HG10012823 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10012823
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	multiple organellar RNA editing factor 2, chloroplastic-like
Location	Chr01: 24521299 .. 24526636 (-)
RNA-Seq Expression	HG10012823
Synteny	HG10012823

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCGCCTCCACCTCCACTGCCCGCCTCTCTCTTCTTCACAGACGCCTCTTCTCCTCCTCAACTACTCTTACACATCCTCCTTCACCCCCTTCTCTCACTCTCTGCCGTCGATCTCTCCCTCCCCTTTCCCATGCCGTTCGATCTATCCCTTCCGCCTCCAGGTTCACCTCTATTCGTTGCCGCGTCAATCGCTCAGGTAACTCGTCTTACTCTCCCCTTAACTCTAATTCCAACTTCAGTGATCGTCCACCCACTGAGATGGCGCCTCTTTTCCCTGGATGTGACTATGAGCACTGGCTCATTGTCATGGACAAGCCTGGTGGTGAGGGTGCCACTAAGCAGCAGATGATCGATTGCTACATTCAGACCCTCGCTAAAGTTGTTGGCAGGTACTTTTGATTATATCATGCTTCATCTTTCTGATTTGTTTGCGCTATCTGTTGGTTTCTGGTTTGATTTTGGCCCTGTTTTTGTGTTTTGAGCAGTGAAGAGGAAGCGAAGAAGAAGATTTATAATGTGTCTTGTGAGAGGTATTTTGGGTTTGGGTGTGAGCTTGATGAAGAGACCTCCAACAAGCTCGAAGGTATGTGTTGTGTTGAGGTCAATTATCATCAGTTTTCGTCTTCTTGTGCTATAACGTACGGGCCATGATTTCCTTTCTCGCATTTCAATTATTTCTAAGGCAATGGGAAGTTATTGGAGGGATGGATAACTGTGAAGCTGTGTGTCATTTCTCTATATTGAAATTTGTGGTGCTTGTATTTGATGATTTTTGTTGGAATCTTTGTCAACAGGCTTGCCAGGCGTTCTGTTTGTTCTTCCTGATTCTTATGTCGACCCTGAGTATAAAGACTATGGGGGTAAGGATCTAAAACTTATCGTTTTTTTTTTCTTTCATTTTTTGGGTTTCGCATCAAATCGCAATCAAAGAGTTCATGAGAGATAATGATATTGACACCTAGAAGGTCCATCTTAGCAGAGTAGCTTTCAGCCAATTGTGGGTTTTTAATTGATGGACTTATTAATATCATGCTTCGCTATTTTGTGCTTGATTCTCATCGTGGAGATGAAACATAATCCTATTCCAGCTCATAGTGGACTGACACCCGTTTGAACATGCTATGTTATAATAATCTGTTTATAAGCATTGTTGTAACCTTAAGTATTGACAATTTGAGCATATGTAAGAAATTAAAGTCCATCTTGGCAAAGCTAATCCAGTCTTTTAGACAATGTTTAGTTTTGAATGCTAATGGACTTAGAATAAATGTCACTCTTGATCGTCCTGCTCTTTATATTCTTTCTGGAGATTCAGGCCAGTAGAGATGAAACATTATCTATGTTTATCATGCATTGATATGCGTTCTAACTAATCATCCTTAATATTGTGTTCATATTTTATAAATATTATCTTCACATCTTAAAAAGTGCGAGAAACATGACTTGTGGATGCAAACAGGAAAAGTTTTGATAGAGTCCATCTTGGCAAAGCTAAATCAGTCATTTAGGCAATGTTTAATTTTGAATGCTAATGGACTCACAACAAATGCACTCTAGACTGTTCTGAGCTTTATATATATTGTGGAGATTCAGATCATTAGAGATGATACATTGACTTTGCATATTCATTGAAATTTATTTGAAGTGCTTTTTGTTTAACCTCATTCTCATTTCATTAGCTTTGTTTTGATGGTATGAAAGAGTTTGCTCCTCACTAGGAAATTATCGAATAGGTTACAGTCCATCTTGGCAAATCTAAATTAGTCCTTTGGACAATGTTTAGCTTTGAATGCTAATGGACTTACAACAAATGTCTCTCTTGACTGTTCTGTGCTCTTTATATTTTGTGGAGATGCAGATCAGTAGAGATGAAACATTAAGGCCTGCTTACAATGTTTTGTTAAATAGCTTTCTAGGAACCTATATATGGAGGTGAAACTTTACTGTGACTGTATTGAGAAGTTTTTGAAGAAAAAGAGATTGCTATTCGTCTTGCAATAGGTTTCCTTGTTGCATGTTCACAGTCCATCTTGGCAAACCTAAACCAGTCTTTCAGACAATGTTTAGTTTTGAATGCTAATGGACTTACATCAAATGTCTCTCTTGACTGTTCTGTGCTCTTTTTACTTTGTGGAGATGCAGATCAGTAGAGATGAAACATTAAAGTTTGTTTAAATGTATCTAAGTCTATCTTTGTAGTGTTTGGTTATGATTCCTGATAAATTATGCCAAATTGCTTTCTTGCATCACATATTTGTAGTAGTTGAAGATGAAGCTTGTGGTTGACAGTAAAAACGAAGGGTTATTTAATGAATGTGTGTAGTCCATCTTGGCAAACCTAAATCAGTCTTCAAGACAATGTTTAGTTTTGAATGCTAATGGGCTTAACAGTAATTGTCTCTCTTAGACTGTTCTGTGCTCTTTATACTTTGTGGAGATGCAGATCAGTAGAGAAGAAACATCCTAGCTTGAAACCATCTCAATTCATGGAGCATAGTAATTTTGTTGGTTGAGGAGGTCTAGTTTTTGTGCTCATATTTGATAAACTTGTAGATTGTTAGGAGTTGATAGATGTTGAGTGTCATCATGATATAATGCTAACCCTTCTGATTGTGGTGTTGGTTGCAGCTGAGTTGTTCGTGAATGGAGAGATTGTTCAAAGGTCACCAGAAAGACAGAGAAGGGTGGATCCACAGCCTCAGAGAGTTCAAGATAGACCGAAGTATAGCGACAGGACCCGCTATGTGAGACGCAGAGAAAACATGAGGTGATGCATTTGAGACGTTGAGAAAATGTGCATATATGACTAAAGGGGGAAGGGAAGGGAATCTTGAATATCTGGGAAGGCAAATTGGAGATTGCTACGTAAAAGAGTCAGTCATGTTCAGTAGGATGTTAACTTTTGTTGTTGATGAACATGGATAAATATCTATATGGCCTGTCATAATAGTCTTCTTCCTAAGTGAATGTTTATTGAGTTCGTTTAGTTGTAAAACGGTGCACGTTGAAGTTTATAAGAAACTGTGCGTTATTCTTTGCCACAATGTTGCTCTGTAGTGGACATGTGCGCGTTAATGGAAGGTTAGATGTAGCCTTATTCAAAGGCTTTGAACTTTCATTTCTTAGCTCTCTAAAATTTGCTACCATCTAACCTTCATGAAAATTTAATATAAAGCTTGAGAAACTTTGCAAGTGGCCCGATGATGTTGAAATTTTCTCTATCTTTACTATGGTGGTTGAGGTATTTAAATCTCTTCGGAAGGAGATTATGCGGTTGCAAAAGCTTCTTCTGAAGGTATGGGATTAAATTGATTTATGCATTTTTCTTCTTTGGGTTATAAATTCAATAGTGTTTTTTTTTCCTCTCTTCTTTATTTCATTCATTTAGTACGAATATAAATGAAGAGAATGAAGATTTGAATCCTTTACTTAGAAGAAAGGAGTATGTGCCAATTACTCTTAAGTAGGCTTATTGTCATGTGATTATGATTTCAAACGACCAATACATGCGGTACTTGAGTGATCTTGCTTTTAAAGATGCATCAAATAAACCTTCAAGAATGTTTTTGTCTCCCTAGCAACAAAGGGATTCAAAGAGAGGTTAGACAAACTCAACACATAGAACAAGTAGGTAAGTAGAGAGAGCTTTGATTAGGTTTTCCAACATTGTGTTACAAATGAGCTCCTTTGGAGTATTTATAGTCCTCCACCTCCTTAACCTTGTGTTACAAATGAGCCCTGATATTTATAGTTCTCCACATCCTTAATAGACGGTGAGGATTGTTTTGATCCAATAGTTAGGATCTTTCTTTTAAATTCTTTCTATACAATTCCATACTTCTCAAAACATGCTAGCCTTCCTAAATCTTTTTAGAATAATTACATGCTAGCTCTTCCTATACTTCTATAGAACTCTCTAGAAGCATCTAGCATCTAGGATATTTGTACATTTAACTTTCTACAACTCCCTAGTATTTTGGAAGTTTCCAGACAATTTGCATATTATGATGGGTCTAAGCCCATGATGGCCTTGGATTGGGCCTCTCCTTCATGGACATGCTTGTAGAGTTGGGCCAATCCTTGGAAAATTTGTTGGGCCGTAACATTATGCTCACTTTGGCTACTTGTTTATGGTAGTGTGTAAATAATATTTTTAATTTGTCTTGCACTTAGCTTAAATAAAATTAATGTTTCTCATGAATGCTATAACATGAGAAATCTATTCCATGAATAATATTTTTTAGTTGAACAACATATGAAATAAGATATTCAAACCTTTCAACTAACGTTTAAACTAGTTGAGTGCTTTTAAAAGTGTATAATTTCTTTATATTACAAAAAGGAAAAATTGTAGTATAATGTCTATAATCAGTATTCAGAAGTCTATTTTCTGATGTTCTAAATTATTAAAAGTTCAAAATATTTTTAAAAAATAGCAAAAAGTGACATAAAAGTTATAACACTTAGTTGATAAATAATAATAATAATAATAATTGATGGGCTTTTACTTGACCTTCCATCCTGAGCCCAAACAGCATTATCCAGCCCAACAACAAAAGAAGCTTATCCCCTTCTCCTTCAGAAACTCAACCAGACGTTTCTCCAACTTACAAAGATAACCATCACTCCACACATAAACTCTCCTCACTAACAATGGCGGCTTCCGTCGTCTTAGGCTTCACGCCGGCCACTTCTTCCGGTGTAATGGCACTCTCCTCAACTAAACTTCACTTCAGAACTAAAGCGAATTCCCAGCTAGGGTTTCTTACTTCTCAATTGGCTGGCATCAAAATCTCCTCCAACCACTCGCTGATCTCCCCCTCTCCCATTTCTACTGCTCCTCTCAGACCTCCCCTTCAACCTGTTGCTCGTAATATTCCCTCTTCTCAACTCTTGCTTAATATTTTTCATTTTCTGGTATTTCATTGTTCGACTTCGACCCTTTTTGGGCTCTAATTGCATGGCTAAAGCATTTGACTATTTGAATTAGGTTTTTCTTAATCACCCATGTTCTGATTCCAATTTCTATTTGAATTGGAATGTTGTGGGAATTGGGAAGCACATCTCAAACTTGGTGGTTTCATTATTTGTTGTTTCAGGTAGAGTTTGTCCCTTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAGAAGTTGCAGTTTGTAAATCTTCAATACAAGAAGGTTTGGTGGGAAGCTGGGAAGCGTTTTGTCAAACTACGCTTGTCAACTAAGGCTTTGAAGACCATTGAGAAGAATGGACTTGATGCTGTGGCTAAGAAGGCTGGAATTGATCTTCGTAAGGAATGA

mRNA sequence

ATGGCTTCCGCCTCCACCTCCACTGCCCGCCTCTCTCTTCTTCACAGACGCCTCTTCTCCTCCTCAACTACTCTTACACATCCTCCTTCACCCCCTTCTCTCACTCTCTGCCGTCGATCTCTCCCTCCCCTTTCCCATGCCGTTCGATCTATCCCTTCCGCCTCCAGGTTCACCTCTATTCGTTGCCGCGTCAATCGCTCAGGTAACTCGTCTTACTCTCCCCTTAACTCTAATTCCAACTTCAGTGATCGTCCACCCACTGAGATGGCGCCTCTTTTCCCTGGATGTGACTATGAGCACTGGCTCATTGTCATGGACAAGCCTGGTGGTGAGGGTGCCACTAAGCAGCAGATGATCGATTGCTACATTCAGACCCTCGCTAAAGTTGTTGGCAGTGAAGAGGAAGCGAAGAAGAAGATTTATAATGTGTCTTGTGAGAGGTATTTTGGGTTTGGGTGTGAGCTTGATGAAGAGACCTCCAACAAGCTCGAAGGCTTGCCAGGCGTTCTGTTTGTTCTTCCTGATTCTTATGTCGACCCTGAGTATAAAGACTATGGGGCTGAGTTGTTCGTGAATGGAGAGATTGTTCAAAGGTCACCAGAAAGACAGAGAAGGGTGGATCCACAGCCTCAGAGAGTTCAAGATAGACCGAAGTATAGCGACAGGACCCGCTATGTGAGACGCAGAGAAAACATGAGCATTATCCAGCCCAACAACAAAAGAAGCTTATCCCCTTCTCCTTCAGAAACTCAACCAGACGTTTCTCCAACTTACAAAGATAACCATCACTCCACACATAAACTCTCCTCACTAACAATGGCGGCTTCCGTCGTCTTAGGCTTCACGCCGGCCACTTCTTCCGGTGTAATGGCACTCTCCTCAACTAAACTTCACTTCAGAACTAAAGCGAATTCCCAGCTAGGGTTTCTTACTTCTCAATTGGCTGGCATCAAAATCTCCTCCAACCACTCGCTGATCTCCCCCTCTCCCATTTCTACTGCTCCTCTCAGACCTCCCCTTCAACCTGTTGCTCGTAGAGTTTGTCCCTTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAGAAGTTGCAGTTTGTAAATCTTCAATACAAGAAGGTTTGGTGGGAAGCTGGGAAGCGTTTTGTCAAACTACGCTTGTCAACTAAGGCTTTGAAGACCATTGAGAAGAATGGACTTGATGCTGTGGCTAAGAAGGCTGGAATTGATCTTCGTAAGGAATGA

Coding sequence (CDS)

ATGGCTTCCGCCTCCACCTCCACTGCCCGCCTCTCTCTTCTTCACAGACGCCTCTTCTCCTCCTCAACTACTCTTACACATCCTCCTTCACCCCCTTCTCTCACTCTCTGCCGTCGATCTCTCCCTCCCCTTTCCCATGCCGTTCGATCTATCCCTTCCGCCTCCAGGTTCACCTCTATTCGTTGCCGCGTCAATCGCTCAGGTAACTCGTCTTACTCTCCCCTTAACTCTAATTCCAACTTCAGTGATCGTCCACCCACTGAGATGGCGCCTCTTTTCCCTGGATGTGACTATGAGCACTGGCTCATTGTCATGGACAAGCCTGGTGGTGAGGGTGCCACTAAGCAGCAGATGATCGATTGCTACATTCAGACCCTCGCTAAAGTTGTTGGCAGTGAAGAGGAAGCGAAGAAGAAGATTTATAATGTGTCTTGTGAGAGGTATTTTGGGTTTGGGTGTGAGCTTGATGAAGAGACCTCCAACAAGCTCGAAGGCTTGCCAGGCGTTCTGTTTGTTCTTCCTGATTCTTATGTCGACCCTGAGTATAAAGACTATGGGGCTGAGTTGTTCGTGAATGGAGAGATTGTTCAAAGGTCACCAGAAAGACAGAGAAGGGTGGATCCACAGCCTCAGAGAGTTCAAGATAGACCGAAGTATAGCGACAGGACCCGCTATGTGAGACGCAGAGAAAACATGAGCATTATCCAGCCCAACAACAAAAGAAGCTTATCCCCTTCTCCTTCAGAAACTCAACCAGACGTTTCTCCAACTTACAAAGATAACCATCACTCCACACATAAACTCTCCTCACTAACAATGGCGGCTTCCGTCGTCTTAGGCTTCACGCCGGCCACTTCTTCCGGTGTAATGGCACTCTCCTCAACTAAACTTCACTTCAGAACTAAAGCGAATTCCCAGCTAGGGTTTCTTACTTCTCAATTGGCTGGCATCAAAATCTCCTCCAACCACTCGCTGATCTCCCCCTCTCCCATTTCTACTGCTCCTCTCAGACCTCCCCTTCAACCTGTTGCTCGTAGAGTTTGTCCCTTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAGAAGTTGCAGTTTGTAAATCTTCAATACAAGAAGGTTTGGTGGGAAGCTGGGAAGCGTTTTGTCAAACTACGCTTGTCAACTAAGGCTTTGAAGACCATTGAGAAGAATGGACTTGATGCTGTGGCTAAGAAGGCTGGAATTGATCTTCGTAAGGAATGA

Protein sequence

MASASTSTARLSLLHRRLFSSSTTLTHPPSPPSLTLCRRSLPPLSHAVRSIPSASRFTSIRCRVNRSGNSSYSPLNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPEYKDYGAELFVNGEIVQRSPERQRRVDPQPQRVQDRPKYSDRTRYVRRRENMSIIQPNNKRSLSPSPSETQPDVSPTYKDNHHSTHKLSSLTMAASVVLGFTPATSSGVMALSSTKLHFRTKANSQLGFLTSQLAGIKISSNHSLISPSPISTAPLRPPLQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

Homology

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BLAST of HG10012823 vs. NCBI nr
Match: XP_038896418.1 (multiple organellar RNA editing factor 2, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 440.3 bits (1131), Expect = 1.9e-119
Identity = 219/229 (95.63%), Postives = 223/229 (97.38%), Query Frame = 0


Query: 3   SASTSTARLSLLHRRLFSSSTTLTHPPSPPSLTLCRRSLPPLSHAVRSIPSASRFTSIRC 62
           SAS  TARLSLL RRLFSSS+TLTHPPS PSLTLCRRSLPPLSHAVRSIPSASRFTSIRC
Sbjct: 15  SASAYTARLSLLQRRLFSSSSTLTHPPSLPSLTLCRRSLPPLSHAVRSIPSASRFTSIRC 74

Query: 63  RVNRSGNSSYSPLNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCY 122
           RVNRSGNSSYSPLNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCY
Sbjct: 75  RVNRSGNSSYSPLNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCY 134

Query: 123 IQTLAKVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPEY 182
           IQTLAKVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPEY
Sbjct: 135 IQTLAKVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPEY 194

Query: 183 KDYGAELFVNGEIVQRSPERQRRVDPQPQRVQDRPKYSDRTRYVRRREN 232
           KDYGAELFVNGEIVQR PERQRRV+PQPQR QDRP+Y+DRTRYVRRREN
Sbjct: 195 KDYGAELFVNGEIVQRPPERQRRVEPQPQRAQDRPRYNDRTRYVRRREN 243

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BLAST of HG10012823 vs. NCBI nr
Match: XP_022924432.1 (multiple organellar RNA editing factor 2, chloroplastic-like isoform X1 [Cucurbita moschata] >XP_023527331.1 multiple organellar RNA editing factor 2, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 436.8 bits (1122), Expect = 2.1e-118
Identity = 215/229 (93.89%), Postives = 223/229 (97.38%), Query Frame = 0


Query: 4   ASTSTARLSLLHRRLFSSSTTLTHPPSPPSLTLCRRSLPPLSHAVRSIPSASRFTSIRCR 63
           A  STARLSLLHRRLFSSSTTLTHPPSPPSLTLCRRSLPPLSHAVRS PSASR+TSIRCR
Sbjct: 8   AMGSTARLSLLHRRLFSSSTTLTHPPSPPSLTLCRRSLPPLSHAVRSNPSASRYTSIRCR 67

Query: 64  VNRSGNSSYSPLNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYI 123
           VNR+GNSSYSP NSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYI
Sbjct: 68  VNRTGNSSYSPQNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYI 127

Query: 124 QTLAKVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPEYK 183
           QTLAKV+GSEEEAKKKIYNVSCERYFGFGCE+DEETSNKLEGLPGVLFVLPDSYVDPE K
Sbjct: 128 QTLAKVLGSEEEAKKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPENK 187

Query: 184 DYGAELFVNGEIVQRSPERQRRVDPQPQRVQDRPKYSDRTRYVRRRENM 233
           DYGAELFVNGEIVQRSPERQRRV+PQPQR QDRP+Y+DRTR+VRRRENM
Sbjct: 188 DYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPRYNDRTRFVRRRENM 236

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BLAST of HG10012823 vs. NCBI nr
Match: XP_022149612.1 (multiple organellar RNA editing factor 2, chloroplastic-like [Momordica charantia])

HSP 1 Score: 436.8 bits (1122), Expect = 2.1e-118
Identity = 217/231 (93.94%), Postives = 224/231 (96.97%), Query Frame = 0


Query: 2   ASASTSTARLSLLHRRLFSSSTTLTHPPSPPSLTLCRRSLPPLSHAVRSIPSASRFTSIR 61
           ASASTSTARLSLL +RL SSSTTLT PPSPP+LTL RRSLPPLSHAVRSIPSASRFT IR
Sbjct: 12  ASASTSTARLSLLPKRLLSSSTTLTRPPSPPTLTLGRRSLPPLSHAVRSIPSASRFTPIR 71

Query: 62  CRVNRSGNSSYSPLNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDC 121
           CRVNRSGNS YSPLNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDC
Sbjct: 72  CRVNRSGNSGYSPLNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDC 131

Query: 122 YIQTLAKVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPE 181
           YIQTLAKVVGSEEEAKKKIYNVSCERYFGFGCE+DEETSNKLEG+PGVLFVLPDSYVDPE
Sbjct: 132 YIQTLAKVVGSEEEAKKKIYNVSCERYFGFGCEIDEETSNKLEGVPGVLFVLPDSYVDPE 191

Query: 182 YKDYGAELFVNGEIVQRSPERQRRVDPQPQRVQDRPKYSDRTRYVRRRENM 233
           YKDYGAELFVNGEIVQRSPERQRRV+PQPQR QDRP+Y+DRTRYVRRRENM
Sbjct: 192 YKDYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPRYNDRTRYVRRRENM 242

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BLAST of HG10012823 vs. NCBI nr
Match: KAG7018807.1 (Multiple organellar RNA editing factor 2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 436.8 bits (1122), Expect = 2.1e-118
Identity = 215/229 (93.89%), Postives = 223/229 (97.38%), Query Frame = 0


Query: 4   ASTSTARLSLLHRRLFSSSTTLTHPPSPPSLTLCRRSLPPLSHAVRSIPSASRFTSIRCR 63
           A  STARLSLLHRRLFSSSTTLTHPPSPPSLTLCRRSLPPLSHAVRS PSASR+TSIRCR
Sbjct: 195 AMGSTARLSLLHRRLFSSSTTLTHPPSPPSLTLCRRSLPPLSHAVRSNPSASRYTSIRCR 254

Query: 64  VNRSGNSSYSPLNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYI 123
           VNR+GNSSYSP NSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYI
Sbjct: 255 VNRTGNSSYSPQNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYI 314

Query: 124 QTLAKVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPEYK 183
           QTLAKV+GSEEEAKKKIYNVSCERYFGFGCE+DEETSNKLEGLPGVLFVLPDSYVDPE K
Sbjct: 315 QTLAKVLGSEEEAKKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPENK 374

Query: 184 DYGAELFVNGEIVQRSPERQRRVDPQPQRVQDRPKYSDRTRYVRRRENM 233
           DYGAELFVNGEIVQRSPERQRRV+PQPQR QDRP+Y+DRTR+VRRRENM
Sbjct: 375 DYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPRYNDRTRFVRRRENM 423

[Close]

BLAST of HG10012823 vs. NCBI nr
Match: XP_022979370.1 (multiple organellar RNA editing factor 2, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 430.6 bits (1106), Expect = 1.5e-116
Identity = 212/229 (92.58%), Postives = 220/229 (96.07%), Query Frame = 0


Query: 4   ASTSTARLSLLHRRLFSSSTTLTHPPSPPSLTLCRRSLPPLSHAVRSIPSASRFTSIRCR 63
           A  STARLSLLHRRLFSSSTTLTHPPSPP LTLCRRSLPPLSH VRS PSASR+TSIRCR
Sbjct: 8   AMGSTARLSLLHRRLFSSSTTLTHPPSPPFLTLCRRSLPPLSHVVRSNPSASRYTSIRCR 67

Query: 64  VNRSGNSSYSPLNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYI 123
           VNR+GNSSYSP NSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYI
Sbjct: 68  VNRTGNSSYSPQNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYI 127

Query: 124 QTLAKVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPEYK 183
           QTLAKV+GSEEEA KKIYNVSCERYFGFGCE+DEETSNKLEGLPGVLFVLPDSYVDPE K
Sbjct: 128 QTLAKVLGSEEEAMKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPENK 187

Query: 184 DYGAELFVNGEIVQRSPERQRRVDPQPQRVQDRPKYSDRTRYVRRRENM 233
           DYGAELFVNGEIVQRSPERQRRV+PQPQR QDRP+Y+DRTR+VRRRENM
Sbjct: 188 DYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPRYNDRTRFVRRRENM 236

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BLAST of HG10012823 vs. ExPASy Swiss-Prot
Match: O22793 (Multiple organellar RNA editing factor 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MORF2 PE=1 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 1.3e-89
Identity = 168/215 (78.14%), Postives = 180/215 (83.72%), Query Frame = 0


Query: 17  RLFSSSTTLTHPPSPPSLTLCRRSLPPLSHAVRSIPSASRFTSIRCRVNRSGNSSYSPLN 76
           R   S+ TL  PP  PS          + +    +  ++RF SIRC  NRSG S+YSPLN
Sbjct: 13  RALLSNVTLMAPPRIPS---------SVHYGGSRLGCSTRFFSIRCGANRSG-STYSPLN 72

Query: 77  SNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVGSEEEA 136
           S SNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVGSEEEA
Sbjct: 73  SGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVGSEEEA 132

Query: 137 KKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPEYKDYGAELFVNGEIV 196
           KK+IYNVSCERY GFGCE+DEETS KLEGLPGVLFVLPDSYVDPE KDYGAELFVNGEIV
Sbjct: 133 KKRIYNVSCERYLGFGCEIDEETSTKLEGLPGVLFVLPDSYVDPENKDYGAELFVNGEIV 192

Query: 197 QRSPERQRRVDPQPQRVQDRPKYSDRTRYVRRREN 232
           QRSPERQRRV+PQPQR QDRP+Y+DRTRY RRREN
Sbjct: 193 QRSPERQRRVEPQPQRAQDRPRYNDRTRYSRRREN 217

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BLAST of HG10012823 vs. ExPASy Swiss-Prot
Match: Q9C7Y2 (Multiple organellar RNA editing factor 5, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF5 PE=1 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 6.9e-88
Identity = 169/222 (76.13%), Postives = 186/222 (83.78%), Query Frame = 0


Query: 12  SLLHRRLFSSSTTLTHPPSPPSLTLCRRSLPPLSHAVRSIPSASRFTSIRCRVNRSGNSS 71
           S + +RL S+S   T  PS PS  L RRS P  SHAV  I S +RFT+IR R++RSG  S
Sbjct: 11  SRITKRLISTSGATT--PS-PSYILSRRSTPVFSHAVGFISSLNRFTTIRTRMDRSG-GS 70

Query: 72  YSPLNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVG 131
           YSPL S SNFSDR PTEMAPLFPGCDYEHWLIVMDKPGGE ATKQQMIDCY+QTLAK++G
Sbjct: 71  YSPLKSGSNFSDRAPTEMAPLFPGCDYEHWLIVMDKPGGENATKQQMIDCYVQTLAKIIG 130

Query: 132 SEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPEYKDYGAELFV 191
           SEEEAKKKIYNVSCERYFGFGCE+DEETSNKLEGLPGVLF+LPDSYVD E KDYGAELFV
Sbjct: 131 SEEEAKKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFILPDSYVDQENKDYGAELFV 190

Query: 192 NGEIVQRSPERQRR-VDPQPQRVQDRPKYSDRTRYVRRRENM 233
           NGEIVQR PERQR+ ++   QR  D+PKY D+TRYVRRRENM
Sbjct: 191 NGEIVQRPPERQRKIIELTTQRTNDKPKYHDKTRYVRRRENM 228

[Close]

BLAST of HG10012823 vs. ExPASy Swiss-Prot
Match: O82169 (Multiple organellar RNA editing factor 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF6 PE=1 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 2.0e-87
Identity = 168/229 (73.36%), Postives = 188/229 (82.10%), Query Frame = 0


Query: 5   STSTARLSLLHRRLFSSSTTLTHPPSPPSLTLCRRSLPPLSHAVRSIPSASRFTSIRCRV 64
           S STA  S + +R FS+S  +  P   PS  + RR  P + HAV  IP+ +RFT+IR R+
Sbjct: 6   SRSTA--SCVAKRFFSTSNAVASPSPLPSHLISRRFSPTIFHAVGYIPALTRFTTIRTRM 65

Query: 65  NRSGNSSYSPLNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQ 124
           +RSG  SYSPL S SNFSDRPPTEMAPLFPGCDYEHWLIVM+KPGGE A KQQMIDCY+Q
Sbjct: 66  DRSG-GSYSPLKSGSNFSDRPPTEMAPLFPGCDYEHWLIVMEKPGGENAQKQQMIDCYVQ 125

Query: 125 TLAKVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPEYKD 184
           TLAK+VGSEEEA+KKIYNVSCERYFGFGCE+DEETSNKLEGLPGVLFVLPDSYVDPE+KD
Sbjct: 126 TLAKIVGSEEEARKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPEFKD 185

Query: 185 YGAELFVNGEIVQRSPERQRR-VDPQPQRVQDRPKYSDRTRYVRRRENM 233
           YGAELFVNGE+V R PERQRR V+   QR  D+PKY DR R VRRRENM
Sbjct: 186 YGAELFVNGEVVPRPPERQRRMVELTNQRGSDKPKYHDRIRNVRRRENM 231

[Close]

BLAST of HG10012823 vs. ExPASy Swiss-Prot
Match: P82245 (50S ribosomal protein L28, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL28 PE=1 SV=2)

HSP 1 Score: 178.7 bits (452), Expect = 1.4e-43
Identity = 96/118 (81.36%), Postives = 105/118 (88.98%), Query Frame = 0


Query: 305 SQLGFLTSQLAGIKISSNHSL-ISPSPISTAPLRPPLQPVARRVCPFTGKKANKKNLVSF 364
           S+LGFLTSQL+GI+IS +    I   PIS APL+P LQPVARR+CPFTGKK+NK N VS 
Sbjct: 32  SELGFLTSQLSGIQISPSPLFPIISKPIS-APLKPSLQPVARRICPFTGKKSNKANRVSH 91

Query: 365 SNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE 422
           SNHKTK+LQFVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 92  SNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of HG10012823 vs. ExPASy Swiss-Prot
Match: P30956 (50S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL28 PE=1 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.8e-43
Identity = 94/150 (62.67%), Postives = 118/150 (78.67%), Query Frame = 0


Query: 272 TMAASVVLGFTPATSSGVMALSSTKLHFRTKANSQLGFLTSQLAGIKISSNHSLISPSPI 331
           TM A + L     +S    +++      ++K +S+L F+TSQL+G+KISS H + S +P+
Sbjct: 3   TMVAGISLRGPVMSSHRTFSVTKRASLPQSKLSSELSFVTSQLSGLKISSTHFISSSAPL 62

Query: 332 STAPLRPPLQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 391
           S  P +P LQPVARR+CPFTGKK+N+ N VS SNHKTKKLQFVNLQYK++WWEAGKR+VK
Sbjct: 63  S-VPFKPSLQPVARRICPFTGKKSNRANKVSHSNHKTKKLQFVNLQYKRIWWEAGKRYVK 122

Query: 392 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 422
           LRLSTKA+KTIEKNGLDAVAKKAGIDL K+
Sbjct: 123 LRLSTKAIKTIEKNGLDAVAKKAGIDLSKK 151

[Close]

BLAST of HG10012823 vs. ExPASy TrEMBL
Match: A0A6J1D8H1 (multiple organellar RNA editing factor 2, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111017993 PE=4 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 1.0e-118
Identity = 217/231 (93.94%), Postives = 224/231 (96.97%), Query Frame = 0


Query: 2   ASASTSTARLSLLHRRLFSSSTTLTHPPSPPSLTLCRRSLPPLSHAVRSIPSASRFTSIR 61
           ASASTSTARLSLL +RL SSSTTLT PPSPP+LTL RRSLPPLSHAVRSIPSASRFT IR
Sbjct: 12  ASASTSTARLSLLPKRLLSSSTTLTRPPSPPTLTLGRRSLPPLSHAVRSIPSASRFTPIR 71

Query: 62  CRVNRSGNSSYSPLNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDC 121
           CRVNRSGNS YSPLNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDC
Sbjct: 72  CRVNRSGNSGYSPLNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDC 131

Query: 122 YIQTLAKVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPE 181
           YIQTLAKVVGSEEEAKKKIYNVSCERYFGFGCE+DEETSNKLEG+PGVLFVLPDSYVDPE
Sbjct: 132 YIQTLAKVVGSEEEAKKKIYNVSCERYFGFGCEIDEETSNKLEGVPGVLFVLPDSYVDPE 191

Query: 182 YKDYGAELFVNGEIVQRSPERQRRVDPQPQRVQDRPKYSDRTRYVRRRENM 233
           YKDYGAELFVNGEIVQRSPERQRRV+PQPQR QDRP+Y+DRTRYVRRRENM
Sbjct: 192 YKDYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPRYNDRTRYVRRRENM 242

[Close]

BLAST of HG10012823 vs. ExPASy TrEMBL
Match: A0A6J1E8X5 (multiple organellar RNA editing factor 2, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111431937 PE=4 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 1.0e-118
Identity = 215/229 (93.89%), Postives = 223/229 (97.38%), Query Frame = 0


Query: 4   ASTSTARLSLLHRRLFSSSTTLTHPPSPPSLTLCRRSLPPLSHAVRSIPSASRFTSIRCR 63
           A  STARLSLLHRRLFSSSTTLTHPPSPPSLTLCRRSLPPLSHAVRS PSASR+TSIRCR
Sbjct: 8   AMGSTARLSLLHRRLFSSSTTLTHPPSPPSLTLCRRSLPPLSHAVRSNPSASRYTSIRCR 67

Query: 64  VNRSGNSSYSPLNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYI 123
           VNR+GNSSYSP NSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYI
Sbjct: 68  VNRTGNSSYSPQNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYI 127

Query: 124 QTLAKVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPEYK 183
           QTLAKV+GSEEEAKKKIYNVSCERYFGFGCE+DEETSNKLEGLPGVLFVLPDSYVDPE K
Sbjct: 128 QTLAKVLGSEEEAKKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPENK 187

Query: 184 DYGAELFVNGEIVQRSPERQRRVDPQPQRVQDRPKYSDRTRYVRRRENM 233
           DYGAELFVNGEIVQRSPERQRRV+PQPQR QDRP+Y+DRTR+VRRRENM
Sbjct: 188 DYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPRYNDRTRFVRRRENM 236

[Close]

BLAST of HG10012823 vs. ExPASy TrEMBL
Match: A0A6J1IT23 (multiple organellar RNA editing factor 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111479115 PE=4 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 7.3e-117
Identity = 212/229 (92.58%), Postives = 220/229 (96.07%), Query Frame = 0


Query: 4   ASTSTARLSLLHRRLFSSSTTLTHPPSPPSLTLCRRSLPPLSHAVRSIPSASRFTSIRCR 63
           A  STARLSLLHRRLFSSSTTLTHPPSPP LTLCRRSLPPLSH VRS PSASR+TSIRCR
Sbjct: 8   AMGSTARLSLLHRRLFSSSTTLTHPPSPPFLTLCRRSLPPLSHVVRSNPSASRYTSIRCR 67

Query: 64  VNRSGNSSYSPLNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYI 123
           VNR+GNSSYSP NSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYI
Sbjct: 68  VNRTGNSSYSPQNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYI 127

Query: 124 QTLAKVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPEYK 183
           QTLAKV+GSEEEA KKIYNVSCERYFGFGCE+DEETSNKLEGLPGVLFVLPDSYVDPE K
Sbjct: 128 QTLAKVLGSEEEAMKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPENK 187

Query: 184 DYGAELFVNGEIVQRSPERQRRVDPQPQRVQDRPKYSDRTRYVRRRENM 233
           DYGAELFVNGEIVQRSPERQRRV+PQPQR QDRP+Y+DRTR+VRRRENM
Sbjct: 188 DYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPRYNDRTRFVRRRENM 236

[Close]

BLAST of HG10012823 vs. ExPASy TrEMBL
Match: A0A5D3CZF4 (Multiple organellar RNA editing factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001860 PE=4 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 5.4e-112
Identity = 208/232 (89.66%), Postives = 216/232 (93.10%), Query Frame = 0


Query: 2   ASASTSTARLSLLHRRLFSSSTTLTHPPSPPSLTLCRRSLPPLSHAVRSIPSASRFTSIR 61
           AS STS ARLS+L RRLFSSS+TLTHPPSP S TL RRSLP LSHAVRSIPS+SR TS R
Sbjct: 12  ASVSTSAARLSVLPRRLFSSSSTLTHPPSPSSFTLRRRSLPLLSHAVRSIPSSSRSTSFR 71

Query: 62  CRVNRSGNSSYSPLNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDC 121
           C  +R GNSSYSPLNSNSNFS+RPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDC
Sbjct: 72  CLSSRPGNSSYSPLNSNSNFSERPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDC 131

Query: 122 YIQTLAKVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPE 181
           YIQTLAKVVGSEEEAKK+IYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPE
Sbjct: 132 YIQTLAKVVGSEEEAKKRIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPE 191

Query: 182 YKDYGAELFVNGEIVQRSPERQRRVDPQPQRVQDRPKYSDRTRYVRRRENMS 234
           YKDYGAEL VNGEIVQRSPERQRRV PQPQR  DRPKY+DRTRYVRRRENM+
Sbjct: 192 YKDYGAELLVNGEIVQRSPERQRRVQPQPQRANDRPKYTDRTRYVRRRENMT 243

[Close]

BLAST of HG10012823 vs. ExPASy TrEMBL
Match: A0A1S3AW51 (multiple organellar RNA editing factor 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483566 PE=4 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 5.4e-112
Identity = 208/232 (89.66%), Postives = 216/232 (93.10%), Query Frame = 0


Query: 2   ASASTSTARLSLLHRRLFSSSTTLTHPPSPPSLTLCRRSLPPLSHAVRSIPSASRFTSIR 61
           AS STS ARLS+L RRLFSSS+TLTHPPSP S TL RRSLP LSHAVRSIPS+SR TS R
Sbjct: 12  ASVSTSAARLSVLPRRLFSSSSTLTHPPSPSSFTLRRRSLPLLSHAVRSIPSSSRSTSFR 71

Query: 62  CRVNRSGNSSYSPLNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDC 121
           C  +R GNSSYSPLNSNSNFS+RPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDC
Sbjct: 72  CLSSRPGNSSYSPLNSNSNFSERPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDC 131

Query: 122 YIQTLAKVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPE 181
           YIQTLAKVVGSEEEAKK+IYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPE
Sbjct: 132 YIQTLAKVVGSEEEAKKRIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPE 191

Query: 182 YKDYGAELFVNGEIVQRSPERQRRVDPQPQRVQDRPKYSDRTRYVRRRENMS 234
           YKDYGAEL VNGEIVQRSPERQRRV PQPQR  DRPKY+DRTRYVRRRENM+
Sbjct: 192 YKDYGAELLVNGEIVQRSPERQRRVQPQPQRANDRPKYTDRTRYVRRRENMT 243

[Close]

BLAST of HG10012823 vs. TAIR 10
Match: AT2G33430.1 (differentiation and greening-like 1 )

HSP 1 Score: 331.6 bits (849), Expect = 8.9e-91
Identity = 168/215 (78.14%), Postives = 180/215 (83.72%), Query Frame = 0


Query: 17  RLFSSSTTLTHPPSPPSLTLCRRSLPPLSHAVRSIPSASRFTSIRCRVNRSGNSSYSPLN 76
           R   S+ TL  PP  PS          + +    +  ++RF SIRC  NRSG S+YSPLN
Sbjct: 13  RALLSNVTLMAPPRIPS---------SVHYGGSRLGCSTRFFSIRCGANRSG-STYSPLN 72

Query: 77  SNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVGSEEEA 136
           S SNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVGSEEEA
Sbjct: 73  SGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVGSEEEA 132

Query: 137 KKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPEYKDYGAELFVNGEIV 196
           KK+IYNVSCERY GFGCE+DEETS KLEGLPGVLFVLPDSYVDPE KDYGAELFVNGEIV
Sbjct: 133 KKRIYNVSCERYLGFGCEIDEETSTKLEGLPGVLFVLPDSYVDPENKDYGAELFVNGEIV 192

Query: 197 QRSPERQRRVDPQPQRVQDRPKYSDRTRYVRRREN 232
           QRSPERQRRV+PQPQR QDRP+Y+DRTRY RRREN
Sbjct: 193 QRSPERQRRVEPQPQRAQDRPRYNDRTRYSRRREN 217

[Close]

BLAST of HG10012823 vs. TAIR 10
Match: AT1G32580.1 (plastid developmental protein DAG, putative )

HSP 1 Score: 325.9 bits (834), Expect = 4.9e-89
Identity = 169/222 (76.13%), Postives = 186/222 (83.78%), Query Frame = 0


Query: 12  SLLHRRLFSSSTTLTHPPSPPSLTLCRRSLPPLSHAVRSIPSASRFTSIRCRVNRSGNSS 71
           S + +RL S+S   T  PS PS  L RRS P  SHAV  I S +RFT+IR R++RSG  S
Sbjct: 11  SRITKRLISTSGATT--PS-PSYILSRRSTPVFSHAVGFISSLNRFTTIRTRMDRSG-GS 70

Query: 72  YSPLNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVG 131
           YSPL S SNFSDR PTEMAPLFPGCDYEHWLIVMDKPGGE ATKQQMIDCY+QTLAK++G
Sbjct: 71  YSPLKSGSNFSDRAPTEMAPLFPGCDYEHWLIVMDKPGGENATKQQMIDCYVQTLAKIIG 130

Query: 132 SEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPEYKDYGAELFV 191
           SEEEAKKKIYNVSCERYFGFGCE+DEETSNKLEGLPGVLF+LPDSYVD E KDYGAELFV
Sbjct: 131 SEEEAKKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFILPDSYVDQENKDYGAELFV 190

Query: 192 NGEIVQRSPERQRR-VDPQPQRVQDRPKYSDRTRYVRRRENM 233
           NGEIVQR PERQR+ ++   QR  D+PKY D+TRYVRRRENM
Sbjct: 191 NGEIVQRPPERQRKIIELTTQRTNDKPKYHDKTRYVRRRENM 228

[Close]

BLAST of HG10012823 vs. TAIR 10
Match: AT2G35240.1 (plastid developmental protein DAG, putative )

HSP 1 Score: 324.3 bits (830), Expect = 1.4e-88
Identity = 168/229 (73.36%), Postives = 188/229 (82.10%), Query Frame = 0


Query: 5   STSTARLSLLHRRLFSSSTTLTHPPSPPSLTLCRRSLPPLSHAVRSIPSASRFTSIRCRV 64
           S STA  S + +R FS+S  +  P   PS  + RR  P + HAV  IP+ +RFT+IR R+
Sbjct: 6   SRSTA--SCVAKRFFSTSNAVASPSPLPSHLISRRFSPTIFHAVGYIPALTRFTTIRTRM 65

Query: 65  NRSGNSSYSPLNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQ 124
           +RSG  SYSPL S SNFSDRPPTEMAPLFPGCDYEHWLIVM+KPGGE A KQQMIDCY+Q
Sbjct: 66  DRSG-GSYSPLKSGSNFSDRPPTEMAPLFPGCDYEHWLIVMEKPGGENAQKQQMIDCYVQ 125

Query: 125 TLAKVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPEYKD 184
           TLAK+VGSEEEA+KKIYNVSCERYFGFGCE+DEETSNKLEGLPGVLFVLPDSYVDPE+KD
Sbjct: 126 TLAKIVGSEEEARKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPEFKD 185

Query: 185 YGAELFVNGEIVQRSPERQRR-VDPQPQRVQDRPKYSDRTRYVRRRENM 233
           YGAELFVNGE+V R PERQRR V+   QR  D+PKY DR R VRRRENM
Sbjct: 186 YGAELFVNGEVVPRPPERQRRMVELTNQRGSDKPKYHDRIRNVRRRENM 231

[Close]

BLAST of HG10012823 vs. TAIR 10
Match: AT2G33450.1 (Ribosomal L28 family )

HSP 1 Score: 166.4 bits (420), Expect = 5.0e-41
Identity = 93/136 (68.38%), Postives = 108/136 (79.41%), Query Frame = 0


Query: 290 MALSSTKLHFRTKANSQLGFLTSQLAGIKISSNHSLISPSPI---STAPLRPPLQP-VAR 349
           M  S+  +   T  + +LGFLTSQL+G++IS      +PS +    + P  P +QP VAR
Sbjct: 13  MTSSAKSMTKSTVTSKELGFLTSQLSGLRIS-----YTPSDVINRISLPSFPGIQPIVAR 72

Query: 350 RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKN 409
           R+CPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKN
Sbjct: 73  RICPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKN 132

Query: 410 GLDAVAKKAGIDLRKE 422
           GLDAVAKKAGIDLRK+
Sbjct: 133 GLDAVAKKAGIDLRKK 143

[Close]

BLAST of HG10012823 vs. TAIR 10
Match: AT3G06790.2 (plastid developmental protein DAG, putative )

HSP 1 Score: 152.1 bits (383), Expect = 9.7e-37
Identity = 109/246 (44.31%), Postives = 145/246 (58.94%), Query Frame = 0


Query: 1   MASASTSTARLSLLHRRLFSSSTTLTHPPSPPSLTLCRRSLPPLSHAVRSIPSASRFTSI 60
           MA  ST     +LL++ L SS+   ++  S P+L+   R   PL   V S  ++     I
Sbjct: 1   MALISTRRTLSTLLNKTLSSST---SYSSSFPTLSSRSRFAMPLIEKVSSSRTSLGPCYI 60

Query: 61  RCRVNRSGNSSYSPLNSNS-NFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMI 120
             R   SG S YSPLN  S N+S+RPP E   L  GCDYEHWLIVM+    +  T+++MI
Sbjct: 61  STRPKTSG-SGYSPLNDPSPNWSNRPPKETI-LLDGCDYEHWLIVMEFTDPK-PTEEEMI 120

Query: 121 DCYIQTLAKVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVD 180
           + Y++TL  V+G EEEAKKKIY+V    Y GFG  + EE S K++ LPGVL+VLPDSY+D
Sbjct: 121 NSYVKTLTSVLGCEEEAKKKIYSVCTSTYTGFGALISEELSCKVKALPGVLWVLPDSYLD 180

Query: 181 PEYKDYGAELFVNGEIVQRSPER---QRRVDPQPQRVQDRPKYSDR--TRYVRRRE-NMS 240
              KDYG +L+V G+++ R   R   QR   P+P     RP+Y  R  T  V RRE +M 
Sbjct: 181 VPNKDYGGDLYVEGKVIPRPQYRFTEQRHTRPRP-----RPRYDRRRETMQVERREPSMG 235

The following BLAST results are available for this feature:

BLAST of HG10012823 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896418.1	1.9e-119	95.63	multiple organellar RNA editing factor 2, chloroplastic-like [Benincasa hispida]	[more]
XP_022924432.1	2.1e-118	93.89	multiple organellar RNA editing factor 2, chloroplastic-like isoform X1 [Cucurbi...	[more]
XP_022149612.1	2.1e-118	93.94	multiple organellar RNA editing factor 2, chloroplastic-like [Momordica charanti...	[more]
KAG7018807.1	2.1e-118	93.89	Multiple organellar RNA editing factor 2, chloroplastic, partial [Cucurbita argy...	[more]
XP_022979370.1	1.5e-116	92.58	multiple organellar RNA editing factor 2, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of HG10012823 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22793	1.3e-89	78.14	Multiple organellar RNA editing factor 2, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q9C7Y2	6.9e-88	76.13	Multiple organellar RNA editing factor 5, chloroplastic/mitochondrial OS=Arabido...	[more]
O82169	2.0e-87	73.36	Multiple organellar RNA editing factor 6, mitochondrial OS=Arabidopsis thaliana ...	[more]
P82245	1.4e-43	81.36	50S ribosomal protein L28, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL28 P...	[more]
P30956	1.8e-43	62.67	50S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL28 P...	[more]

BLAST of HG10012823 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D8H1	1.0e-118	93.94	multiple organellar RNA editing factor 2, chloroplastic-like OS=Momordica charan...	[more]
A0A6J1E8X5	1.0e-118	93.89	multiple organellar RNA editing factor 2, chloroplastic-like isoform X1 OS=Cucur...	[more]
A0A6J1IT23	7.3e-117	92.58	multiple organellar RNA editing factor 2, chloroplastic-like OS=Cucurbita maxima...	[more]
A0A5D3CZF4	5.4e-112	89.66	Multiple organellar RNA editing factor 2 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3AW51	5.4e-112	89.66	multiple organellar RNA editing factor 2, chloroplastic OS=Cucumis melo OX=3656 ...	[more]

BLAST of HG10012823 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33430.1	8.9e-91	78.14	differentiation and greening-like 1	[more]
AT1G32580.1	4.9e-89	76.13	plastid developmental protein DAG, putative	[more]
AT2G35240.1	1.4e-88	73.36	plastid developmental protein DAG, putative	[more]
AT2G33450.1	5.0e-41	68.38	Ribosomal L28 family	[more]
AT3G06790.2	9.7e-37	44.31	plastid developmental protein DAG, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001383	Ribosomal protein L28	TIGRFAM	TIGR00009	TIGR00009	coord: 346..401 e-value: 1.6E-15 score: 55.3
IPR001383	Ribosomal protein L28	HAMAP	MF_00373	Ribosomal_L28	coord: 343..419 score: 13.90849
IPR026569	Ribosomal protein L28/L24	PFAM	PF00830	Ribosomal_L28	coord: 346..404 e-value: 7.6E-18 score: 64.4
IPR037147	Ribosomal protein L28/L24 superfamily	GENE3D	2.30.170.40	Ribosomal protein L28/L24	coord: 345..421 e-value: 1.4E-27 score: 97.4
IPR037045	Peptidase S8 propeptide/proteinase inhibitor I9 superfamily	GENE3D	3.30.70.80	Peptidase S8 propeptide/proteinase inhibitor I9	coord: 96..179 e-value: 2.2E-6 score: 30.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 199..229
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 199..265
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 232..258
None	No IPR available	PANTHER	PTHR31346:SF15	MULTIPLE ORGANELLAR RNA EDITING FACTOR 2 CHLOROPLASTIC	coord: 2..232
IPR039206	MORF/ORRM1/DAG-like	PANTHER	PTHR31346	MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED	coord: 2..232
IPR034704	L28p-like	SUPERFAMILY	143800	L28p-like	coord: 346..418

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10012823.1	HG10012823.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016554	cytidine to uridine editing
biological_process	GO:0080156	mitochondrial mRNA modification
biological_process	GO:0006397	mRNA processing
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome