HG10012986 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10012986
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	late embryogenesis abundant protein 6-like
Location	Chr01: 25912127 .. 25912699 (+)
RNA-Seq Expression	HG10012986
Synteny	HG10012986

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGCAGTTAAGGATAAGCTACACGACATGAGCGTCATGCGCAAGGCCAAAGCCGAGGCAAAGGCCGAAGAGAAGGTGAGCTCTCAATAATGTCGAGTTTAATTGTATTATTGAAAATATTTCAATTCAAATGTCAACTTAAACATAGTTGATCACATGGTTAAGGCATATATCTTAGCATCGATCAAAGAGGTTTGTAATCAAAGAGGTTTGTAATTTGAATGATGAATTTTGATTTTATTTTTTATTTTTTATTTTTTTTGAATGGTGAATTATTGGCAGGCAGAGAAGGAGTTAGCAAAGGCAAGAGTAGAAGTGGCTCATGAGGTAAGATTGGCAAGAGAGGCTGAAGCTGCAATGGATCTTCATGTAGCCAAAGCTGGAATGAAGGCTGAGAAAGAAATGGCTAAGTATGCCAATATTCACACCAATACCTTTGTGGCTCCCGGCGGCACCACCGCTCCCGATTGCATCGCCAACATGGCTGCCGCTCCTGGCATAACTATGGTCGGAGCCCCCGGCACAGTCGACATGGCCGGACCTCTTCCCGTTAATAAGAAGTTACTGTAA

mRNA sequence

ATGCAAGCAGTTAAGGATAAGCTACACGACATGAGCGTCATGCGCAAGGCCAAAGCCGAGGCAAAGGCCGAAGAGAAGGCAGAGAAGGAGTTAGCAAAGGCAAGAGTAGAAGTGGCTCATGAGGTAAGATTGGCAAGAGAGGCTGAAGCTGCAATGGATCTTCATGTAGCCAAAGCTGGAATGAAGGCTGAGAAAGAAATGGCTAAGTATGCCAATATTCACACCAATACCTTTGTGGCTCCCGGCGGCACCACCGCTCCCGATTGCATCGCCAACATGGCTGCCGCTCCTGGCATAACTATGGTCGGAGCCCCCGGCACAGTCGACATGGCCGGACCTCTTCCCGTTAATAAGAAGTTACTGTAA

Coding sequence (CDS)

ATGCAAGCAGTTAAGGATAAGCTACACGACATGAGCGTCATGCGCAAGGCCAAAGCCGAGGCAAAGGCCGAAGAGAAGGCAGAGAAGGAGTTAGCAAAGGCAAGAGTAGAAGTGGCTCATGAGGTAAGATTGGCAAGAGAGGCTGAAGCTGCAATGGATCTTCATGTAGCCAAAGCTGGAATGAAGGCTGAGAAAGAAATGGCTAAGTATGCCAATATTCACACCAATACCTTTGTGGCTCCCGGCGGCACCACCGCTCCCGATTGCATCGCCAACATGGCTGCCGCTCCTGGCATAACTATGGTCGGAGCCCCCGGCACAGTCGACATGGCCGGACCTCTTCCCGTTAATAAGAAGTTACTGTAA

Protein sequence

MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYANIHTNTFVAPGGTTAPDCIANMAAAPGITMVGAPGTVDMAGPLPVNKKLL

Homology

[Close]

BLAST of HG10012986 vs. NCBI nr
Match: XP_038878054.1 (late embryogenesis abundant protein 6-like [Benincasa hispida])

HSP 1 Score: 192.6 bits (488), Expect = 2.0e-45
Identity = 106/121 (87.60%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
           MQAVKDKLHD+SVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG
Sbjct: 1   MQAVKDKLHDISVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MKAEKEMAKYANIHTNTFVAPGGTTAPDCIANMAAAPGITMVGAPGTVDMAGPLPVNKKL 120
           MKAEKEM KYAN HT+TFVAPGGT A DC A+MA APG+T+V APGTV+MAG  PVNKKL
Sbjct: 61  MKAEKEMTKYANTHTHTFVAPGGTAALDCTADMAVAPGVTIVNAPGTVNMAGAPPVNKKL 120

Query: 121 L 122
           L
Sbjct: 121 L 121

[Close]

BLAST of HG10012986 vs. NCBI nr
Match: XP_008438228.1 (PREDICTED: uncharacterized protein LOC103483397 [Cucumis melo] >KAA0049075.1 late embryogenesis abundant protein [Cucumis melo var. makuwa] >TYK17488.1 late embryogenesis abundant protein [Cucumis melo var. makuwa])

HSP 1 Score: 189.5 bits (480), Expect = 1.7e-44
Identity = 109/123 (88.62%), Postives = 113/123 (91.87%), Query Frame = 0


Query: 1   MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
           MQAVK+KLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG
Sbjct: 1   MQAVKEKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MKAEKEMAKYANIHTNTFVAPGGT-TAPDCIANMAAAPGITMVGAPGTVDMAG-PLPVNK 120
           MKAEKEMAKYA+ HTNTFVAPGGT T PD  AN+  APG+TMVGAPGTVDMAG P P NK
Sbjct: 61  MKAEKEMAKYADTHTNTFVAPGGTVTPPDYSANVPVAPGMTMVGAPGTVDMAGAPSPANK 120

Query: 121 KLL 122
           KLL
Sbjct: 121 KLL 123

[Close]

BLAST of HG10012986 vs. NCBI nr
Match: XP_004134355.1 (late embryogenesis abundant protein 6 [Cucumis sativus] >KGN56644.1 hypothetical protein Csa_011484 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 4.6e-42
Identity = 106/123 (86.18%), Postives = 113/123 (91.87%), Query Frame = 0


Query: 1   MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
           MQAV++KLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG
Sbjct: 1   MQAVREKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MKAEKEMAKYANIHTNTFVAPGGTTA-PDCIANMAAAPGITMVGAPGTVDMAG-PLPVNK 120
           MKAEKEMAKYA+ HTNTFV+PGGTT  PD   ++  APG+TMVGAPGTVDMAG P PVNK
Sbjct: 61  MKAEKEMAKYADTHTNTFVSPGGTTTLPD--YSVPVAPGMTMVGAPGTVDMAGAPSPVNK 120

Query: 121 KLL 122
           KLL
Sbjct: 121 KLL 121

[Close]

BLAST of HG10012986 vs. NCBI nr
Match: XP_022924652.1 (late embryogenesis abundant protein 6-like [Cucurbita moschata] >XP_022924653.1 late embryogenesis abundant protein 6-like [Cucurbita moschata] >KAG6582534.1 Late embryogenesis abundant protein 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167.2 bits (422), Expect = 9.0e-38
Identity = 97/122 (79.51%), Postives = 106/122 (86.89%), Query Frame = 0


Query: 1   MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
           MQAV+DKLHD++ MRKAK+EAKAEEKAEKELAKARVEVAHEVRLAREAEAAM LHVAKAG
Sbjct: 1   MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG 60

Query: 61  MKAEKEMAKYANIHTNTFVAPG-GTTAPDCIANMAAAPGITMVGAPGTVDMAGPLPVNKK 120
            +AEKEMAK+AN HTN FVAPG GTT      N+A APG+TMVGAPGTVDMAGP  V+KK
Sbjct: 61  KRAEKEMAKHANAHTNIFVAPGDGTT-----TNVATAPGVTMVGAPGTVDMAGPHTVHKK 117

Query: 121 LL 122
            L
Sbjct: 121 TL 117

[Close]

BLAST of HG10012986 vs. NCBI nr
Match: XP_022980446.1 (late embryogenesis abundant protein 6-like [Cucurbita maxima] >XP_022980447.1 late embryogenesis abundant protein 6-like [Cucurbita maxima] >XP_022980448.1 late embryogenesis abundant protein 6-like [Cucurbita maxima] >XP_022980449.1 late embryogenesis abundant protein 6-like [Cucurbita maxima])

HSP 1 Score: 165.6 bits (418), Expect = 2.6e-37
Identity = 96/122 (78.69%), Postives = 105/122 (86.07%), Query Frame = 0


Query: 1   MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
           MQAV+DKLHD++ MRKAK+EAKAEEKAEKELAKARVEVAHEVRLAREAEAAM LHVAKAG
Sbjct: 1   MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG 60

Query: 61  MKAEKEMAKYANIHTNTFVAPG-GTTAPDCIANMAAAPGITMVGAPGTVDMAGPLPVNKK 120
            +AEKEMAK+AN HTN FVAPG GTT      N+A APG+TMVGAPGTVDM GP  V+KK
Sbjct: 61  KRAEKEMAKHANAHTNIFVAPGDGTT-----TNVATAPGVTMVGAPGTVDMVGPHTVHKK 117

Query: 121 LL 122
            L
Sbjct: 121 TL 117

[Close]

BLAST of HG10012986 vs. ExPASy Swiss-Prot
Match: Q39138 (Late embryogenesis abundant protein 6 OS=Arabidopsis thaliana OX=3702 GN=LEA6 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.5e-06
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 1  MQAVKDKLHDMSVMRKAK---AEAKAEEKAEKELA--KARVEVAHEVRLAREAEAAMDLH 60
          MQ+ K K+ DM+   K K    +AKA+EKAE+ +A  K   E+AH+ R A+EAEA MD+H
Sbjct: 1  MQSAKQKISDMASTAKEKMVICQAKADEKAERAMARTKEEKEIAHQRRKAKEAEANMDMH 60

Query: 61 VAKAGMKAEKEMAKYANIH 75
          +AKA    +K MAK ++ H
Sbjct: 61 MAKAAHAEDKLMAKQSHYH 79

[Close]

BLAST of HG10012986 vs. ExPASy TrEMBL
Match: A0A5A7U624 (Late embryogenesis abundant protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003530 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 8.2e-45
Identity = 109/123 (88.62%), Postives = 113/123 (91.87%), Query Frame = 0


Query: 1   MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
           MQAVK+KLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG
Sbjct: 1   MQAVKEKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MKAEKEMAKYANIHTNTFVAPGGT-TAPDCIANMAAAPGITMVGAPGTVDMAG-PLPVNK 120
           MKAEKEMAKYA+ HTNTFVAPGGT T PD  AN+  APG+TMVGAPGTVDMAG P P NK
Sbjct: 61  MKAEKEMAKYADTHTNTFVAPGGTVTPPDYSANVPVAPGMTMVGAPGTVDMAGAPSPANK 120

Query: 121 KLL 122
           KLL
Sbjct: 121 KLL 123

[Close]

BLAST of HG10012986 vs. ExPASy TrEMBL
Match: A0A1S3AWI7 (uncharacterized protein LOC103483397 OS=Cucumis melo OX=3656 GN=LOC103483397 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 8.2e-45
Identity = 109/123 (88.62%), Postives = 113/123 (91.87%), Query Frame = 0


Query: 1   MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
           MQAVK+KLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG
Sbjct: 1   MQAVKEKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MKAEKEMAKYANIHTNTFVAPGGT-TAPDCIANMAAAPGITMVGAPGTVDMAG-PLPVNK 120
           MKAEKEMAKYA+ HTNTFVAPGGT T PD  AN+  APG+TMVGAPGTVDMAG P P NK
Sbjct: 61  MKAEKEMAKYADTHTNTFVAPGGTVTPPDYSANVPVAPGMTMVGAPGTVDMAGAPSPANK 120

Query: 121 KLL 122
           KLL
Sbjct: 121 KLL 123

[Close]

BLAST of HG10012986 vs. ExPASy TrEMBL
Match: A0A0A0L6I7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127070 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.2e-42
Identity = 106/123 (86.18%), Postives = 113/123 (91.87%), Query Frame = 0


Query: 1   MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
           MQAV++KLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG
Sbjct: 1   MQAVREKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MKAEKEMAKYANIHTNTFVAPGGTTA-PDCIANMAAAPGITMVGAPGTVDMAG-PLPVNK 120
           MKAEKEMAKYA+ HTNTFV+PGGTT  PD   ++  APG+TMVGAPGTVDMAG P PVNK
Sbjct: 61  MKAEKEMAKYADTHTNTFVSPGGTTTLPD--YSVPVAPGMTMVGAPGTVDMAGAPSPVNK 120

Query: 121 KLL 122
           KLL
Sbjct: 121 KLL 121

[Close]

BLAST of HG10012986 vs. ExPASy TrEMBL
Match: A0A6J1ED39 (late embryogenesis abundant protein 6-like OS=Cucurbita moschata OX=3662 GN=LOC111432084 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.4e-38
Identity = 97/122 (79.51%), Postives = 106/122 (86.89%), Query Frame = 0


Query: 1   MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
           MQAV+DKLHD++ MRKAK+EAKAEEKAEKELAKARVEVAHEVRLAREAEAAM LHVAKAG
Sbjct: 1   MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG 60

Query: 61  MKAEKEMAKYANIHTNTFVAPG-GTTAPDCIANMAAAPGITMVGAPGTVDMAGPLPVNKK 120
            +AEKEMAK+AN HTN FVAPG GTT      N+A APG+TMVGAPGTVDMAGP  V+KK
Sbjct: 61  KRAEKEMAKHANAHTNIFVAPGDGTT-----TNVATAPGVTMVGAPGTVDMAGPHTVHKK 117

Query: 121 LL 122
            L
Sbjct: 121 TL 117

[Close]

BLAST of HG10012986 vs. ExPASy TrEMBL
Match: A0A6J1IRE5 (late embryogenesis abundant protein 6-like OS=Cucurbita maxima OX=3661 GN=LOC111479813 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.3e-37
Identity = 96/122 (78.69%), Postives = 105/122 (86.07%), Query Frame = 0


Query: 1   MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
           MQAV+DKLHD++ MRKAK+EAKAEEKAEKELAKARVEVAHEVRLAREAEAAM LHVAKAG
Sbjct: 1   MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG 60

Query: 61  MKAEKEMAKYANIHTNTFVAPG-GTTAPDCIANMAAAPGITMVGAPGTVDMAGPLPVNKK 120
            +AEKEMAK+AN HTN FVAPG GTT      N+A APG+TMVGAPGTVDM GP  V+KK
Sbjct: 61  KRAEKEMAKHANAHTNIFVAPGDGTT-----TNVATAPGVTMVGAPGTVDMVGPHTVHKK 117

Query: 121 LL 122
            L
Sbjct: 121 TL 117

[Close]

BLAST of HG10012986 vs. TAIR 10
Match: AT1G32560.1 (Late embryogenesis abundant protein, group 1 protein )

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-07
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 1  MQAVKDKLHDMSVMRKAK---AEAKAEEKAEKELA--KARVEVAHEVRLAREAEAAMDLH 60
          MQ+ K K+ DM+   K K    +AKA+EKAE+ +A  K   E+AH+ R A+EAEA MD+H
Sbjct: 1  MQSAKQKISDMASTAKEKMVICQAKADEKAERAMARTKEEKEIAHQRRKAKEAEANMDMH 60

Query: 61 VAKAGMKAEKEMAKYANIH 75
          +AKA    +K MAK ++ H
Sbjct: 61 MAKAAHAEDKLMAKQSHYH 79

The following BLAST results are available for this feature:

BLAST of HG10012986 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878054.1	2.0e-45	87.60	late embryogenesis abundant protein 6-like [Benincasa hispida]	[more]
XP_008438228.1	1.7e-44	88.62	PREDICTED: uncharacterized protein LOC103483397 [Cucumis melo] >KAA0049075.1 lat...	[more]
XP_004134355.1	4.6e-42	86.18	late embryogenesis abundant protein 6 [Cucumis sativus] >KGN56644.1 hypothetical...	[more]
XP_022924652.1	9.0e-38	79.51	late embryogenesis abundant protein 6-like [Cucurbita moschata] >XP_022924653.1 ...	[more]
XP_022980446.1	2.6e-37	78.69	late embryogenesis abundant protein 6-like [Cucurbita maxima] >XP_022980447.1 la...	[more]

BLAST of HG10012986 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39138	2.5e-06	46.84	Late embryogenesis abundant protein 6 OS=Arabidopsis thaliana OX=3702 GN=LEA6 PE...	[more]

BLAST of HG10012986 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U624	8.2e-45	88.62	Late embryogenesis abundant protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3AWI7	8.2e-45	88.62	uncharacterized protein LOC103483397 OS=Cucumis melo OX=3656 GN=LOC103483397 PE=...	[more]
A0A0A0L6I7	2.2e-42	86.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127070 PE=3 SV=1	[more]
A0A6J1ED39	4.4e-38	79.51	late embryogenesis abundant protein 6-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1IRE5	1.3e-37	78.69	late embryogenesis abundant protein 6-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of HG10012986 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32560.1	1.8e-07	46.84	Late embryogenesis abundant protein, group 1 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 14..37
None	No IPR available	PANTHER	PTHR33493:SF3	LATE EMBRYOGENESIS ABUNDANT PROTEIN	coord: 1..82
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PFAM	PF03760	LEA_1	coord: 1..66 e-value: 7.3E-15 score: 55.4
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PANTHER	PTHR33493	LATE EMBRYOGENESIS ABUNDANT PROTEIN 6-RELATED	coord: 1..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10012986.1	HG10012986.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy