HG10013109 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10013109
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	E3 ubiquitin-protein ligase RHA1B-like
Location	Chr01: 26955886 .. 26956458 (-)
RNA-Seq Expression	HG10013109
Synteny	HG10013109

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCGTCGCATAATCCCCTTTCTCTTTGCTGTTCCACAAACAGAACCAGAACCAGAACCGGAATCGGAATCCTCTCTCTCTCCGACCGCCATGGGTTATCCCATAGGATACGCCGACGTATTTTTCCCCAATGCCTTTCTCCATCTCTTCTTCTTTTTCGGCTATATTCGCAGCCTCATTGTTTCGCTCTTCCAATTTCTAGGGCTTTCCGATTTTCTCGAATCCGGCGTCGTTTGGCCCGAAAATCCGATCTCGATCTTCGACAATCAATCCGTATCGCCCATCATCATCGAGGAATTCGTCCCCGTCGTGAAATTCTCTGACATCGTTGCCGCCGTCGGATTTCCGCCGGAATGTTGCGCTGTTTGTCTCTGTGAGTTTCAGAACGATGAGGAGGTTAGGTTTTTGAAGAATTGTAAACACATTTTTCATAAGGAATGTTTGGATCGATGGATGATTCGCGACCAGAGGAGCTGTCCTCTCTGTAGAACCCTAATCGTGCCGGAGGAGTCGATTCCGTCGCTTATGGATTTTTCCGGTTGTTCTGAGTTTTCCGGCGACTATAGCTAA

mRNA sequence

ATGAACCGTCGCATAATCCCCTTTCTCTTTGCTGTTCCACAAACAGAACCAGAACCAGAACCGGAATCGGAATCCTCTCTCTCTCCGACCGCCATGGGTTATCCCATAGGATACGCCGACGTATTTTTCCCCAATGCCTTTCTCCATCTCTTCTTCTTTTTCGGCTATATTCGCAGCCTCATTGTTTCGCTCTTCCAATTTCTAGGGCTTTCCGATTTTCTCGAATCCGGCGTCGTTTGGCCCGAAAATCCGATCTCGATCTTCGACAATCAATCCGTATCGCCCATCATCATCGAGGAATTCGTCCCCGTCGTGAAATTCTCTGACATCGTTGCCGCCGTCGGATTTCCGCCGGAATGTTGCGCTGTTTGTCTCTGTGAGTTTCAGAACGATGAGGAGGTTAGGTTTTTGAAGAATTGTAAACACATTTTTCATAAGGAATGTTTGGATCGATGGATGATTCGCGACCAGAGGAGCTGTCCTCTCTGTAGAACCCTAATCGTGCCGGAGGAGTCGATTCCGTCGCTTATGGATTTTTCCGGTTGTTCTGAGTTTTCCGGCGACTATAGCTAA

Coding sequence (CDS)

ATGAACCGTCGCATAATCCCCTTTCTCTTTGCTGTTCCACAAACAGAACCAGAACCAGAACCGGAATCGGAATCCTCTCTCTCTCCGACCGCCATGGGTTATCCCATAGGATACGCCGACGTATTTTTCCCCAATGCCTTTCTCCATCTCTTCTTCTTTTTCGGCTATATTCGCAGCCTCATTGTTTCGCTCTTCCAATTTCTAGGGCTTTCCGATTTTCTCGAATCCGGCGTCGTTTGGCCCGAAAATCCGATCTCGATCTTCGACAATCAATCCGTATCGCCCATCATCATCGAGGAATTCGTCCCCGTCGTGAAATTCTCTGACATCGTTGCCGCCGTCGGATTTCCGCCGGAATGTTGCGCTGTTTGTCTCTGTGAGTTTCAGAACGATGAGGAGGTTAGGTTTTTGAAGAATTGTAAACACATTTTTCATAAGGAATGTTTGGATCGATGGATGATTCGCGACCAGAGGAGCTGTCCTCTCTGTAGAACCCTAATCGTGCCGGAGGAGTCGATTCCGTCGCTTATGGATTTTTCCGGTTGTTCTGAGTTTTCCGGCGACTATAGCTAA

Protein sequence

MNRRIIPFLFAVPQTEPEPEPESESSLSPTAMGYPIGYADVFFPNAFLHLFFFFGYIRSLIVSLFQFLGLSDFLESGVVWPENPISIFDNQSVSPIIIEEFVPVVKFSDIVAAVGFPPECCAVCLCEFQNDEEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPSLMDFSGCSEFSGDYS

Homology

[Close]

BLAST of HG10013109 vs. NCBI nr
Match: KAA0048956.1 (Zinc finger protein [Cucumis melo var. makuwa])

HSP 1 Score: 349.0 bits (894), Expect = 2.6e-92
Identity = 169/190 (88.95%), Postives = 177/190 (93.16%), Query Frame = 0


Query: 1   MNRRIIPFLFAVPQTEPEPEPESESSLSPTAMGYPIGYADVFFPNAFLHLFFFFGYIRSL 60
           MNRRIIPFLFAVPQTEPEPEP    SLSPTAMGYP+GYADVFFPNAFLHL FF GYIRSL
Sbjct: 1   MNRRIIPFLFAVPQTEPEPEP----SLSPTAMGYPVGYADVFFPNAFLHLLFFLGYIRSL 60

Query: 61  IVSLFQFLGLSDFLESGVVWPENPISIFDNQSVSPIIIEEFVPVVKFSDIVAAVGFPPEC 120
           IVSLFQFLGLSDFLES VVWPENP SIF ++SVS I+IEEFVPVVKF+DI+AAV FPPEC
Sbjct: 61  IVSLFQFLGLSDFLESNVVWPENPTSIFHDRSVSTILIEEFVPVVKFTDIIAAVEFPPEC 120

Query: 121 CAVCLCEFQNDEEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPSLMDFS 180
           CAVCLCEF +DEEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIP LMDFS
Sbjct: 121 CAVCLCEFHDDEEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFS 180

Query: 181 GCSEFSGDYS 191
           GC+EFSGDYS
Sbjct: 181 GCTEFSGDYS 186

[Close]

BLAST of HG10013109 vs. NCBI nr
Match: TYK17611.1 (Zinc finger protein [Cucumis melo var. makuwa])

HSP 1 Score: 348.6 bits (893), Expect = 3.4e-92
Identity = 168/190 (88.42%), Postives = 177/190 (93.16%), Query Frame = 0


Query: 1   MNRRIIPFLFAVPQTEPEPEPESESSLSPTAMGYPIGYADVFFPNAFLHLFFFFGYIRSL 60
           MNRRIIPFLFAVPQTEPEPEP    SLSPTAMGYP+GYADVFFPNAFLHL FF GYIRSL
Sbjct: 1   MNRRIIPFLFAVPQTEPEPEP----SLSPTAMGYPVGYADVFFPNAFLHLLFFLGYIRSL 60

Query: 61  IVSLFQFLGLSDFLESGVVWPENPISIFDNQSVSPIIIEEFVPVVKFSDIVAAVGFPPEC 120
           IVSLFQFLGLSDFLES VVWPENP SIF ++SVS I+IEEFVPVVKF+DI+AAV FPPEC
Sbjct: 61  IVSLFQFLGLSDFLESNVVWPENPTSIFHDRSVSTILIEEFVPVVKFTDIIAAVEFPPEC 120

Query: 121 CAVCLCEFQNDEEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPSLMDFS 180
           CAVCLCEF +DEEVRFLKNCKH+FHKECLDRWMIRDQRSCPLCRTLIVPEESIP LMDFS
Sbjct: 121 CAVCLCEFHDDEEVRFLKNCKHVFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFS 180

Query: 181 GCSEFSGDYS 191
           GC+EFSGDYS
Sbjct: 181 GCTEFSGDYS 186

[Close]

BLAST of HG10013109 vs. NCBI nr
Match: KGN56500.1 (hypothetical protein Csa_010889 [Cucumis sativus])

HSP 1 Score: 335.9 bits (860), Expect = 2.3e-88
Identity = 165/190 (86.84%), Postives = 174/190 (91.58%), Query Frame = 0


Query: 1   MNRRIIPFLFAVPQTEPEPEPESESSLSPTAMGYPIGYADVFFPNAFLHLFFFFGYIRSL 60
           MNRRIIP LFAVPQTEPEP    ESSLSPTAMGYPIGYAD+FFPNAFLHL FF GYIRSL
Sbjct: 1   MNRRIIPLLFAVPQTEPEP----ESSLSPTAMGYPIGYADMFFPNAFLHLLFFLGYIRSL 60

Query: 61  IVSLFQFLGLSDFLESGVVWPENPISIFDNQSVSPIIIEEFVPVVKFSDIVAAVGFPPEC 120
           IVSLFQFLGLSDFLES VVWPENP SIF ++SV  I+IE+FVPVVKF+DIVAAV FPPEC
Sbjct: 61  IVSLFQFLGLSDFLESNVVWPENPTSIFYDRSVPTILIEKFVPVVKFTDIVAAVEFPPEC 120

Query: 121 CAVCLCEFQNDEEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPSLMDFS 180
           CAVCLCEFQ+D+EVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIP LMDFS
Sbjct: 121 CAVCLCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFS 180

Query: 181 GCSEFSGDYS 191
            C+EFSG YS
Sbjct: 181 DCTEFSGYYS 186

[Close]

BLAST of HG10013109 vs. NCBI nr
Match: KAG6582623.1 (Brassinosteroid-responsive RING protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 317.8 bits (813), Expect = 6.5e-83
Identity = 155/192 (80.73%), Postives = 166/192 (86.46%), Query Frame = 0


Query: 1   MNRRIIPFLFAVPQTEPEPEPESESSLSPTAMGYPIGYADVFFPNAFLHLFFFFGYIRSL 60
           MNRR+IPFLFAVPQT    +PESESSLSPTAMGYP+GYADVFF NAFLHL  F GYIRSL
Sbjct: 1   MNRRVIPFLFAVPQT----QPESESSLSPTAMGYPVGYADVFFSNAFLHLLVFLGYIRSL 60

Query: 61  IVSLFQFLGLSDFLESGVVWPENPISIFDNQSVSPIIIEEFVPVVKFSDI--VAAVGFPP 120
           I+SL++ LGL DFLES VVWP+NP  I D+ SV PI IEEF P+VKFSDI   A  GFPP
Sbjct: 61  IISLYRILGLPDFLESSVVWPQNPTPIIDDHSVLPIRIEEFFPMVKFSDIFDAAGAGFPP 120

Query: 121 ECCAVCLCEFQNDEEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPSLMD 180
           ECCAVCLCEFQ+DEEVRFLKNCKHIFHKECLD WMIRDQRSCPLCRTLIVPEESIP L+D
Sbjct: 121 ECCAVCLCEFQDDEEVRFLKNCKHIFHKECLDGWMIRDQRSCPLCRTLIVPEESIPPLVD 180

Query: 181 FSGCSEFSGDYS 191
           F GCSEFSGDYS
Sbjct: 181 FPGCSEFSGDYS 188

[Close]

BLAST of HG10013109 vs. NCBI nr
Match: XP_023526936.1 (E3 ubiquitin-protein ligase RHA1B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 315.8 bits (808), Expect = 2.5e-82
Identity = 155/192 (80.73%), Postives = 165/192 (85.94%), Query Frame = 0


Query: 1   MNRRIIPFLFAVPQTEPEPEPESESSLSPTAMGYPIGYADVFFPNAFLHLFFFFGYIRSL 60
           MNRR+IPFLFAVPQT    EPESESSLSPTAMGYP+GYADVFF NAFLHL    GYIRSL
Sbjct: 1   MNRRVIPFLFAVPQT----EPESESSLSPTAMGYPVGYADVFFSNAFLHLLVLLGYIRSL 60

Query: 61  IVSLFQFLGLSDFLESGVVWPENPISIFDNQSVSPIIIEEFVPVVKFSDI--VAAVGFPP 120
           I+SLF+ LGL DFLES VVWP+NP  I D+ SV PI IEEF PVVKFSDI   A  GFPP
Sbjct: 61  IISLFRILGLPDFLESNVVWPQNPTPIIDDHSVLPIRIEEFFPVVKFSDIFDAAGAGFPP 120

Query: 121 ECCAVCLCEFQNDEEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPSLMD 180
           ECCAVCLCEF++DEEVRFLKNCKHIFHKECLD WMIRDQRSCPLCRTLIVPE SIP L+D
Sbjct: 121 ECCAVCLCEFEDDEEVRFLKNCKHIFHKECLDGWMIRDQRSCPLCRTLIVPEGSIPPLVD 180

Query: 181 FSGCSEFSGDYS 191
           F+GCSEFSGDYS
Sbjct: 181 FAGCSEFSGDYS 188

[Close]

BLAST of HG10013109 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 6.2e-36
Identity = 70/144 (48.61%), Postives = 101/144 (70.14%), Query Frame = 0


Query: 32  MGYPIGYADVFFPNAFLHLFFFFGYIRSLIVSLFQFLGLSDFLESGVVWPE---NPISIF 91
           MG+P+GY +VF P  F+      G+IR+++ S+F+FLGLSDFLE    WP+    P  I 
Sbjct: 1   MGFPVGYTEVFLPKLFVQTLSILGFIRTIVFSIFRFLGLSDFLEMDQTWPDYTSYPTRIP 60

Query: 92  DNQS-VSPIIIEEFVPVVKFSDIVAAVGFPPECCAVCLCEFQNDEEVRFLKNCKHIFHKE 151
           + +S  S ++I E +PV+KF ++  +    PE CAVCL EF+ ++E+R+L+NC+HIFH+ 
Sbjct: 61  ETRSPFSALLIREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRS 120

Query: 152 CLDRWMIRDQRSCPLCRTLIVPEE 172
           CLDRWM  DQ++CPLCRT  VP+E
Sbjct: 121 CLDRWMDHDQKTCPLCRTPFVPDE 144

[Close]

BLAST of HG10013109 vs. ExPASy Swiss-Prot
Match: Q9SUS5 (E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-19
Identity = 48/141 (34.04%), Postives = 80/141 (56.74%), Query Frame = 0


Query: 32  MGYPIGYADVFFPNAFLHLFFFFGYIRSLIVSLFQFLGLSDFLESGVVWPENPISIFDNQ 91
           MG P  + ++  P   L   +  G+ R ++ +L  ++GL  FL+       +P  +    
Sbjct: 1   MGLPTDFKELQIPGYVLKTLYVIGFFRDMVDALCPYIGLPSFLDHNETSRSDPTRL--AL 60

Query: 92  SVSPIIIEEFVPVVKFSDIVAAVGFPPECCAVCLCEFQNDEEVRFLKNCKHIFHKECLDR 151
           S S  +  E +PVV+FSD++     P +CC VCL +F +D+++R L  C H+FH  CLDR
Sbjct: 61  STSATLANELIPVVRFSDLLTD---PEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDR 120

Query: 152 WMIR-DQRSCPLCRTLIVPEE 172
           W++  ++ +CP+CR   +PEE
Sbjct: 121 WIVDCNKITCPICRNRFLPEE 136

[Close]

BLAST of HG10013109 vs. ExPASy Swiss-Prot
Match: Q9SUS4 (Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana OX=3702 GN=RHA1A PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.9e-17
Identity = 52/159 (32.70%), Postives = 84/159 (52.83%), Query Frame = 0


Query: 32  MGYPIGY-ADVFFPNAFLHLFFFFGYIRSLIVSLFQFLGLSDFLESGVVWPENPISIFDN 91
           MG P  +  ++  P+  L + +  G+ R ++ +L  ++GL  FL+        P      
Sbjct: 1   MGLPEDFITELQIPSYILKILYVIGFFRDIVDALCPYIGLPRFLDHNET--SAPDLTRHA 60

Query: 92  QSVSPIIIEEFVPVVKFSDIVAAVGFPPECCAVCLCEFQNDEEVRFLKNCKHIFHKECLD 151
            S S  +  E +PVV+FSD+      P +CC VCL +F++D++VR L  C H+FH  CLD
Sbjct: 61  LSTSASLANELIPVVRFSDLPTD---PEDCCTVCLSDFESDDKVRQLPKCGHVFHHYCLD 120

Query: 152 RWMI-RDQRSCPLCRTLIVPEESIPSLMDFSGCSEFSGD 189
           RW++  ++  CP+CR   +P+E        SG   FS +
Sbjct: 121 RWIVDYNKMKCPVCRHRFLPKEKYTQSDWGSGSDWFSDE 154

[Close]

BLAST of HG10013109 vs. ExPASy Swiss-Prot
Match: Q9P7E1 (Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBP4H10.07 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.8e-12
Identity = 39/88 (44.32%), Postives = 49/88 (55.68%), Query Frame = 0


Query: 93  VSPIIIEEFVPVVKFSDIVAAVGFPP-----ECCAVCLCEFQNDEEVRFLKNCKHIFHKE 152
           ++ II  E  PV    D+  A G  P     E C VCL  F+ ++E R LK C H FH+E
Sbjct: 492 LNSIIGIEKPPVASQKDLEKAGGVFPFSGTDERCLVCLSNFELNDECRRLKQCNHFFHRE 551

Query: 153 CLDRWMIRDQRSCPLCRTLIVPEESIPS 176
           C+D+W+   Q SCPLCRT  V   S PS
Sbjct: 552 CIDQWLTSSQNSCPLCRTKGVASASTPS 579

[Close]

BLAST of HG10013109 vs. ExPASy Swiss-Prot
Match: Q940Q4 (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 9.9e-10
Identity = 52/185 (28.11%), Postives = 84/185 (45.41%), Query Frame = 0


Query: 10  FAVPQTEPEPEPES---------ESSLSPTAMGYPIGYADVFFPNAFLHLFF-------- 69
           F  P + P+  P S          S +SP+ +   I  + +FF +  LHL          
Sbjct: 21  FLSPSSLPQEPPLSLRSSANFDLNSKISPSILLIIIILSIIFFISGLLHLLVRFLLTPSS 80

Query: 70  -----FFGYIRSLIVSLFQFLGLSDFLESGVVWPENPISIFDNQSVSPIIIEEFVPVVKF 129
                +F  + +L   L Q   L D   SGV           +QS       + +PV  +
Sbjct: 81  RDREDYFDNVTALQGQLQQLFHLHD---SGV-----------DQS-----FIDTLPVFHY 140

Query: 130 SDIVAAVGFPPECCAVCLCEFQNDEEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLI 173
             I+    +P + CAVCLCEF+ ++++R L  C H FH +C+D W++    +CPLCR+ +
Sbjct: 141 KSIIGLKNYPFD-CAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWLL-SHSTCPLCRSSL 184

[Close]

BLAST of HG10013109 vs. ExPASy TrEMBL
Match: A0A5A7U3X1 (Zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001770 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.3e-92
Identity = 169/190 (88.95%), Postives = 177/190 (93.16%), Query Frame = 0


Query: 1   MNRRIIPFLFAVPQTEPEPEPESESSLSPTAMGYPIGYADVFFPNAFLHLFFFFGYIRSL 60
           MNRRIIPFLFAVPQTEPEPEP    SLSPTAMGYP+GYADVFFPNAFLHL FF GYIRSL
Sbjct: 1   MNRRIIPFLFAVPQTEPEPEP----SLSPTAMGYPVGYADVFFPNAFLHLLFFLGYIRSL 60

Query: 61  IVSLFQFLGLSDFLESGVVWPENPISIFDNQSVSPIIIEEFVPVVKFSDIVAAVGFPPEC 120
           IVSLFQFLGLSDFLES VVWPENP SIF ++SVS I+IEEFVPVVKF+DI+AAV FPPEC
Sbjct: 61  IVSLFQFLGLSDFLESNVVWPENPTSIFHDRSVSTILIEEFVPVVKFTDIIAAVEFPPEC 120

Query: 121 CAVCLCEFQNDEEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPSLMDFS 180
           CAVCLCEF +DEEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIP LMDFS
Sbjct: 121 CAVCLCEFHDDEEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFS 180

Query: 181 GCSEFSGDYS 191
           GC+EFSGDYS
Sbjct: 181 GCTEFSGDYS 186

[Close]

BLAST of HG10013109 vs. ExPASy TrEMBL
Match: A0A5D3D061 (Zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G004810 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.7e-92
Identity = 168/190 (88.42%), Postives = 177/190 (93.16%), Query Frame = 0


Query: 1   MNRRIIPFLFAVPQTEPEPEPESESSLSPTAMGYPIGYADVFFPNAFLHLFFFFGYIRSL 60
           MNRRIIPFLFAVPQTEPEPEP    SLSPTAMGYP+GYADVFFPNAFLHL FF GYIRSL
Sbjct: 1   MNRRIIPFLFAVPQTEPEPEP----SLSPTAMGYPVGYADVFFPNAFLHLLFFLGYIRSL 60

Query: 61  IVSLFQFLGLSDFLESGVVWPENPISIFDNQSVSPIIIEEFVPVVKFSDIVAAVGFPPEC 120
           IVSLFQFLGLSDFLES VVWPENP SIF ++SVS I+IEEFVPVVKF+DI+AAV FPPEC
Sbjct: 61  IVSLFQFLGLSDFLESNVVWPENPTSIFHDRSVSTILIEEFVPVVKFTDIIAAVEFPPEC 120

Query: 121 CAVCLCEFQNDEEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPSLMDFS 180
           CAVCLCEF +DEEVRFLKNCKH+FHKECLDRWMIRDQRSCPLCRTLIVPEESIP LMDFS
Sbjct: 121 CAVCLCEFHDDEEVRFLKNCKHVFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFS 180

Query: 181 GCSEFSGDYS 191
           GC+EFSGDYS
Sbjct: 181 GCTEFSGDYS 186

[Close]

BLAST of HG10013109 vs. ExPASy TrEMBL
Match: A0A0A0L3J4 (Zinc finger protein OS=Cucumis sativus OX=3659 GN=Csa_3G121750 PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.1e-88
Identity = 165/190 (86.84%), Postives = 174/190 (91.58%), Query Frame = 0


Query: 1   MNRRIIPFLFAVPQTEPEPEPESESSLSPTAMGYPIGYADVFFPNAFLHLFFFFGYIRSL 60
           MNRRIIP LFAVPQTEPEP    ESSLSPTAMGYPIGYAD+FFPNAFLHL FF GYIRSL
Sbjct: 1   MNRRIIPLLFAVPQTEPEP----ESSLSPTAMGYPIGYADMFFPNAFLHLLFFLGYIRSL 60

Query: 61  IVSLFQFLGLSDFLESGVVWPENPISIFDNQSVSPIIIEEFVPVVKFSDIVAAVGFPPEC 120
           IVSLFQFLGLSDFLES VVWPENP SIF ++SV  I+IE+FVPVVKF+DIVAAV FPPEC
Sbjct: 61  IVSLFQFLGLSDFLESNVVWPENPTSIFYDRSVPTILIEKFVPVVKFTDIVAAVEFPPEC 120

Query: 121 CAVCLCEFQNDEEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPSLMDFS 180
           CAVCLCEFQ+D+EVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIP LMDFS
Sbjct: 121 CAVCLCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFS 180

Query: 181 GCSEFSGDYS 191
            C+EFSG YS
Sbjct: 181 DCTEFSGYYS 186

[Close]

BLAST of HG10013109 vs. ExPASy TrEMBL
Match: A0A6J1E8G9 (E3 ubiquitin-protein ligase RHA1B-like OS=Cucurbita moschata OX=3662 GN=LOC111431816 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 1.2e-69
Identity = 129/161 (80.12%), Postives = 141/161 (87.58%), Query Frame = 0


Query: 32  MGYPIGYADVFFPNAFLHLFFFFGYIRSLIVSLFQFLGLSDFLESGVVWPENPISIFDNQ 91
           MGYP+GYADVFF NAFLHL  F GYIRSLI+SL++ LGL DFLES VVWP+NP  I D+ 
Sbjct: 1   MGYPVGYADVFFSNAFLHLLVFLGYIRSLIISLYRILGLPDFLESSVVWPQNPTPIIDDH 60

Query: 92  SVSPIIIEEFVPVVKFSDI--VAAVGFPPECCAVCLCEFQNDEEVRFLKNCKHIFHKECL 151
           SV PI IEEF P+VKFSDI   A  GFPPECCAVCLCEFQ+DEEVRFLKNCKHIFHKECL
Sbjct: 61  SVLPIRIEEFFPMVKFSDIFDAAGAGFPPECCAVCLCEFQDDEEVRFLKNCKHIFHKECL 120

Query: 152 DRWMIRDQRSCPLCRTLIVPEESIPSLMDFSGCSEFSGDYS 191
           D WMIRDQRSCPLCRTLIVPEES+P+L+DF+GCSEFSGDYS
Sbjct: 121 DGWMIRDQRSCPLCRTLIVPEESMPALVDFAGCSEFSGDYS 161

[Close]

BLAST of HG10013109 vs. ExPASy TrEMBL
Match: A0A6J1IWS3 (E3 ubiquitin-protein ligase RHA1B-like OS=Cucurbita maxima OX=3661 GN=LOC111479288 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 3.4e-69
Identity = 130/161 (80.75%), Postives = 138/161 (85.71%), Query Frame = 0


Query: 32  MGYPIGYADVFFPNAFLHLFFFFGYIRSLIVSLFQFLGLSDFLESGVVWPENPISIFDNQ 91
           MGYP+GYADVFF NAFLHL  F GYIRSLI+SLF+ LGL DFLES VVWP+NP    D+ 
Sbjct: 1   MGYPVGYADVFFSNAFLHLLIFLGYIRSLIISLFRILGLPDFLESSVVWPQNPTPTIDDH 60

Query: 92  SVSPIIIEEFVPVVKFSDIVAA--VGFPPECCAVCLCEFQNDEEVRFLKNCKHIFHKECL 151
           SV PI IEEF PVVKFSDI  A   GFPPECCAVCLCEFQ DEEVRFLKNCKHIFHKECL
Sbjct: 61  SVLPIPIEEFFPVVKFSDIFDATGAGFPPECCAVCLCEFQGDEEVRFLKNCKHIFHKECL 120

Query: 152 DRWMIRDQRSCPLCRTLIVPEESIPSLMDFSGCSEFSGDYS 191
           D WMIRDQ+SCPLCRTLIVPEESIP L+DF+GCSEFSGDYS
Sbjct: 121 DGWMIRDQKSCPLCRTLIVPEESIPPLVDFAGCSEFSGDYS 161

[Close]

BLAST of HG10013109 vs. TAIR 10
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2 )

HSP 1 Score: 152.1 bits (383), Expect = 4.4e-37
Identity = 70/144 (48.61%), Postives = 101/144 (70.14%), Query Frame = 0


Query: 32  MGYPIGYADVFFPNAFLHLFFFFGYIRSLIVSLFQFLGLSDFLESGVVWPE---NPISIF 91
           MG+P+GY +VF P  F+      G+IR+++ S+F+FLGLSDFLE    WP+    P  I 
Sbjct: 1   MGFPVGYTEVFLPKLFVQTLSILGFIRTIVFSIFRFLGLSDFLEMDQTWPDYTSYPTRIP 60

Query: 92  DNQS-VSPIIIEEFVPVVKFSDIVAAVGFPPECCAVCLCEFQNDEEVRFLKNCKHIFHKE 151
           + +S  S ++I E +PV+KF ++  +    PE CAVCL EF+ ++E+R+L+NC+HIFH+ 
Sbjct: 61  ETRSPFSALLIREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRS 120

Query: 152 CLDRWMIRDQRSCPLCRTLIVPEE 172
           CLDRWM  DQ++CPLCRT  VP+E
Sbjct: 121 CLDRWMDHDQKTCPLCRTPFVPDE 144

[Close]

BLAST of HG10013109 vs. TAIR 10
Match: AT1G63840.1 (RING/U-box superfamily protein )

HSP 1 Score: 134.8 bits (338), Expect = 7.2e-32
Identity = 68/143 (47.55%), Postives = 96/143 (67.13%), Query Frame = 0


Query: 32  MGYPIGYADVFFPNAFLHLFFFFGYIRSLIVSLFQFLGLSDFLESGVV---WPENPISIF 91
           MG+P+GY+++  P  F +L  F G IR LI ++F+ +GL DFLE   V   WP+ P ++ 
Sbjct: 1   MGFPVGYSELLLPKIFFYLLSFLGLIRKLISTMFKIIGLPDFLEPEPVSTSWPDPPPTLT 60

Query: 92  DNQSVSPIIIEEFVPVVKFSDIVAAVGFPPECCAVCLCEFQNDEEVRFLKNCKHIFHKEC 151
              S + I+  E +PVV+FSDI        ECCAVCL +F+ND+E+R L NC+HIFH+ C
Sbjct: 61  KPDSAA-ILAGEMLPVVRFSDINRP---ESECCAVCLYDFENDDEIRRLTNCRHIFHRGC 120

Query: 152 LDRWMI-RDQRSCPLCRTLIVPE 171
           LDRWM+  +Q +CPLCRT  +P+
Sbjct: 121 LDRWMMGYNQMTCPLCRTQFIPD 139

[Close]

BLAST of HG10013109 vs. TAIR 10
Match: AT5G41400.1 (RING/U-box superfamily protein )

HSP 1 Score: 126.3 bits (316), Expect = 2.6e-29
Identity = 70/156 (44.87%), Postives = 96/156 (61.54%), Query Frame = 0


Query: 32  MGYPIGYADVFFPNAFLHLFFFFGYIRSLIVSLFQFLGLSDFLESGVV-----WPENP-- 91
           MGYP+GY ++  P  FLHL    G IR+LI + F+ LGL DFLES  V     W E P  
Sbjct: 1   MGYPVGYTELLLPRIFLHLLSLLGLIRTLIDTGFRILGLPDFLESDPVSSSSSWLEPPYM 60

Query: 92  -ISIFDNQS------VSPIIIEEFVPVVKFSDIV-AAVGFPPECCAVCLCEFQNDEEVRF 151
             +   +Q       V+  +  E +PV++FS++     G   +CCAVCL EF+ND+E+R 
Sbjct: 61  STAAHHHQESSFFFPVAARLAGEILPVIRFSELTRPGFGSGSDCCAVCLHEFENDDEIRR 120

Query: 152 LKNCKHIFHKECLDRWMI-RDQRSCPLCRTLIVPEE 172
           L NC+HIFH+ CLDRWM+  +Q +CPLCRT  + +E
Sbjct: 121 LTNCQHIFHRSCLDRWMMGYNQMTCPLCRTPFISDE 156

[Close]

BLAST of HG10013109 vs. TAIR 10
Match: AT4G11360.1 (RING-H2 finger A1B )

HSP 1 Score: 98.2 bits (243), Expect = 7.5e-21
Identity = 48/141 (34.04%), Postives = 80/141 (56.74%), Query Frame = 0


Query: 32  MGYPIGYADVFFPNAFLHLFFFFGYIRSLIVSLFQFLGLSDFLESGVVWPENPISIFDNQ 91
           MG P  + ++  P   L   +  G+ R ++ +L  ++GL  FL+       +P  +    
Sbjct: 1   MGLPTDFKELQIPGYVLKTLYVIGFFRDMVDALCPYIGLPSFLDHNETSRSDPTRL--AL 60

Query: 92  SVSPIIIEEFVPVVKFSDIVAAVGFPPECCAVCLCEFQNDEEVRFLKNCKHIFHKECLDR 151
           S S  +  E +PVV+FSD++     P +CC VCL +F +D+++R L  C H+FH  CLDR
Sbjct: 61  STSATLANELIPVVRFSDLLTD---PEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDR 120

Query: 152 WMIR-DQRSCPLCRTLIVPEE 172
           W++  ++ +CP+CR   +PEE
Sbjct: 121 WIVDCNKITCPICRNRFLPEE 136

[Close]

BLAST of HG10013109 vs. TAIR 10
Match: AT4G11370.1 (RING-H2 finger A1A )

HSP 1 Score: 89.4 bits (220), Expect = 3.5e-18
Identity = 52/159 (32.70%), Postives = 84/159 (52.83%), Query Frame = 0


Query: 32  MGYPIGY-ADVFFPNAFLHLFFFFGYIRSLIVSLFQFLGLSDFLESGVVWPENPISIFDN 91
           MG P  +  ++  P+  L + +  G+ R ++ +L  ++GL  FL+        P      
Sbjct: 1   MGLPEDFITELQIPSYILKILYVIGFFRDIVDALCPYIGLPRFLDHNET--SAPDLTRHA 60

Query: 92  QSVSPIIIEEFVPVVKFSDIVAAVGFPPECCAVCLCEFQNDEEVRFLKNCKHIFHKECLD 151
            S S  +  E +PVV+FSD+      P +CC VCL +F++D++VR L  C H+FH  CLD
Sbjct: 61  LSTSASLANELIPVVRFSDLPTD---PEDCCTVCLSDFESDDKVRQLPKCGHVFHHYCLD 120

Query: 152 RWMI-RDQRSCPLCRTLIVPEESIPSLMDFSGCSEFSGD 189
           RW++  ++  CP+CR   +P+E        SG   FS +
Sbjct: 121 RWIVDYNKMKCPVCRHRFLPKEKYTQSDWGSGSDWFSDE 154

The following BLAST results are available for this feature:

BLAST of HG10013109 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048956.1	2.6e-92	88.95	Zinc finger protein [Cucumis melo var. makuwa]	[more]
TYK17611.1	3.4e-92	88.42	Zinc finger protein [Cucumis melo var. makuwa]	[more]
KGN56500.1	2.3e-88	86.84	hypothetical protein Csa_010889 [Cucumis sativus]	[more]
KAG6582623.1	6.5e-83	80.73	Brassinosteroid-responsive RING protein 1, partial [Cucurbita argyrosperma subsp...	[more]
XP_023526936.1	2.5e-82	80.73	E3 ubiquitin-protein ligase RHA1B-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10013109 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XF92	6.2e-36	48.61	Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH...	[more]
Q9SUS5	1.1e-19	34.04	E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 ...	[more]
Q9SUS4	4.9e-17	32.70	Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
Q9P7E1	2.8e-12	44.32	Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces pombe (strai...	[more]
Q940Q4	9.9e-10	28.11	RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2	[more]

BLAST of HG10013109 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U3X1	1.3e-92	88.95	Zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G...	[more]
A0A5D3D061	1.7e-92	88.42	Zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G...	[more]
A0A0A0L3J4	1.1e-88	86.84	Zinc finger protein OS=Cucumis sativus OX=3659 GN=Csa_3G121750 PE=4 SV=1	[more]
A0A6J1E8G9	1.2e-69	80.12	E3 ubiquitin-protein ligase RHA1B-like OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A6J1IWS3	3.4e-69	80.75	E3 ubiquitin-protein ligase RHA1B-like OS=Cucurbita maxima OX=3661 GN=LOC1114792...	[more]

BLAST of HG10013109 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61460.1	4.4e-37	48.61	brassinosteroid-responsive RING-H2	[more]
AT1G63840.1	7.2e-32	47.55	RING/U-box superfamily protein	[more]
AT5G41400.1	2.6e-29	44.87	RING/U-box superfamily protein	[more]
AT4G11360.1	7.5e-21	34.04	RING-H2 finger A1B	[more]
AT4G11370.1	3.5e-18	32.70	RING-H2 finger A1A	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 121..163 e-value: 3.6E-6 score: 36.5
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 121..164 e-value: 2.5E-11 score: 43.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 121..164 score: 12.636808
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 102..171 e-value: 2.5E-16 score: 60.7
None	No IPR available	PANTHER	PTHR45969:SF10	BRH1 RING FINGER PROTEIN	coord: 32..172
None	No IPR available	PANTHER	PTHR45969	RING ZINC FINGER PROTEIN-RELATED	coord: 32..172
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 120..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10013109.1	HG10013109.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0061630	ubiquitin protein ligase activity