HG10013136 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10013136
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr01: 27189517 .. 27189864 (-)
RNA-Seq ExpressionHG10013136
SyntenyHG10013136
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGAAGCTACGAGAAATGAAAACGATTCTAAAGAAGAACGAGAGTTGAGAGAAGAAAATGAAGGAGAAGCCATAGAATCGAGTTCGAGTTCGTCATTTCTACAAGATTTGAACCTTATATTTGTGCTTCTTTCATTGATTTCTCCAAATTCAAATGAAGATTCAAATGGTGGCAATGGCGAATCAATGAGAATGAAAGAACTTGAAGCTAGTACAACTTACAATATTCCACGATCAAGTGTAAGAAAACAAGATGTTATTGAAGCCAAGCACGAAAGTCGCCGACGATTACCTCAAAAGTCTCATACAACAATAAAGGATCACAGGTTCTTCTCTATGTACTAA

mRNA sequence

ATGATGGAAGCTACGAGAAATGAAAACGATTCTAAAGAAGAACGAGAGTTGAGAGAAGAAAATGAAGGAGAAGCCATAGAATCGAGTTCGAGTTCGTCATTTCTACAAGATTTGAACCTTATATTTGTGCTTCTTTCATTGATTTCTCCAAATTCAAATGAAGATTCAAATGGTGGCAATGGCGAATCAATGAGAATGAAAGAACTTGAAGCTAGTACAACTTACAATATTCCACGATCAAGTGTAAGAAAACAAGATGTTATTGAAGCCAAGCACGAAAGTCGCCGACGATTACCTCAAAAGTCTCATACAACAATAAAGGATCACAGGTTCTTCTCTATGTACTAA

Coding sequence (CDS)

ATGATGGAAGCTACGAGAAATGAAAACGATTCTAAAGAAGAACGAGAGTTGAGAGAAGAAAATGAAGGAGAAGCCATAGAATCGAGTTCGAGTTCGTCATTTCTACAAGATTTGAACCTTATATTTGTGCTTCTTTCATTGATTTCTCCAAATTCAAATGAAGATTCAAATGGTGGCAATGGCGAATCAATGAGAATGAAAGAACTTGAAGCTAGTACAACTTACAATATTCCACGATCAAGTGTAAGAAAACAAGATGTTATTGAAGCCAAGCACGAAAGTCGCCGACGATTACCTCAAAAGTCTCATACAACAATAAAGGATCACAGGTTCTTCTCTATGTACTAA

Protein sequence

MMEATRNENDSKEERELREENEGEAIESSSSSSFLQDLNLIFVLLSLISPNSNEDSNGGNGESMRMKELEASTTYNIPRSSVRKQDVIEAKHESRRRLPQKSHTTIKDHRFFSMY
Homology
BLAST of HG10013136 vs. NCBI nr
Match: KGN56466.1 (hypothetical protein Csa_011060 [Cucumis sativus])

HSP 1 Score: 144.4 bits (363), Expect = 5.9e-31
Identity = 79/112 (70.54%), Postives = 97/112 (86.61%), Query Frame = 0

Query: 1   MMEATRNENDSKEERELREE-NEGE-AIESSSSSSFLQDLNLIFVLLSLISPNSNEDSNG 60
           M+E   NEND K+++E+RE+ N GE  +ESSSSSSFL DLNL+FV LSLISPN+NEDSN 
Sbjct: 1   MVEGMGNENDFKDKQEMREDHNNGEDIVESSSSSSFLPDLNLLFVFLSLISPNTNEDSND 60

Query: 61  GNGESMRMKELEASTTYNIPRSSVRKQDVIEAKHESRRRLPQKSHTTIKDHR 111
           GNG SM+MKE+E STTYNI +SS+RK+DVIEA+HESRR++PQ+ HTTIKDHR
Sbjct: 61  GNGVSMKMKEIEDSTTYNIAKSSIRKKDVIEAQHESRRKVPQRLHTTIKDHR 112

BLAST of HG10013136 vs. NCBI nr
Match: KAG6597110.1 (hypothetical protein SDJN03_10290, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.9 bits (276), Expect = 7.3e-21
Identity = 71/120 (59.17%), Postives = 91/120 (75.83%), Query Frame = 0

Query: 1   MMEATR-NENDSKEERELREENEGEAIES---------SSSSSFLQDLNLIFVLLSLISP 60
           MME TR NE+D KEE+E+R++++GEA ++          SSSSFL ++NL+FVLLSL+  
Sbjct: 1   MMEETRSNESDIKEEQEMRDDSKGEASQNMGSGSGSGLDSSSSFLPEMNLVFVLLSLL-- 60

Query: 61  NSNEDSNGGNGESMRMKELEASTTYNIPRSSVRKQDVIEAKHESRRRLPQKSHTTIKDHR 111
            S+EDSNG  GE  + KE+EA TTYNI RSSV+K+DVIEAK E RRR+ Q+ HTTIKDHR
Sbjct: 61  -SHEDSNGEEGELTKAKEVEAITTYNIARSSVKKKDVIEAKPE-RRRVAQRFHTTIKDHR 116

BLAST of HG10013136 vs. NCBI nr
Match: KAG7028573.1 (hypothetical protein SDJN02_09754, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104.0 bits (258), Expect = 8.9e-19
Identity = 68/119 (57.14%), Postives = 89/119 (74.79%), Query Frame = 0

Query: 2   MEATR-NENDSKEERELREENEGEAIES---------SSSSSFLQDLNLIFVLLSLISPN 61
           ME TR NE+D KEE+E+R++++GEA ++          SSSSFL ++NL+FVLLSL+   
Sbjct: 1   MEETRSNESDIKEEQEMRDDSKGEASQNMGSGSGSGLDSSSSFLPEMNLVFVLLSLL--- 60

Query: 62  SNEDSNGGNGESMRMKELEASTTYNIPRSSVRKQDVIEAKHESRRRLPQKSHTTIKDHR 111
           S+E+SNG  GE  + KE+EA TTYNI RSSV+K+DVIEAK E R R+ Q+ HTTIKDHR
Sbjct: 61  SHENSNGEEGELTKAKEVEAITTYNIARSSVKKKDVIEAKPE-RPRVAQRFHTTIKDHR 115

BLAST of HG10013136 vs. ExPASy TrEMBL
Match: A0A0A0L8Q3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G120450 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.9e-31
Identity = 79/112 (70.54%), Postives = 97/112 (86.61%), Query Frame = 0

Query: 1   MMEATRNENDSKEERELREE-NEGE-AIESSSSSSFLQDLNLIFVLLSLISPNSNEDSNG 60
           M+E   NEND K+++E+RE+ N GE  +ESSSSSSFL DLNL+FV LSLISPN+NEDSN 
Sbjct: 1   MVEGMGNENDFKDKQEMREDHNNGEDIVESSSSSSFLPDLNLLFVFLSLISPNTNEDSND 60

Query: 61  GNGESMRMKELEASTTYNIPRSSVRKQDVIEAKHESRRRLPQKSHTTIKDHR 111
           GNG SM+MKE+E STTYNI +SS+RK+DVIEA+HESRR++PQ+ HTTIKDHR
Sbjct: 61  GNGVSMKMKEIEDSTTYNIAKSSIRKKDVIEAQHESRRKVPQRLHTTIKDHR 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN56466.15.9e-3170.54hypothetical protein Csa_011060 [Cucumis sativus][more]
KAG6597110.17.3e-2159.17hypothetical protein SDJN03_10290, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7028573.18.9e-1957.14hypothetical protein SDJN02_09754, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L8Q32.9e-3170.54Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G120450 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 2..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10013136.1HG10013136.1mRNA