HG10013196 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10013196
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	serine/arginine-rich splicing factor RS31-like
Location	Chr01: 27674922 .. 27679401 (-)
RNA-Seq Expression	HG10013196
Synteny	HG10013196

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATACTTTAACAACAACCTCTGTTTCAACTCTCAGAGTTCCATCAACCCTAACTTCATCTCGCGACCTTCTCCACCTCAAGAATCCCACCGCTCATCTCCCTCATCGCTCCCCTTCTCGTACATCCAACTCAATCTCAAAACCCCCTAATTTTCTCTCCACTCACAAAACCCTAAATCCCCTCCCGTTTTCCTCCTCCCCCCGCCGCTCCTCTTCTCCGCTCCTCCACCGCCGCCCCGCCGCAGGATACGCCGCCGCACTCGTCGACGCATCTCAATCCACCGGAGCGATTCACTCAGTGGCGAAGGACGTCGGGAGATTCTCGAAGCTGCTGAGAGGGAAGCGAATCGGAGGGATTTTGAACGACCCGTTGGTCGGGGAGGAGGAGAAAGGGCGACTGGTGAGGGAAATTTCAGTGAAGGAAGGGTTTGAGAGGCAGGTGGTGAGGTTGACGAAGTTGCTGATTGAGAAGAAGAAACTGGTGCTTTTTTGACAGGGGGTTGAGCGAATTCGAGAGGATTTATGATGAGCTTTGTGGAACTGAAGTGGTGATGGTTTCTTCGAGCAAGAAGATGAAGGAAGAGGAGTTGTTTGAGATTGGGAAGAATGTGCAGAGGTTGAGTGGGGCTGTGAAAGTGAAGGTCAGAAGCTTCGTTCATGGCGGATTAAGGGCGTAAATACAATTTGTTGGCTATGGCTATGACGTTTGTAACTCATATGAACCATTACAATTTACAAAGATTTCAAAATGCTGTTATTCAAACAGAATTGTTCAATTAAAGTTCATAGGTACAATCATCACTCATAACATCAAATGATAGACGATACGGCAATTTTGATTGTGTAATTCAAATAGTTGAAATTCTTGCAACAAGATTTTTAGCTTTTTATTTTAGGAAATTTTTTAAAATAAAAAAATAAGGAAACTATTTACCTAAAATAGCAAAAGTTTTAGATAGTTGTGATCTGTCTATCATAGAAATGATAGAAATCTATCACAGATAGATGCGAATAGAAGTCTATCCATATCTATTCGTTATTTTTTTTAAAAATAATTTGATATTTTTTCTATAGGTAAATTTTTTTCTTTATTTTATTGAATCTTAAATAAGTAATTTTATAATTTAGAGTTAATATATTATACAAATCATGTAATATTGTAAAACTACATTTAATATATTATAAATAATGTAATATTGTAATCACAATAATATCTTCATAGTGTAGCTAATACCAATTTATATTCTAACCTAATACCAATTTATAGTTAATATATTGGGCCTTCTTCCACTTAAAGCCCAATCTATCTCATCCTTCTCAAAAATTTAAATCCCCGAAGTACCCTTTTGGCAGTCTTAACGGTGAAATCTTTGTTGATGAAAGTCTTCCATGGGAAAGTCAGACAATCAGACGGTCTAAAAATAACAGCATCAACAGTAGCGCTCTTCTTTCGCTGTTTAAAATGAATCGAATTGCGTCATTATTCATTAGGGCTTCGTGAAAAAGACCCAGCCTTTCTCTTCCTCTCTCCTAGGGTTTCTCTGCTCTGTTCGAATCCGAGAATCTGCGAGGTTTGTTCTCTTTAAATCCTTTGATAATTGATCCATGCCGTTCTATGTTTCTTCATATGCTACTTGGTCGTTTTATTTTTGGTTTCTGGTCAAACCCCGAAACTAAGTTCTTCGTTTGTGCTTTTTTCCTTTCCTCCCTCTAATCCCATTTACCTCTTATGGTCTGATTGGAAAGAAAATAGCTTCAATCATGTCGATGAATTTGTAGATCATTTTGTTTTATGGAGAAAGCTGTTATTTTTTTCACACGTCATTTTATTAATGTTCGAACTTATTGGCTTCGCTTTGTTTCTACAGTGCGATTATTAGTAGCAACGATGAGGCCGATATTTGTTGGAAACTTTGGGTATGACACCCGGCAATCTGAGCTGGAGCGTTTATTCGCCAAATATGGGAGAGTTGAAAGGATCGACATGAAATCTGGTATGTTCCAATTTCTTTGTTCTAGTATGCAATGCCATTTTTAACGAACATGTTATAAAATTGGTCATAACTTGTGCTGATTATATTGTACGAAGGATCCCTTTTTGTGGTCAGCTTCGAGCAAATTGATTATGTTGAATATTGCTCTTAAAACCTTTTTTGGGTATTGCCAATGGTGTAATGAGTGGGTTGCAATGCTTGCTTAATTTATTTTTTGTTCAATGTGAAATTGTATCAAGATAATAGATTGTACCAAAAGGATCATCTTCATTTTGGTTAAGTTCATACGCATTGGACGGTGCATTTTGGATTATTGGTGTATGTTTTAATTTAAAATCTTTGATGTGCCCTAAGAATCATACTCCTCTTGTTGTGTGTCGAGTGTGGTAGGCTCACAAGTGTCTGTATGTATGCATTGATGGATGACACTTTGGTGTTGGTTTTACTTAGTATTGGCAAGTAGTATTCCTACTTTTAAGCTTCCTAGTTTGGAATTTTTTTTGTTACATGTGGACTTTTGTACTTTGATTTCATCATTCGAATCATCTTACCTTTTCCTTGTTAACTGACCTTGTTTACTCTGGGTATGAGTTTTTAATGATGTTTATTTTCTGGAAAATTTCCTTGGCCCTCACCCACCTTGCCTAACATCCTTGGTCCTGCAAAGTTATATTTCAAATAATGATTTTGGACATTTTTGGGTATAGGGGCTTACTGAATTATGGTATCTTAGTAAGAGGCTGCTCCACTGATACTAACATTAAGTGTTAAAGTAATATCACTTTTTTTTTATCCAATAATACTAAAATTGATGTTTTTTAAATAATAAAATCCAGTTCAGTGACATGGATGCATAGCTATTATGCTATGAATGACATCCAGTGGTCCATTTTTCTGATGAAAACTTAATGGCAGGCACAATTGCTATTTTTATGGGGAAAACCTCCATATAAGATGTTTCTTTTGACGCAGGAATTTCTTCTAAGGAAAATGAGCCAAGCTCCTATCTGGGCTCACCACCATGACACCATCTGTGCATAAAAATTAATTTGGAAGGAAACTTCCTGCTTGACTGCTTAGCTTCACCTACAGATAGCATCATCCTGATTTTTCTTCAATCAATCATCAATCATCATTCATCTACCTCATCACTTAAGTTGCAATACACCAGAATCGTCTTAATGGATTGATCTTTATCTCATGCCTCATCAATTAAGTTGCAATTCATCAGAATCGTGTTTATGGATTGATCTTTTTCTCACTTGCTAGCTTCACCAATGATCATAGGACATCACTGAAATCTGATCATGCCTTCCATATGATAATAGTGGCTGAATGAAATCTGTCATGCCATGCCTTCTATTTCTGAACTCGTGCTGTGTGAAAGGCGAAGGATAGTTGAAATTTTGGATTAAAACCTTTAGTAGGCAACCATCTTAGTCCATCATGCAACGTCTCTACCGCTATATGTGCATCAGTCCTCCCGTATTTGCAGGTGTTGTATTTTTTATAGTTTATCCTAGGGAAAGAAATCACAAGGCTGAGTGACAATACCTGCTAAATGGATGATGCTTCAATAGCTTACCAGTTTTGTATATCTAATTGTTATTATTTGGCAGGTTTTGCCTTTGTTTACTTTGAAGATGAGAGGGATGCTGAAGATGCCATTCGGGGACTTGATAACTTGCCATTTGGTTATGATAGACGCAGATTGTCTGTGGAATGGGCTAGGGTAGACCTCTCTCACTACCTTCTTCTTTCCCTCCTTGTCCTTCCTTTTGGGTTTATGCATTTTAGAAGCTGGTTTATTTCATGTTCTGAAGATGGGCCATTTTATTCTAACTTATGGTTTGGATGGATAAGGGTGAACGAGGTCGTCATCGTGATGGGTCCAAGTCAATGGCAAATCAGAGGCCAACAAAAACCCTGTTTGTGATCAATTTTGACCCGATTCGGACAAGAGTTCGTGATATTGAAAGACACTTTGAACCTTATGGGAAGGTGCTCAATGTTCGCATTAGAAGGAACTTTGCATTTGTACAATTTGAGACGCAGGAGGATGCAACTAAAGCCCTTGAGTGTACTCACATGAGGTAAGCCGGGTTCTGATTCTCCTGCATGCTTTCTCTTTTCATTTGGTGTATTTATTTTCTTCTCTCTTATGGACGTGAAGTATTGTATTGTGCCTTGCAATTTTGCAGCAAAATATTAGACAGGGTTGTGTCAGTTGAATATGCTTTGAGGGATGACGGTGAGAGGGGTGATCCTTTTGATGAAAGCCCTCGAAGAGCAGGTTATGGGCGACCAGGGGATAGTCCCTACCGGAGGTCACCTAGTCCTGTGTTTCGCCGTCGGCCAAGTCCGGACTATGGGCGAGCTCGTAGCCCTGCTTATGATAGGTATAATGGGCCTTATGAACGACGTAGGAGTCCTGATTATGGTAGGAACCGAAGCCCTGAATATGGTGGTAGATTTCGCAGGTAA

mRNA sequence

ATGGATACTTTAACAACAACCTCTGTTTCAACTCTCAGAGTTCCATCAACCCTAACTTCATCTCGCGACCTTCTCCACCTCAAGAATCCCACCGCTCATCTCCCTCATCGCTCCCCTTCTCGTACATCCAACTCAATCTCAAAACCCCCTAATTTTCTCTCCACTCACAAAACCCTAAATCCCCTCCCGTTTTCCTCCTCCCCCCGCCGCTCCTCTTCTCCGCTCCTCCACCGCCGCCCCGCCGCAGGATACGCCGCCGCACTCGTCGACGCATCTCAATCCACCGGAGCGATTCACTCAGTGGCGAAGGACGTCGGGAGATTCTCGAAGCTGCTGAGAGGGAAGCGAATCGGAGGGATTTTGAACGACCCGTTGGTCGGGGAGGAGGAGAAAGGGCGACTGGTGAGGGAAATTTCAGTGAAGGAAGGGGGGTTGAGCGAATTCGAGAGGATTTATGATGAGCTTTGTGGAACTGAAGTGGTGATGGTTTCTTCGAGCAAGAAGATGAAGGAAGAGGAGTTGTTTGAGATTGGGAAGAATGTGCAGAGGTTGAGTGGGGCTGTGAAAGTGAAGGGTTTCTCTGCTCTGTTCGAATCCGAGAATCTGCGAGTGCGATTATTAGTAGCAACGATGAGGCCGATATTTGTTGGAAACTTTGGGTATGACACCCGGCAATCTGAGCTGGAGCGTTTATTCGCCAAATATGGGAGAGTTGAAAGGATCGACATGAAATCTGGTTTTGCCTTTGTTTACTTTGAAGATGAGAGGGATGCTGAAGATGCCATTCGGGGACTTGATAACTTGCCATTTGGTTATGATAGACGCAGATTGTCTGTGGAATGGGCTAGGGGTGAACGAGGTCGTCATCGTGATGGGTCCAAGTCAATGGCAAATCAGAGGCCAACAAAAACCCTGTTTGTGATCAATTTTGACCCGATTCGGACAAGAGTTCGTGATATTGAAAGACACTTTGAACCTTATGGGAAGGTGCTCAATGTTCGCATTAGAAGGAACTTTGCATTTGTACAATTTGAGACGCAGGAGGATGCAACTAAAGCCCTTGAGTGTACTCACATGAGCAAAATATTAGACAGGGTTGTGTCAGTTGAATATGCTTTGAGGGATGACGGTGAGAGGGGTGATCCTTTTGATGAAAGCCCTCGAAGAGCAGGTTATGGGCGACCAGGGGATAGTCCCTACCGGAGGTCACCTAGTCCTGTGTTTCGCCGTCGGCCAAGTCCGGACTATGGGCGAGCTCGTAGCCCTGCTTATGATAGGTATAATGGGCCTTATGAACGACGTAGGAGTCCTGATTATGGTAGGAACCGAAGCCCTGAATATGGTGGTAGATTTCGCAGGTAA

Coding sequence (CDS)

ATGGATACTTTAACAACAACCTCTGTTTCAACTCTCAGAGTTCCATCAACCCTAACTTCATCTCGCGACCTTCTCCACCTCAAGAATCCCACCGCTCATCTCCCTCATCGCTCCCCTTCTCGTACATCCAACTCAATCTCAAAACCCCCTAATTTTCTCTCCACTCACAAAACCCTAAATCCCCTCCCGTTTTCCTCCTCCCCCCGCCGCTCCTCTTCTCCGCTCCTCCACCGCCGCCCCGCCGCAGGATACGCCGCCGCACTCGTCGACGCATCTCAATCCACCGGAGCGATTCACTCAGTGGCGAAGGACGTCGGGAGATTCTCGAAGCTGCTGAGAGGGAAGCGAATCGGAGGGATTTTGAACGACCCGTTGGTCGGGGAGGAGGAGAAAGGGCGACTGGTGAGGGAAATTTCAGTGAAGGAAGGGGGGTTGAGCGAATTCGAGAGGATTTATGATGAGCTTTGTGGAACTGAAGTGGTGATGGTTTCTTCGAGCAAGAAGATGAAGGAAGAGGAGTTGTTTGAGATTGGGAAGAATGTGCAGAGGTTGAGTGGGGCTGTGAAAGTGAAGGGTTTCTCTGCTCTGTTCGAATCCGAGAATCTGCGAGTGCGATTATTAGTAGCAACGATGAGGCCGATATTTGTTGGAAACTTTGGGTATGACACCCGGCAATCTGAGCTGGAGCGTTTATTCGCCAAATATGGGAGAGTTGAAAGGATCGACATGAAATCTGGTTTTGCCTTTGTTTACTTTGAAGATGAGAGGGATGCTGAAGATGCCATTCGGGGACTTGATAACTTGCCATTTGGTTATGATAGACGCAGATTGTCTGTGGAATGGGCTAGGGGTGAACGAGGTCGTCATCGTGATGGGTCCAAGTCAATGGCAAATCAGAGGCCAACAAAAACCCTGTTTGTGATCAATTTTGACCCGATTCGGACAAGAGTTCGTGATATTGAAAGACACTTTGAACCTTATGGGAAGGTGCTCAATGTTCGCATTAGAAGGAACTTTGCATTTGTACAATTTGAGACGCAGGAGGATGCAACTAAAGCCCTTGAGTGTACTCACATGAGCAAAATATTAGACAGGGTTGTGTCAGTTGAATATGCTTTGAGGGATGACGGTGAGAGGGGTGATCCTTTTGATGAAAGCCCTCGAAGAGCAGGTTATGGGCGACCAGGGGATAGTCCCTACCGGAGGTCACCTAGTCCTGTGTTTCGCCGTCGGCCAAGTCCGGACTATGGGCGAGCTCGTAGCCCTGCTTATGATAGGTATAATGGGCCTTATGAACGACGTAGGAGTCCTGATTATGGTAGGAACCGAAGCCCTGAATATGGTGGTAGATTTCGCAGGTAA

Protein sequence

MDTLTTTSVSTLRVPSTLTSSRDLLHLKNPTAHLPHRSPSRTSNSISKPPNFLSTHKTLNPLPFSSSPRRSSSPLLHRRPAAGYAAALVDASQSTGAIHSVAKDVGRFSKLLRGKRIGGILNDPLVGEEEKGRLVREISVKEGGLSEFERIYDELCGTEVVMVSSSKKMKEEELFEIGKNVQRLSGAVKVKGFSALFESENLRVRLLVATMRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRAGYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPEYGGRFRR

Homology

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BLAST of HG10013196 vs. NCBI nr
Match: KAG6597062.1 (Serine/arginine-rich splicing factor RS31, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 712.2 bits (1837), Expect = 2.8e-201
Identity = 393/540 (72.78%), Postives = 422/540 (78.15%), Query Frame = 0


Query: 1   MDTLTTTSVSTLRVPSTLTSSRDLLHLKNPTAHLPHRSPSRTSNSISKPPNFLSTHKTLN 60
           MDTL T+SVSTLRVPSTL SSRDLLHLKN +AHLPHRSPSR SNSISKPPNFLSTHKTLN
Sbjct: 1   MDTL-TSSVSTLRVPSTLASSRDLLHLKNYSAHLPHRSPSRRSNSISKPPNFLSTHKTLN 60

Query: 61  PLPF-----SSSPRRSSSPLLHRRPAAGYAAALVDASQSTGAIHSVAKDVGRFSKLLRGK 120
           PLPF     SSSPRRSSSPLLHRRPAAGYAAALVDASQ+TG+IHSVAKDVGRFSK+LR K
Sbjct: 61  PLPFSSSFSSSSPRRSSSPLLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVLRTK 120

Query: 121 RIGGILNDPLVGEEEKGRLVREISVKEG-----------------------GLSEFERIY 180
           RIGG LNDP V EEEKGRLVREI+ K G                        LSEFERIY
Sbjct: 121 RIGGFLNDPFVVEEEKGRLVREIAAKGGFEKQVVKLTKMLIEKKRLGILNEVLSEFERIY 180

Query: 181 DELCGTEVVMVSSSKKMKEEELFEIGKNVQRL------SGAVKVKGFSAL---------- 240
           DELCGTEVV+VSS++KM+E+ELF I KNVQRL      +G    +GF  L          
Sbjct: 181 DELCGTEVVLVSSNRKMQEQELFGIAKNVQRLKALKIRAGTGNCRGFRILGPATWGAALE 240

Query: 241 --------------------------------------------FESENLRVRLLVATMR 300
                                                       FES+NL+ RL+V+TM+
Sbjct: 241 LFDRMPMTWVVSWTAIGIMGLLRWALQKDTGFLFLFLSPRVFLVFESKNLQARLIVSTMK 300

Query: 301 PIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPFGY 360
           PIFVGNFGYDTRQSELER FAKYGRV+RIDMKSGFAFVYFEDERDA+DAIRGLDN+PFG+
Sbjct: 301 PIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPFGH 360

Query: 361 DRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLN 420
           DRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPI TRVRDIERHFEPYGKVLN
Sbjct: 361 DRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKVLN 420

Query: 421 VRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRAGY 453
           VRIRRNF+FVQFETQE+ATKALECTHMSKILDRVVSVEYALRDDGERGDP+D+SPRR  Y
Sbjct: 421 VRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRTAY 480

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BLAST of HG10013196 vs. NCBI nr
Match: KAE8650222.1 (hypothetical protein Csa_011015 [Cucumis sativus])

HSP 1 Score: 706.8 bits (1823), Expect = 1.2e-199
Identity = 366/420 (87.14%), Postives = 379/420 (90.24%), Query Frame = 0


Query: 57  KTLNPLPFSSSPRRSSSPLLHRRPAAGYAAALVDASQSTGAIHSVAKDVGRFSKLLRGKR 116
           K+L+PL     PRRSSSPLLHRRPA+GYAAAL+DASQSTG IHSVAKDVGRFSKLLRGKR
Sbjct: 507 KSLHPL---FHPRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVGRFSKLLRGKR 566

Query: 117 IGGILNDPLVGEEEKGRLVREISVKEG-----------------------GLSEFERIYD 176
           IG +LNDPLVG+EEKGRLV+EI+VK G                         SEFER+YD
Sbjct: 567 IGRVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKSKLSILTEVFSEFERVYD 626

Query: 177 ELCGTEVVMVSSSKKMKEEELFEIGKNVQRLSGAVKVKGFSALFESENLRVRLLVATMRP 236
           ELCGTEVVMVSSSKKM+EEEL  I KNVQRLSGA+KVKGFS LFESENL+VR  VATMRP
Sbjct: 627 ELCGTEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKGFSVLFESENLQVRSFVATMRP 686

Query: 237 IFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPFGYD 296
           IFVGNFGYDTRQSELERLF+KYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPFGYD
Sbjct: 687 IFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPFGYD 746

Query: 297 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNV 356
           RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNV
Sbjct: 747 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNV 806

Query: 357 RIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA-GY 416
           RIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA GY
Sbjct: 807 RIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRAGGY 866

Query: 417 GRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPEYGGRFR 453
           GRPGDSPYRRSPSPVFRRRPSPDYGRA SPAYDRYNGPYERRRSPDYGRNRSPEYGGRFR
Sbjct: 867 GRPGDSPYRRSPSPVFRRRPSPDYGRAHSPAYDRYNGPYERRRSPDYGRNRSPEYGGRFR 923

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BLAST of HG10013196 vs. NCBI nr
Match: XP_038893478.1 (serine/arginine-rich splicing factor RS31 isoform X1 [Benincasa hispida])

HSP 1 Score: 489.6 bits (1259), Expect = 3.0e-134
Identity = 242/243 (99.59%), Postives = 242/243 (99.59%), Query Frame = 0


Query: 211 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 270
           MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF
Sbjct: 1   MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 60

Query: 271 GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 330
           GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 120

Query: 331 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 390
           LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA
Sbjct: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 180

Query: 391 GYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPEY-GG 450
           GYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPEY GG
Sbjct: 181 GYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPEYGGG 240

Query: 451 RFR 453
           RFR
Sbjct: 241 RFR 243

[Close]

BLAST of HG10013196 vs. NCBI nr
Match: XP_004133800.1 (serine/arginine-rich splicing factor RS31 isoform X1 [Cucumis sativus] >XP_008437857.1 PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Cucumis melo] >KAA0048868.1 serine/arginine-rich splicing factor RS31 isoform X2 [Cucumis melo var. makuwa] >TYK20820.1 serine/arginine-rich splicing factor RS31 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 486.5 bits (1251), Expect = 2.5e-133
Identity = 240/243 (98.77%), Postives = 241/243 (99.18%), Query Frame = 0


Query: 211 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 270
           MRPIFVGNFGYDTRQSELERLF+KYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF
Sbjct: 1   MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 60

Query: 271 GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 330
           GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 120

Query: 331 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 390
           LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA
Sbjct: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 180

Query: 391 -GYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPEYGG 450
            GYGRPGDSPYRRSPSPVFRRRPSPDYGRA SPAYDRYNGPYERRRSPDYGRNRSPEYGG
Sbjct: 181 GGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPAYDRYNGPYERRRSPDYGRNRSPEYGG 240

Query: 451 RFR 453
           RFR
Sbjct: 241 RFR 243

[Close]

BLAST of HG10013196 vs. NCBI nr
Match: XP_022147391.1 (serine/arginine-rich splicing factor RS31-like isoform X1 [Momordica charantia])

HSP 1 Score: 473.4 bits (1217), Expect = 2.2e-129
Identity = 236/243 (97.12%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 211 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 270
           MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDN+ F
Sbjct: 1   MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNMAF 60

Query: 271 GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 330
           GYDRRRLSVEWARGERGRHRDGSKS+ANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWARGERGRHRDGSKSIANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 120

Query: 331 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 390
           LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA
Sbjct: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 180

Query: 391 GYGRPGD-SPYRRSPSPVFRRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPEYGG 450
            YGRPGD SPYRRSPSP FRRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPEY G
Sbjct: 181 AYGRPGDSSPYRRSPSPAFRRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPEY-G 240

Query: 451 RFR 453
           RFR
Sbjct: 241 RFR 242

[Close]

BLAST of HG10013196 vs. ExPASy Swiss-Prot
Match: P92964 (Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana OX=3702 GN=RS31 PE=1 SV=2)

HSP 1 Score: 345.9 bits (886), Expect = 6.9e-94
Identity = 182/244 (74.59%), Postives = 201/244 (82.38%), Query Frame = 0


Query: 211 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 270
           MRP+FVGNF Y+TRQS+LERLF KYGRV+R+DMKSG+AFVYFEDERDAEDAIR LDN PF
Sbjct: 1   MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60

Query: 271 GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 330
           GY++RRLSVEWA+GERGR R  +K+ +N +PTKTLFVINFDPIRT+  DIE+HFEPYGKV
Sbjct: 61  GYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKV 120

Query: 331 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGD-PFDESPRR 390
            NVRIRRNF+FVQFETQEDATKALE T  SKILDRVVSVEYAL+DD ER D     SPRR
Sbjct: 121 TNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERDDRNGGRSPRR 180

Query: 391 A---GYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRYNGP--YERRRSPDYGRNRS 449
           +    Y R     Y R PSP   RRPSPDYGRARSP YDRY GP  YERRRSPDYGR RS
Sbjct: 181 SLSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRARSPEYDRYKGPAAYERRRSPDYGR-RS 240

[Close]

BLAST of HG10013196 vs. ExPASy Swiss-Prot
Match: Q9ZPX8 (Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana OX=3702 GN=RS31A PE=1 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 1.6e-90
Identity = 176/243 (72.43%), Postives = 200/243 (82.30%), Query Frame = 0


Query: 211 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 270
           MR ++VGNF YDTR S+LERLF+K+GRV+R+DMKSG+AFVYFEDERDAEDAIR  DN  F
Sbjct: 1   MRHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTF 60

Query: 271 GYDRRRLSVEWAR---GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPY 330
           GY RR+LSVEWA+   GERG+ RDG K+++NQRPTKTLFVINFDPIRTR RD+ERHFEPY
Sbjct: 61  GYGRRKLSVEWAKDFQGERGKPRDG-KAVSNQRPTKTLFVINFDPIRTRERDMERHFEPY 120

Query: 331 GKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESP 390
           GKVLNVR+RRNFAFVQF TQEDATKAL+ TH SK+LD+VVSVEYALR+ GER D +  S 
Sbjct: 121 GKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALREAGEREDRYAGSR 180

Query: 391 RRAGYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRYNG--PYERRRSPDYGRNRSP 449
           R            RRSPSPV+RRRPSPDY R RSP YDRY G  PYERR+SPDYGR RS 
Sbjct: 181 R------------RRSPSPVYRRRPSPDYTRRRSPEYDRYKGPAPYERRKSPDYGR-RSS 229

[Close]

BLAST of HG10013196 vs. ExPASy Swiss-Prot
Match: P92966 (Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana OX=3702 GN=RS41 PE=1 SV=2)

HSP 1 Score: 265.8 bits (678), Expect = 9.1e-70
Identity = 139/236 (58.90%), Postives = 169/236 (71.61%), Query Frame = 0


Query: 211 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 270
           M+P+F GNF YD R+S+LERLF KYG+VER+DMK+GFAFVY EDERDAEDAIR LD   +
Sbjct: 1   MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60

Query: 271 GYDRRRLSVEWARGER---GRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPY 330
           G   RRL VEW + +R   GR     +S +  RP+KTLFVINFD   TR RD+ERHFEPY
Sbjct: 61  GRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPY 120

Query: 331 GKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESP 390
           GK++NVRIRRNFAF+Q+E QEDAT+AL+ T+ SK++D+V+SVEYA++DD  RG+ +    
Sbjct: 121 GKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPER 180

Query: 391 RRAGYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNR 444
           RR    R  D   RRSPSP  R R SPDYGR  SP   +       R SPDYGR R
Sbjct: 181 RR---DRSPDR-RRRSPSPYRRERGSPDYGRGASPVAHK-----RERTSPDYGRGR 227

[Close]

BLAST of HG10013196 vs. ExPASy Swiss-Prot
Match: P92965 (Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana OX=3702 GN=RS40 PE=1 SV=2)

HSP 1 Score: 265.0 bits (676), Expect = 1.6e-69
Identity = 146/249 (58.63%), Postives = 177/249 (71.08%), Query Frame = 0


Query: 211 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 270
           M+P+F GNF YD R+ +LERLF KYG+VER+DMK+GFAFVY EDERDAEDAIR LD   F
Sbjct: 1   MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60

Query: 271 GYDRRRLSVEWARGERG---RHRDGS-KSMANQRPTKTLFVINFDPIRTRVRDIERHFEP 330
           G   RRL VEW + ERG   R   GS +S ++ RP+KTLFVINFD   TR RD+E+HFEP
Sbjct: 61  GRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEP 120

Query: 331 YGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDES 390
           YGK++NVRIRRNFAF+Q+E QEDAT+AL+ ++ SK++D+V+SVEYA++DD  RG+    S
Sbjct: 121 YGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGN--GHS 180

Query: 391 PRRAGYGRPGDSPYRRSPSPVFRRRPSPDYGRARSP--AYDRYNGPYERRRSPDYGRNRS 450
           P R     P     RRSPSP  R R SPDYGR  SP  AY +       R SPDYGR RS
Sbjct: 181 PERRRDRSP--ERRRRSPSPYKRERGSPDYGRGASPVAAYRK------ERTSPDYGRRRS 239

Query: 451 PEYGGRFRR 454
           P    + RR
Sbjct: 241 PSPYKKSRR 239

[Close]

BLAST of HG10013196 vs. ExPASy Swiss-Prot
Match: Q9NEW6 (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans OX=6239 GN=rsp-3 PE=1 SV=2)

HSP 1 Score: 86.7 bits (213), Expect = 7.6e-16
Identity = 81/258 (31.40%), Postives = 111/258 (43.02%), Query Frame = 0


Query: 214 IFVGNFGYDTRQSELERLFAKYGRVERIDMKSG----FAFVYFEDERDAEDAIRGLDNLP 273
           ++VGN   D R+ E+E +F KYGR++ +D+KSG    FAFV FED RDAEDA+R  D   
Sbjct: 11  VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDG-- 70

Query: 274 FGYDRRRLSVEWARG------------ERGRH--------RDGSKSMANQRPTKTLFVIN 333
           + +D RR+ VE+ RG            + G H        R G +    QR T    ++ 
Sbjct: 71  YEFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVE 130

Query: 334 FDPIRTRVRDIERHFEPYGKVLNVRIRRN-FAFVQFETQEDATKALECTHMSKILDRVVS 393
             P     +D++ H    G V    + R+    V+F   ED   A+     +K       
Sbjct: 131 GLPPTGSWQDLKDHMRDAGDVCYADVARDGTGVVEFTRYEDVKYAVRKLDDTKFRSHEGE 190

Query: 394 VEY-ALRDDGERGDPFDESPRRAGYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRY 446
             Y  +R+D   G          G    G     RS SP   RR SP Y   RS +  R 
Sbjct: 191 TAYIRVREDNSSG----------GGSGGGGRDRSRSRSPRAERRASPKYSPRRSRSRSR- 250

[Close]

BLAST of HG10013196 vs. ExPASy TrEMBL
Match: A0A5D3DBI0 (Serine/arginine-rich splicing factor RS31 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00820 PE=4 SV=1)

HSP 1 Score: 486.5 bits (1251), Expect = 1.2e-133
Identity = 240/243 (98.77%), Postives = 241/243 (99.18%), Query Frame = 0


Query: 211 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 270
           MRPIFVGNFGYDTRQSELERLF+KYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF
Sbjct: 1   MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 60

Query: 271 GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 330
           GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 120

Query: 331 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 390
           LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA
Sbjct: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 180

Query: 391 -GYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPEYGG 450
            GYGRPGDSPYRRSPSPVFRRRPSPDYGRA SPAYDRYNGPYERRRSPDYGRNRSPEYGG
Sbjct: 181 GGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPAYDRYNGPYERRRSPDYGRNRSPEYGG 240

Query: 451 RFR 453
           RFR
Sbjct: 241 RFR 243

[Close]

BLAST of HG10013196 vs. ExPASy TrEMBL
Match: A0A0A0L8H4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119350 PE=4 SV=1)

HSP 1 Score: 486.5 bits (1251), Expect = 1.2e-133
Identity = 240/243 (98.77%), Postives = 241/243 (99.18%), Query Frame = 0


Query: 211 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 270
           MRPIFVGNFGYDTRQSELERLF+KYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF
Sbjct: 1   MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 60

Query: 271 GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 330
           GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 120

Query: 331 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 390
           LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA
Sbjct: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 180

Query: 391 -GYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPEYGG 450
            GYGRPGDSPYRRSPSPVFRRRPSPDYGRA SPAYDRYNGPYERRRSPDYGRNRSPEYGG
Sbjct: 181 GGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPAYDRYNGPYERRRSPDYGRNRSPEYGG 240

Query: 451 RFR 453
           RFR
Sbjct: 241 RFR 243

[Close]

BLAST of HG10013196 vs. ExPASy TrEMBL
Match: A0A1S3AUZ7 (serine/arginine-rich splicing factor RS31-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483164 PE=4 SV=1)

HSP 1 Score: 486.5 bits (1251), Expect = 1.2e-133
Identity = 240/243 (98.77%), Postives = 241/243 (99.18%), Query Frame = 0


Query: 211 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 270
           MRPIFVGNFGYDTRQSELERLF+KYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF
Sbjct: 1   MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 60

Query: 271 GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 330
           GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 120

Query: 331 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 390
           LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA
Sbjct: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 180

Query: 391 -GYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPEYGG 450
            GYGRPGDSPYRRSPSPVFRRRPSPDYGRA SPAYDRYNGPYERRRSPDYGRNRSPEYGG
Sbjct: 181 GGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPAYDRYNGPYERRRSPDYGRNRSPEYGG 240

Query: 451 RFR 453
           RFR
Sbjct: 241 RFR 243

[Close]

BLAST of HG10013196 vs. ExPASy TrEMBL
Match: A0A6J1D279 (serine/arginine-rich splicing factor RS31-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016334 PE=4 SV=1)

HSP 1 Score: 473.4 bits (1217), Expect = 1.1e-129
Identity = 236/243 (97.12%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 211 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 270
           MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDN+ F
Sbjct: 1   MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNMAF 60

Query: 271 GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 330
           GYDRRRLSVEWARGERGRHRDGSKS+ANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWARGERGRHRDGSKSIANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 120

Query: 331 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 390
           LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA
Sbjct: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 180

Query: 391 GYGRPGD-SPYRRSPSPVFRRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPEYGG 450
            YGRPGD SPYRRSPSP FRRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPEY G
Sbjct: 181 AYGRPGDSSPYRRSPSPAFRRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPEY-G 240

Query: 451 RFR 453
           RFR
Sbjct: 241 RFR 242

[Close]

BLAST of HG10013196 vs. ExPASy TrEMBL
Match: A0A6J1ECU9 (serine/arginine-rich splicing factor RS31-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111432011 PE=4 SV=1)

HSP 1 Score: 459.5 bits (1181), Expect = 1.6e-125
Identity = 224/238 (94.12%), Postives = 232/238 (97.48%), Query Frame = 0


Query: 211 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 270
           MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFE+ERDAED+IR LDN+PF
Sbjct: 1   MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEEERDAEDSIRSLDNMPF 60

Query: 271 GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 330
           GYDRRRLSVEWARGERGR RDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWARGERGRSRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 120

Query: 331 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 390
           LNVRIRRNFAFVQFETQE+ATKALECTHMSKILDRVVSVEYALRDDGERGD +D+SPRRA
Sbjct: 121 LNVRIRRNFAFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDHYDDSPRRA 180

Query: 391 GYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPEYG 449
            YGR GDSPYRRSPSPV+ RRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSP+YG
Sbjct: 181 AYGRLGDSPYRRSPSPVYHRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPDYG 238

[Close]

BLAST of HG10013196 vs. TAIR 10
Match: AT3G61860.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 345.9 bits (886), Expect = 4.9e-95
Identity = 182/244 (74.59%), Postives = 201/244 (82.38%), Query Frame = 0


Query: 211 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 270
           MRP+FVGNF Y+TRQS+LERLF KYGRV+R+DMKSG+AFVYFEDERDAEDAIR LDN PF
Sbjct: 1   MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60

Query: 271 GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 330
           GY++RRLSVEWA+GERGR R  +K+ +N +PTKTLFVINFDPIRT+  DIE+HFEPYGKV
Sbjct: 61  GYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKV 120

Query: 331 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGD-PFDESPRR 390
            NVRIRRNF+FVQFETQEDATKALE T  SKILDRVVSVEYAL+DD ER D     SPRR
Sbjct: 121 TNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERDDRNGGRSPRR 180

Query: 391 A---GYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRYNGP--YERRRSPDYGRNRS 449
           +    Y R     Y R PSP   RRPSPDYGRARSP YDRY GP  YERRRSPDYGR RS
Sbjct: 181 SLSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRARSPEYDRYKGPAAYERRRSPDYGR-RS 240

[Close]

BLAST of HG10013196 vs. TAIR 10
Match: AT2G46610.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 334.7 bits (857), Expect = 1.1e-91
Identity = 176/243 (72.43%), Postives = 200/243 (82.30%), Query Frame = 0


Query: 211 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 270
           MR ++VGNF YDTR S+LERLF+K+GRV+R+DMKSG+AFVYFEDERDAEDAIR  DN  F
Sbjct: 1   MRHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTF 60

Query: 271 GYDRRRLSVEWAR---GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPY 330
           GY RR+LSVEWA+   GERG+ RDG K+++NQRPTKTLFVINFDPIRTR RD+ERHFEPY
Sbjct: 61  GYGRRKLSVEWAKDFQGERGKPRDG-KAVSNQRPTKTLFVINFDPIRTRERDMERHFEPY 120

Query: 331 GKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESP 390
           GKVLNVR+RRNFAFVQF TQEDATKAL+ TH SK+LD+VVSVEYALR+ GER D +  S 
Sbjct: 121 GKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALREAGEREDRYAGSR 180

Query: 391 RRAGYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRYNG--PYERRRSPDYGRNRSP 449
           R            RRSPSPV+RRRPSPDY R RSP YDRY G  PYERR+SPDYGR RS 
Sbjct: 181 R------------RRSPSPVYRRRPSPDYTRRRSPEYDRYKGPAPYERRKSPDYGR-RSS 229

[Close]

BLAST of HG10013196 vs. TAIR 10
Match: AT2G46610.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 280.4 bits (716), Expect = 2.5e-75
Identity = 151/213 (70.89%), Postives = 171/213 (80.28%), Query Frame = 0


Query: 241 IDMKSGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWAR---GERGRHRDGSKSMA 300
           + + +G+AFVYFEDERDAEDAIR  DN  FGY RR+LSVEWA+   GERG+ RDG K+++
Sbjct: 5   LHIDAGYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAKDFQGERGKPRDG-KAVS 64

Query: 301 NQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECT 360
           NQRPTKTLFVINFDPIRTR RD+ERHFEPYGKVLNVR+RRNFAFVQF TQEDATKAL+ T
Sbjct: 65  NQRPTKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDST 124

Query: 361 HMSKILDRVVSVEYALRDDGERGDPFDESPRRAGYGRPGDSPYRRSPSPVFRRRPSPDYG 420
           H SK+LD+VVSVEYALR+ GER D +  S R            RRSPSPV+RRRPSPDY 
Sbjct: 125 HNSKLLDKVVSVEYALREAGEREDRYAGSRR------------RRSPSPVYRRRPSPDYT 184

Query: 421 RARSPAYDRYNG--PYERRRSPDYGRNRSPEYG 449
           R RSP YDRY G  PYERR+SPDYGR RS +YG
Sbjct: 185 RRRSPEYDRYKGPAPYERRKSPDYGR-RSSDYG 203

[Close]

BLAST of HG10013196 vs. TAIR 10
Match: AT5G52040.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 265.8 bits (678), Expect = 6.5e-71
Identity = 139/236 (58.90%), Postives = 169/236 (71.61%), Query Frame = 0


Query: 211 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 270
           M+P+F GNF YD R+S+LERLF KYG+VER+DMK+GFAFVY EDERDAEDAIR LD   +
Sbjct: 1   MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60

Query: 271 GYDRRRLSVEWARGER---GRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPY 330
           G   RRL VEW + +R   GR     +S +  RP+KTLFVINFD   TR RD+ERHFEPY
Sbjct: 61  GRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPY 120

Query: 331 GKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESP 390
           GK++NVRIRRNFAF+Q+E QEDAT+AL+ T+ SK++D+V+SVEYA++DD  RG+ +    
Sbjct: 121 GKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPER 180

Query: 391 RRAGYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNR 444
           RR    R  D   RRSPSP  R R SPDYGR  SP   +       R SPDYGR R
Sbjct: 181 RR---DRSPDR-RRRSPSPYRRERGSPDYGRGASPVAHK-----RERTSPDYGRGR 227

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BLAST of HG10013196 vs. TAIR 10
Match: AT5G52040.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 265.8 bits (678), Expect = 6.5e-71
Identity = 139/236 (58.90%), Postives = 169/236 (71.61%), Query Frame = 0


Query: 211 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 270
           M+P+F GNF YD R+S+LERLF KYG+VER+DMK+GFAFVY EDERDAEDAIR LD   +
Sbjct: 1   MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60

Query: 271 GYDRRRLSVEWARGER---GRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPY 330
           G   RRL VEW + +R   GR     +S +  RP+KTLFVINFD   TR RD+ERHFEPY
Sbjct: 61  GRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPY 120

Query: 331 GKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESP 390
           GK++NVRIRRNFAF+Q+E QEDAT+AL+ T+ SK++D+V+SVEYA++DD  RG+ +    
Sbjct: 121 GKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPER 180

Query: 391 RRAGYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNR 444
           RR    R  D   RRSPSP  R R SPDYGR  SP   +       R SPDYGR R
Sbjct: 181 RR---DRSPDR-RRRSPSPYRRERGSPDYGRGASPVAHK-----RERTSPDYGRGR 227

The following BLAST results are available for this feature:

BLAST of HG10013196 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597062.1	2.8e-201	72.78	Serine/arginine-rich splicing factor RS31, partial [Cucurbita argyrosperma subsp...	[more]
KAE8650222.1	1.2e-199	87.14	hypothetical protein Csa_011015 [Cucumis sativus]	[more]
XP_038893478.1	3.0e-134	99.59	serine/arginine-rich splicing factor RS31 isoform X1 [Benincasa hispida]	[more]
XP_004133800.1	2.5e-133	98.77	serine/arginine-rich splicing factor RS31 isoform X1 [Cucumis sativus] >XP_00843...	[more]
XP_022147391.1	2.2e-129	97.12	serine/arginine-rich splicing factor RS31-like isoform X1 [Momordica charantia]	[more]

BLAST of HG10013196 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92964	6.9e-94	74.59	Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana OX=3702 GN=RS3...	[more]
Q9ZPX8	1.6e-90	72.43	Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana OX=3702 GN=RS...	[more]
P92966	9.1e-70	58.90	Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana OX=3702 GN=RS4...	[more]
P92965	1.6e-69	58.63	Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana OX=3702 GN=RS4...	[more]
Q9NEW6	7.6e-16	31.40	Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans OX=62...	[more]

BLAST of HG10013196 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DBI0	1.2e-133	98.77	Serine/arginine-rich splicing factor RS31 isoform X2 OS=Cucumis melo var. makuwa...	[more]
A0A0A0L8H4	1.2e-133	98.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119350 PE=4 SV=1	[more]
A0A1S3AUZ7	1.2e-133	98.77	serine/arginine-rich splicing factor RS31-like isoform X1 OS=Cucumis melo OX=365...	[more]
A0A6J1D279	1.1e-129	97.12	serine/arginine-rich splicing factor RS31-like isoform X1 OS=Momordica charantia...	[more]
A0A6J1ECU9	1.6e-125	94.12	serine/arginine-rich splicing factor RS31-like isoform X1 OS=Cucurbita moschata ...	[more]

BLAST of HG10013196 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61860.1	4.9e-95	74.59	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G46610.1	1.1e-91	72.43	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G46610.2	2.5e-75	70.89	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G52040.1	6.5e-71	58.90	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G52040.2	6.5e-71	58.90	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 304..370 e-value: 3.3E-17 score: 73.2 coord: 213..280 e-value: 7.5E-16 score: 68.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 214..269 e-value: 4.5E-16 score: 58.4 coord: 305..367 e-value: 8.1E-12 score: 44.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 303..374 score: 15.220978
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 212..284 score: 17.438179
IPR026015	F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily	GENE3D	1.10.520.20		coord: 81..155 e-value: 4.2E-6 score: 29.3
IPR026015	F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily	SUPERFAMILY	47928	N-terminal domain of the delta subunit of the F1F0-ATP synthase	coord: 82..138
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 209..294 e-value: 2.2E-21 score: 77.9 coord: 295..382 e-value: 9.6E-19 score: 69.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 376..453
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 376..391
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 427..453
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 214..422
None	No IPR available	CDD	cd12234	RRM1_AtRSp31_like	coord: 212..283 e-value: 4.88312E-37 score: 128.4
None	No IPR available	CDD	cd12466	RRM2_AtRSp31_like	coord: 304..373 e-value: 1.00892E-40 score: 138.065
IPR029537	Arginine/serine-rich-splicing factor RSP31/31A	PANTHER	PTHR23147:SF146	SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED	coord: 214..422
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 212..377

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10013196.1	HG10013196.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016607	nuclear speck
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding