HG10013055 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10013055
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	histone deacetylase complex subunit SAP18-like
Location	Chr01: 26494518 .. 26497322 (-)
RNA-Seq Expression	HG10013055
Synteny	HG10013055

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGAGAAGCCGAAGCACCAAGGAGGGCTTATGGCGCTCTTCCAAGAGCCCCTCATGCTCCTCCTCGTCCTCGTTTGGAGCCCGTTGATCGCGAAAAGGTTTCTCTCTTTCTCTCCTCTCTTTTTAGGGTTTCTGTCCCTTCCGGCGTTGTCTCTGATTTTCAATTTTGGTGTTCATTACCTTGTTATTGAATCCATCTTCATCTTAAATCGTTTTCTTCTGTCTTTGCTCTGGAATGCCATAAGAATCTCTTTATTTTCATTCTTATTATTTGAAACTCCAATTATTCCCTTTCCGTTACCTCTTAGTGTTCAAAGCTGGCTGTGTAAACATAGATAGCAGCTTTCATTTTCTATGCTGAGTCATTTCGTTTCTCTTCCTGCAGACTTGTCCTTTGCTGCTTCGTGTTTTTACGAAGGTATGTTGTATTTTGATGCTGGCTTTTGTTTTTATGAATTTTGTTTCGTATCTATGCAAAGTACGCAAAGAACAAGTGTGTTTCATCGCTTGAGGAACTGTAGTTTAATCCAGCCGATGTATCAATAGGGATGAAATGAAGTGCGTTGGGTTTCGAATTTGTGTGAAATGTTCTTTTGTTAATGTGATTGCGGAAACAGATAGGACTTAGGAACCGGATTAGAGGATCATTGAAGCAAATTTCCTTGGTTTTGCGCTGCTACATTTAGGTTATGAGGCTATATTGCTTATTGATGATCTAGGCTACCTTTTGCAAATCCTTGGCAGATTGGGAGTCACCATTTCAACGAAGATTTTGCTGTGAGAGGCAAGGAGCCGAGGGACGAGGTTCAAATTTATACCTGGAAAGATGCTACTCTTCGCGAGCTAACTGATCTGGTTGTATTTCTCATTCCTTTTCAACCTCTTCTCCCTCCACGGTTTGCATGACATAAATACCAATGATCTGTATCTTTTTGATTTATATCCATGATGCGTTCATAGACACTATTTCCCTTCCATTGCCCCTTGAACTTATGTGTCTGTACTTTTTTCTTCCCCTTTGGGTGGGGGAGCTTACAGGTCAAAGAGGTAGCTCCGGAAGCCAGGAGGAGAAATGCTAAACTTTCCTTCGCTTTGGTTTATCCTGATAGACATGGCCGGTTTGTATTGAGAGAGGTATTTATTTTCTCTCCTTTCCCATGTACCGTCATGCACACACACCTATATTTAGGTTTTCAGGATGATATACTAGAAAAACATCCATGACTCTTTGCACTTTTTACATTAAGTGTATCAAATTGAACACCCAAGTTAAATAAATGGTAAAATTATTATTTGTTATCACTTATCAAAACTAGGCTAGCCAAAGTGAGCGTAGCTCAATTAGCACAAAGTATCTGTTAATGACCGACAAGTACGTAGTTTGAAACTTATTTGAACTAGGCTAGATATTGCCCAAAAATTACTTGGATTCGACCAGAAAAACATTAACACTTTACAAGTTCAAGCAACAAAAACCTAACTACAAAGCGCACAAACCTTGCCAAACAAATGCTTAAATACAGAAATCAGCACTCGTGATTATTGTGCATCCAACTACGAGAATGGCATAAATGTCAAAGAGAAAAATTAACACCTGAACTAAGGAAAGTATTGAAGTAATCATTTATTTTAGTTTTGGTATCAATTCAATGAAATTAAGATTGTAGGGTTGAATTTTTACTCACTCGACCAAGTGCTGAAATAAAAAATGTTCCCCAATGTCAATCCTATACGTATATGACTTGTTCGATTGGGACAATACTTTCAGACTGGACTCTTTCATAGTCTTAAGAAAGTTTGAAGCGCACCATTTTGTTAAAAGATGGGTCGTTCTGCTTCTTGGACGTAGGTAGACATTAAACATGCTGAACTTGTGCTTAAGTTGCATACTCTTGCATGACTGTGATGGAGAAGTTGCCCAATTAAATTCATTTAGTGCTGAAAGGAGACAACTTATTAGGCTGAACTGAAATCTTTTATACTGAACTAGTGTCTTCGTGCCCTGCTGTAGCTTGCAGTTTCCTTAGCAGCAAAGAGTTTTCTTTATAAGGGCTTAGTTTGTGATATAAATGAATTCGTGATAAATTGCCCTCACTTAATTGACCTTTTGTAATTTACGTTTACAAATGTATGAAGAAAGCGAATTTCGAGTCCTAGCTTTAGTAGATATGACTAGTTATCATTTTGAAAGTTGATGCTTTGATCTCCATCTCTCCCATTGTTGTGCGAGGATCCCACGTTGAAAAGATAAAGTTACCTCACAATCTTTAAAAGATATATGAGTTATTCTTCTCATCGTCAATTAATTTTTAGATAGAACTCATGTTTATCTAATATGGTACTATAGCTCACAAAGTCTAAATGGATATTTGGTCCAAAAAATTGAGAGGCATGTGAGGATCTCATCCACATTGAACCGATGAAGAAACCATGAGTTATTCTTCAGAAATTTATATTTAACTAATGTATTGAACTAAAAGAAAATAGCTTGAGTCAGAGATTCTTTTCTTTATGTGAAGGTGGGGAAGACATTCTCGTTTGGAAATGGACGATTAGACGATAGCTTGGCTTTGGCAGAACTCGGTTTTCAGGTAAAACAAACATGGCTTTCGTTTTCGCCATATCAATCCTGTATTCCTTCTCATTCTTGCTGCAATTTTTTCCACGCAGATCGGAGATTACTTGGATGTGGCAATTATATAGGGTCTGTGGTGCCTTTATATCCTAAATTCCTAATAATACCTATATCAACCGGAAAAGGTATCGGGATTTCTTTCTCCAGTGAAGAACCAAACAAATGA

mRNA sequence

ATGGCGGGAGAAGCCGAAGCACCAAGGAGGGCTTATGGCGCTCTTCCAAGAGCCCCTCATGCTCCTCCTCGTCCTCGTTTGGAGCCCGTTGATCGCGAAAAGACTTGTCCTTTGCTGCTTCGTGTTTTTACGAAGATTGGGAGTCACCATTTCAACGAAGATTTTGCTGTGAGAGGCAAGGAGCCGAGGGACGAGGTCAAAGAGGTAGCTCCGGAAGCCAGGAGGAGAAATGCTAAACTTTCCTTCGCTTTGGTTTATCCTGATAGACATGGCCGGTTTGTATTGAGAGAGGTGGGGAAGACATTCTCGTTTGGAAATGGACGATTAGACGATAGCTTGGCTTTGGCAGAACTCGGTTTTCAGGTAAAACAAACATGGCTTTCGTTTTCGCCATATCAATCCTGTATTCCTTCTCATTCTTGCTGCAATTTTTTCCACGCAGATCGGAGATTACTTGGATGTGGCAATTATATAGGGTCTGTGGTGCCTTTATATCCTAAATTCCTAATAATACCTATATCAACCGGAAAAGGTATCGGGATTTCTTTCTCCAGTGAAGAACCAAACAAATGA

Coding sequence (CDS)

ATGGCGGGAGAAGCCGAAGCACCAAGGAGGGCTTATGGCGCTCTTCCAAGAGCCCCTCATGCTCCTCCTCGTCCTCGTTTGGAGCCCGTTGATCGCGAAAAGACTTGTCCTTTGCTGCTTCGTGTTTTTACGAAGATTGGGAGTCACCATTTCAACGAAGATTTTGCTGTGAGAGGCAAGGAGCCGAGGGACGAGGTCAAAGAGGTAGCTCCGGAAGCCAGGAGGAGAAATGCTAAACTTTCCTTCGCTTTGGTTTATCCTGATAGACATGGCCGGTTTGTATTGAGAGAGGTGGGGAAGACATTCTCGTTTGGAAATGGACGATTAGACGATAGCTTGGCTTTGGCAGAACTCGGTTTTCAGGTAAAACAAACATGGCTTTCGTTTTCGCCATATCAATCCTGTATTCCTTCTCATTCTTGCTGCAATTTTTTCCACGCAGATCGGAGATTACTTGGATGTGGCAATTATATAGGGTCTGTGGTGCCTTTATATCCTAAATTCCTAATAATACCTATATCAACCGGAAAAGGTATCGGGATTTCTTTCTCCAGTGAAGAACCAAACAAATGA

Protein sequence

MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKTFSFGNGRLDDSLALAELGFQVKQTWLSFSPYQSCIPSHSCCNFFHADRRLLGCGNYIGSVVPLYPKFLIIPISTGKGIGISFSSEEPNK

Homology

[Close]

BLAST of HG10013055 vs. NCBI nr
Match: XP_038879427.1 (histone deacetylase complex subunit SAP18 [Benincasa hispida])

HSP 1 Score: 233.0 bits (593), Expect = 2.1e-57
Identity = 119/139 (85.61%), Postives = 120/139 (86.33%), Query Frame = 0


Query: 1   MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
           MAGEAEAPRRAYGA PRA HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGAFPRASHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60

Query: 61  EPRDE-----------------VKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKTFS 120
           EPRDE                 VKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKTFS
Sbjct: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKTFS 120

Query: 121 FGNGRLDDSLALAELGFQV 123
           FGNGRLDDSLALAELGFQ+
Sbjct: 121 FGNGRLDDSLALAELGFQI 139

[Close]

BLAST of HG10013055 vs. NCBI nr
Match: XP_022943948.1 (histone deacetylase complex subunit SAP18-like [Cucurbita moschata] >KAG6597180.1 Histone deacetylase complex subunit SAP18, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028645.1 Histone deacetylase complex subunit SAP18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 230.3 bits (586), Expect = 1.4e-56
Identity = 117/139 (84.17%), Postives = 120/139 (86.33%), Query Frame = 0


Query: 1   MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
           MAGEAEAPRRAYGA PRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK
Sbjct: 24  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83

Query: 61  EPRDE-----------------VKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKTFS 120
           EPRDE                 VKEVAPEARRRNAKLSFALVYPDRHGRFV+REVGKTFS
Sbjct: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143

Query: 121 FGNGRLDDSLALAELGFQV 123
           FGNGR DD+LALAELGFQ+
Sbjct: 144 FGNGRSDDNLALAELGFQI 162

[Close]

BLAST of HG10013055 vs. NCBI nr
Match: XP_023538738.1 (histone deacetylase complex subunit SAP18 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 230.3 bits (586), Expect = 1.4e-56
Identity = 117/139 (84.17%), Postives = 120/139 (86.33%), Query Frame = 0


Query: 1   MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
           MAGEAEAPRRAYGA PRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60

Query: 61  EPRDE-----------------VKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKTFS 120
           EPRDE                 VKEVAPEARRRNAKLSFALVYPDRHGRFV+REVGKTFS
Sbjct: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 120

Query: 121 FGNGRLDDSLALAELGFQV 123
           FGNGR DD+LALAELGFQ+
Sbjct: 121 FGNGRSDDNLALAELGFQI 139

[Close]

BLAST of HG10013055 vs. NCBI nr
Match: XP_022974173.1 (histone deacetylase complex subunit SAP18-like [Cucurbita maxima])

HSP 1 Score: 230.3 bits (586), Expect = 1.4e-56
Identity = 117/139 (84.17%), Postives = 120/139 (86.33%), Query Frame = 0


Query: 1   MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
           MAGEAEAPRRAYGA PRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK
Sbjct: 24  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83

Query: 61  EPRDE-----------------VKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKTFS 120
           EPRDE                 VKEVAPEARRRNAKLSFALVYPDRHGRFV+REVGKTFS
Sbjct: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143

Query: 121 FGNGRLDDSLALAELGFQV 123
           FGNGR DD+LALAELGFQ+
Sbjct: 144 FGNGRSDDNLALAELGFQI 162

[Close]

BLAST of HG10013055 vs. NCBI nr
Match: XP_022147400.1 (histone deacetylase complex subunit SAP18 [Momordica charantia])

HSP 1 Score: 228.8 bits (582), Expect = 3.9e-56
Identity = 115/139 (82.73%), Postives = 118/139 (84.89%), Query Frame = 0


Query: 1   MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
           MAGEAEAPRRAYGA PR PH PPRPRLEPVDREKTCPLLLRVFTK+G HHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGAPPRGPHVPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGK 60

Query: 61  EPRDE-----------------VKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKTFS 120
           EPRDE                 VKEVAPEARRRNAKLSFALVYPDRHGRFV+REVGKTFS
Sbjct: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 120

Query: 121 FGNGRLDDSLALAELGFQV 123
           FGNGRLDDSLALAELGFQ+
Sbjct: 121 FGNGRLDDSLALAELGFQI 139

[Close]

BLAST of HG10013055 vs. ExPASy Swiss-Prot
Match: O64644 (Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana OX=3702 GN=At2g45640 PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 6.6e-30
Identity = 75/142 (52.82%), Postives = 91/142 (64.08%), Query Frame = 0


Query: 5   AEAPRRAYGALPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVR 64
           AEA RR  G  P  P        PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVR
Sbjct: 2   AEAARRQGGGRPLPPPPRGVNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDYAVR 61

Query: 65  GKEPRDE-----------------VKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKT 123
           GKEP+DE                 VKEV+  ARRRNA+LSFA VYP+  G + +REVG+T
Sbjct: 62  GKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREVGET 121

[Close]

BLAST of HG10013055 vs. ExPASy Swiss-Prot
Match: Q3T022 (Histone deacetylase complex subunit SAP18 OS=Bos taurus OX=9913 GN=SAP18 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.1e-12
Identity = 44/113 (38.94%), Postives = 58/113 (51.33%), Query Frame = 0


Query: 28  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVA 87
           +P+DREKTCPLLLRVFT     H   D   RG  P  E                 VKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 88  PEARRRNAKLSFALVYPD-RHGRFVLREVGKTFSFGNGRLDDSLALAELGFQV 123
           PEAR++    +FA+V+ D +   + ++E+G T S G    DDS+ L    FQ+
Sbjct: 78  PEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMS-GRKGTDDSMTLQSQKFQI 129

[Close]

BLAST of HG10013055 vs. ExPASy Swiss-Prot
Match: O00422 (Histone deacetylase complex subunit SAP18 OS=Homo sapiens OX=9606 GN=SAP18 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.1e-12
Identity = 44/113 (38.94%), Postives = 58/113 (51.33%), Query Frame = 0


Query: 28  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVA 87
           +P+DREKTCPLLLRVFT     H   D   RG  P  E                 VKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 88  PEARRRNAKLSFALVYPD-RHGRFVLREVGKTFSFGNGRLDDSLALAELGFQV 123
           PEAR++    +FA+V+ D +   + ++E+G T S G    DDS+ L    FQ+
Sbjct: 78  PEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS-GRKGTDDSMTLQSQKFQI 129

[Close]

BLAST of HG10013055 vs. ExPASy Swiss-Prot
Match: Q5RDT5 (Histone deacetylase complex subunit SAP18 OS=Pongo abelii OX=9601 GN=SAP18 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.1e-12
Identity = 44/113 (38.94%), Postives = 58/113 (51.33%), Query Frame = 0


Query: 28  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVA 87
           +P+DREKTCPLLLRVFT     H   D   RG  P  E                 VKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 88  PEARRRNAKLSFALVYPD-RHGRFVLREVGKTFSFGNGRLDDSLALAELGFQV 123
           PEAR++    +FA+V+ D +   + ++E+G T S G    DDS+ L    FQ+
Sbjct: 78  PEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS-GRKGTDDSMTLQSQKFQI 129

[Close]

BLAST of HG10013055 vs. ExPASy Swiss-Prot
Match: O55128 (Histone deacetylase complex subunit SAP18 OS=Mus musculus OX=10090 GN=Sap18 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.8e-12
Identity = 44/113 (38.94%), Postives = 58/113 (51.33%), Query Frame = 0


Query: 28  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVA 87
           +P+DREKTCPLLLRVFT     H   D   RG  P  E                 VKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 88  PEARRRNAKLSFALVYPD-RHGRFVLREVGKTFSFGNGRLDDSLALAELGFQV 123
           PEAR++    +FA+V+ D +   + ++E+G T S G    DDS+ L    FQ+
Sbjct: 78  PEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMS-GRKGTDDSMTLQSQKFQI 129

[Close]

BLAST of HG10013055 vs. ExPASy TrEMBL
Match: A0A6J1IFF7 (histone deacetylase complex subunit SAP18-like OS=Cucurbita maxima OX=3661 GN=LOC111472759 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 6.6e-57
Identity = 117/139 (84.17%), Postives = 120/139 (86.33%), Query Frame = 0


Query: 1   MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
           MAGEAEAPRRAYGA PRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK
Sbjct: 24  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83

Query: 61  EPRDE-----------------VKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKTFS 120
           EPRDE                 VKEVAPEARRRNAKLSFALVYPDRHGRFV+REVGKTFS
Sbjct: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143

Query: 121 FGNGRLDDSLALAELGFQV 123
           FGNGR DD+LALAELGFQ+
Sbjct: 144 FGNGRSDDNLALAELGFQI 162

[Close]

BLAST of HG10013055 vs. ExPASy TrEMBL
Match: A0A6J1FXI8 (histone deacetylase complex subunit SAP18-like OS=Cucurbita moschata OX=3662 GN=LOC111448519 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 6.6e-57
Identity = 117/139 (84.17%), Postives = 120/139 (86.33%), Query Frame = 0


Query: 1   MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
           MAGEAEAPRRAYGA PRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK
Sbjct: 24  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83

Query: 61  EPRDE-----------------VKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKTFS 120
           EPRDE                 VKEVAPEARRRNAKLSFALVYPDRHGRFV+REVGKTFS
Sbjct: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143

Query: 121 FGNGRLDDSLALAELGFQV 123
           FGNGR DD+LALAELGFQ+
Sbjct: 144 FGNGRSDDNLALAELGFQI 162

[Close]

BLAST of HG10013055 vs. ExPASy TrEMBL
Match: A0A6J1D024 (histone deacetylase complex subunit SAP18 OS=Momordica charantia OX=3673 GN=LOC111016339 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.9e-56
Identity = 115/139 (82.73%), Postives = 118/139 (84.89%), Query Frame = 0


Query: 1   MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
           MAGEAEAPRRAYGA PR PH PPRPRLEPVDREKTCPLLLRVFTK+G HHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGAPPRGPHVPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGK 60

Query: 61  EPRDE-----------------VKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKTFS 120
           EPRDE                 VKEVAPEARRRNAKLSFALVYPDRHGRFV+REVGKTFS
Sbjct: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 120

Query: 121 FGNGRLDDSLALAELGFQV 123
           FGNGRLDDSLALAELGFQ+
Sbjct: 121 FGNGRLDDSLALAELGFQI 139

[Close]

BLAST of HG10013055 vs. ExPASy TrEMBL
Match: A0A5D3D2K7 (Histone deacetylase complex subunit SAP18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G004240 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 5.6e-56
Identity = 117/139 (84.17%), Postives = 118/139 (84.89%), Query Frame = 0


Query: 1   MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
           MAGEAEAPRRAYGA PRA HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60

Query: 61  EPRDE-----------------VKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKTFS 120
           EPRDE                 VKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKTFS
Sbjct: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKTFS 120

Query: 121 FGNGRLDDSLALAELGFQV 123
           FGN RLDDSLAL ELGFQ+
Sbjct: 121 FGNRRLDDSLALGELGFQI 139

[Close]

BLAST of HG10013055 vs. ExPASy TrEMBL
Match: A0A1S3AVL4 (histone deacetylase complex subunit SAP18 OS=Cucumis melo OX=3656 GN=LOC103483322 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 5.6e-56
Identity = 117/139 (84.17%), Postives = 118/139 (84.89%), Query Frame = 0


Query: 1   MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
           MAGEAEAPRRAYGA PRA HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60

Query: 61  EPRDE-----------------VKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKTFS 120
           EPRDE                 VKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKTFS
Sbjct: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKTFS 120

Query: 121 FGNGRLDDSLALAELGFQV 123
           FGN RLDDSLAL ELGFQ+
Sbjct: 121 FGNRRLDDSLALGELGFQI 139

[Close]

BLAST of HG10013055 vs. TAIR 10
Match: AT2G45640.1 (SIN3 associated polypeptide P18 )

HSP 1 Score: 132.1 bits (331), Expect = 4.7e-31
Identity = 75/142 (52.82%), Postives = 91/142 (64.08%), Query Frame = 0


Query: 5   AEAPRRAYGALPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVR 64
           AEA RR  G  P  P        PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVR
Sbjct: 2   AEAARRQGGGRPLPPPPRGVNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDYAVR 61

Query: 65  GKEPRDE-----------------VKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKT 123
           GKEP+DE                 VKEV+  ARRRNA+LSFA VYP+  G + +REVG+T
Sbjct: 62  GKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREVGET 121

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BLAST of HG10013055 vs. TAIR 10
Match: AT2G45640.2 (SIN3 associated polypeptide P18 )

HSP 1 Score: 123.2 bits (308), Expect = 2.2e-28
Identity = 73/142 (51.41%), Postives = 88/142 (61.97%), Query Frame = 0


Query: 5   AEAPRRAYGALPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVR 64
           AEA RR  G  P  P        PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVR
Sbjct: 2   AEAARRQGGGRPLPPPPRGVNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDYAVR 61

Query: 65  GKEPRDE-----------------VKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKT 123
           GKEP+DE                 VKEV+  ARRRNA+LSFA VYP+  G +    VG+T
Sbjct: 62  GKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGY---NVGET 121

The following BLAST results are available for this feature:

BLAST of HG10013055 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879427.1	2.1e-57	85.61	histone deacetylase complex subunit SAP18 [Benincasa hispida]	[more]
XP_022943948.1	1.4e-56	84.17	histone deacetylase complex subunit SAP18-like [Cucurbita moschata] >KAG6597180....	[more]
XP_023538738.1	1.4e-56	84.17	histone deacetylase complex subunit SAP18 [Cucurbita pepo subsp. pepo]	[more]
XP_022974173.1	1.4e-56	84.17	histone deacetylase complex subunit SAP18-like [Cucurbita maxima]	[more]
XP_022147400.1	3.9e-56	82.73	histone deacetylase complex subunit SAP18 [Momordica charantia]	[more]

BLAST of HG10013055 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64644	6.6e-30	52.82	Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana OX=3702 GN=At2...	[more]
Q3T022	2.1e-12	38.94	Histone deacetylase complex subunit SAP18 OS=Bos taurus OX=9913 GN=SAP18 PE=2 SV...	[more]
O00422	2.1e-12	38.94	Histone deacetylase complex subunit SAP18 OS=Homo sapiens OX=9606 GN=SAP18 PE=1 ...	[more]
Q5RDT5	2.1e-12	38.94	Histone deacetylase complex subunit SAP18 OS=Pongo abelii OX=9601 GN=SAP18 PE=2 ...	[more]
O55128	2.8e-12	38.94	Histone deacetylase complex subunit SAP18 OS=Mus musculus OX=10090 GN=Sap18 PE=1...	[more]

BLAST of HG10013055 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IFF7	6.6e-57	84.17	histone deacetylase complex subunit SAP18-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1FXI8	6.6e-57	84.17	histone deacetylase complex subunit SAP18-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1D024	1.9e-56	82.73	histone deacetylase complex subunit SAP18 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A5D3D2K7	5.6e-56	84.17	Histone deacetylase complex subunit SAP18 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3AVL4	5.6e-56	84.17	histone deacetylase complex subunit SAP18 OS=Cucumis melo OX=3656 GN=LOC10348332...	[more]

BLAST of HG10013055 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45640.1	4.7e-31	52.82	SIN3 associated polypeptide P18	[more]
AT2G45640.2	2.2e-28	51.41	SIN3 associated polypeptide P18	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010516	Sin3 associated polypeptide p18	PFAM	PF06487	SAP18	coord: 29..67 e-value: 5.7E-9 score: 36.3 coord: 68..108 e-value: 4.3E-5 score: 23.7
IPR010516	Sin3 associated polypeptide p18	PANTHER	PTHR13082	SAP18	coord: 64..123
IPR010516	Sin3 associated polypeptide p18	PANTHER	PTHR13082	SAP18	coord: 16..67
IPR042534	Sin3 associated polypeptide p18 superfamily	GENE3D	3.10.20.550	ASAP complex, SAP18 subunit	coord: 20..124 e-value: 4.3E-18 score: 67.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	PANTHER	PTHR13082:SF4	DEACETYLASE COMPLEX SUBUNIT SAP18, PUTATIVE-RELATED	coord: 64..123
None	No IPR available	PANTHER	PTHR13082:SF4	DEACETYLASE COMPLEX SUBUNIT SAP18, PUTATIVE-RELATED	coord: 16..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10013055.1	HG10013055.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003714	transcription corepressor activity