: A0A6J1ED69 (uncharacterized protein LOC111432109 OS=Cucurbita moschata OX=3662 GN=LOC111432109 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.7e-45
Identity = 85/114 (74.56%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRT 60
           MDLNRPLCCLCGDVGFPAKLFRC +CSNRFQHSYCSN+YCGES D I ++CDWCR+E  T
Sbjct: 1   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHSYCSNFYCGESADPITRLCDWCRTEHTT 60

Query: 61  HRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSRPAPRRYKLLKDVMC 115
            RP+ A ANN  G  S K HK+TDQIT+ +SS  G+PS RPAPRRYKLLKDVMC
Sbjct: 61  RRPSPAAANN--GATSQKPHKMTDQITETKSSATGVPSPRPAPRRYKLLKDVMC 112

[Close]

BLAST of HG10013234 vs. ExPASy TrEMBL
Match: A0A5D3DB67 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00440 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.1e-42
Identity = 87/114 (76.32%), Postives = 92/114 (80.70%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRT 60
           MDLN PLCCLCGDVGFPA LFRC +CSNRFQHSYCSNYY GESGDAI++VCDWCRSEQRT
Sbjct: 1   MDLNPPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSGESGDAIIRVCDWCRSEQRT 60

Query: 61  HRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSRPAPRRYKLLKDVMC 115
            RPA+        T S KD K    IT+IRSS AGLPS RPAPRRYKLLKDVMC
Sbjct: 61  RRPAAFAT-----TTSQKDRK----ITEIRSSAAGLPSPRPAPRRYKLLKDVMC 105

[Close]

BLAST of HG10013234 vs. ExPASy TrEMBL
Match: A0A1S3AVF1 (uncharacterized protein LOC103483122 OS=Cucumis melo OX=3656 GN=LOC103483122 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.1e-42
Identity = 87/114 (76.32%), Postives = 92/114 (80.70%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRT 60
           MDLN PLCCLCGDVGFPA LFRC +CSNRFQHSYCSNYY GESGDAI++VCDWCRSEQRT
Sbjct: 41  MDLNPPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSGESGDAIIRVCDWCRSEQRT 100

Query: 61  HRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSRPAPRRYKLLKDVMC 115
            RPA+        T S KD K    IT+IRSS AGLPS RPAPRRYKLLKDVMC
Sbjct: 101 RRPAAFAT-----TTSQKDRK----ITEIRSSAAGLPSPRPAPRRYKLLKDVMC 145

[Close]

BLAST of HG10013234 vs. ExPASy TrEMBL
Match: A0A0A0L5P1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G117940 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.7e-42
Identity = 86/114 (75.44%), Postives = 93/114 (81.58%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRT 60
           MDLN PLCCLCGDVGFPAKLFRC +CSNRFQHSYCSNYYCGESGDA ++VCDWCRSEQRT
Sbjct: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60

Query: 61  HRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSRPAPRRYKLLKDVMC 115
            RPA A+      T S K +KIT++    RSS  GLPS RPAPRRYKLLKDVMC
Sbjct: 61  CRPAFAS------TTSQKSNKITER----RSSAVGLPSPRPAPRRYKLLKDVMC 104

[Close]

BLAST of HG10013234 vs. ExPASy TrEMBL
Match: A0A6J1IH20 (uncharacterized protein LOC111472884 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472884 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 9.5e-27
Identity = 70/109 (64.22%), Postives = 79/109 (72.48%), Query Frame = 0


Query: 6   PLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPAS 65
           P+CCLCGDVGFPA LFRC  CS+RFQHSYCSNYY GES +AI +VCDWCR E+R  R  S
Sbjct: 17  PVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYY-GESAEAI-EVCDWCRCERRCGRRGS 76

Query: 66  ATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSRPAPRRYKLLKDVMC 115
           A      G  S K  K + Q  + R+SG G+PS R APRRYKLLKDVMC
Sbjct: 77  AA--RKFGVASQK--KSSGQDKRERNSG-GMPSPRVAPRRYKLLKDVMC 118

[Close]

BLAST of HG10013234 vs. TAIR 10
Match: AT3G60520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02070.1); Has 107 Blast hits to 107 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 113.2 bits (282), Expect = 1.4e-25
Identity = 63/130 (48.46%), Postives = 76/130 (58.46%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRT 60
           +DL R +CC+CGDVGF  KLF C  C NRFQHSYCS+YY  E  D I ++CDWC+ E ++
Sbjct: 2   VDLERRVCCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYY-KEQADPI-KICDWCQCEAKS 61

Query: 61  HRPASATANNNSGTMSHKD------HKITDQ-ITQIRSSG---------AGLPSSRPAPR 115
              A    N  S   S++       H+I  Q I Q  SS           G+PS RPA R
Sbjct: 62  RTGAKHGVNGGSSKRSYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGKTGVPSPRPATR 121

[Close]

BLAST of HG10013234 vs. TAIR 10
Match: AT1G02070.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60520.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 95.1 bits (235), Expect = 3.8e-20
Identity = 51/130 (39.23%), Postives = 70/130 (53.85%), Query Frame = 0


Query: 7   LCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQR------- 66
           +CC+CGDVGF  KLF C  C  RFQHSYCSNYY G+  +   ++CDWCRS+ R       
Sbjct: 4   VCCMCGDVGFSDKLFSCGHCRCRFQHSYCSNYY-GQFAEP-TEICDWCRSDDRKLSNVAR 63

Query: 67  -----THRPASATANNNSGT----------MSHKDHKITDQITQIRSSGAGLPSSRPAPR 115
                + +P+S+    N  +          + H +++       +   G G+ S + A R
Sbjct: 64  HGGSSSKKPSSSVKYENDFSNRSEYSPGHRIKHNNNRHDQVAKGVAGDGGGVTSPKTATR 123

The following BLAST results are available for this feature:

BLAST of HG10013234 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023526855.1	3.2e-45	75.44	uncharacterized protein LOC111790233 [Cucurbita pepo subsp. pepo]	[more]
XP_022924678.1	5.5e-45	74.56	uncharacterized protein LOC111432109 [Cucurbita moschata]	[more]
XP_038904003.1	1.0e-43	76.52	uncharacterized protein LOC120090420 [Benincasa hispida]	[more]
XP_008437789.1	4.3e-42	76.32	PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo]	[more]
KAA0048831.1	4.3e-42	76.32	uncharacterized protein E6C27_scaffold171G00440 [Cucumis melo var. makuwa] >TYK2...	[more]

BLAST of HG10013234 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10013234 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ED69	2.7e-45	74.56	uncharacterized protein LOC111432109 OS=Cucurbita moschata OX=3662 GN=LOC1114321...	[more]
A0A5D3DB67	2.1e-42	76.32	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AVF1	2.1e-42	76.32	uncharacterized protein LOC103483122 OS=Cucumis melo OX=3656 GN=LOC103483122 PE=...	[more]
A0A0A0L5P1	4.7e-42	75.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G117940 PE=4 SV=1	[more]
A0A6J1IH20	9.5e-27	64.22	uncharacterized protein LOC111472884 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of HG10013234 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60520.1	1.4e-25	48.46	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G02070.1	3.8e-20	39.23	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..83
None	No IPR available	PANTHER	PTHR33779:SF11	OS02G0658200 PROTEIN	coord: 6..114
None	No IPR available	PANTHER	PTHR33779	EXPRESSED PROTEIN	coord: 6..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10013234.1	HG10013234.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding