HG10012651 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10012651
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	SWIM-type domain-containing protein
Location	Chr01: 23123016 .. 23123198 (+)
RNA-Seq Expression	HG10012651
Synteny	HG10012651

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGTCTTACGTGCCGACCCATCGTTGTTGAGGAAACCTGGTAGACCAAAGAGCTCGCGATACCACAATGAAATGGACTGGTCAGAATCGAGTACTCAACTACGGTGTGGATTTTGCAATCAGTTAGGTCATAATCATAGGAAGTGTCCTTCATTACAAAGACAGGCACCCGACAATTAA

mRNA sequence

ATGTCTGTCTTACGTGCCGACCCATCGTTGTTGAGGAAACCTGGTAGACCAAAGAGCTCGCGATACCACAATGAAATGGACTGGTCAGAATCGAGTACTCAACTACGGTGTGGATTTTGCAATCAGTTAGGTCATAATCATAGGAAGTGTCCTTCATTACAAAGACAGGCACCCGACAATTAA

Coding sequence (CDS)

ATGTCTGTCTTACGTGCCGACCCATCGTTGTTGAGGAAACCTGGTAGACCAAAGAGCTCGCGATACCACAATGAAATGGACTGGTCAGAATCGAGTACTCAACTACGGTGTGGATTTTGCAATCAGTTAGGTCATAATCATAGGAAGTGTCCTTCATTACAAAGACAGGCACCCGACAATTAA

Protein sequence

MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN

Homology

[Close]

BLAST of HG10012651 vs. NCBI nr
Match: KAA0066695.1 (uncharacterized protein E6C27_scaffold271G00280 [Cucumis melo var. makuwa] >TYK27845.1 uncharacterized protein E5676_scaffold384G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 2.7e-19
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 1  MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN 60
          M VL  DPSLLRKP RPKSSRYHNEMDW E S+Q++CGFC Q GHN RKCP LQR+APDN
Sbjct: 38 MPVLHPDPSLLRKPNRPKSSRYHNEMDWREPSSQVQCGFCGQRGHNRRKCPLLQRRAPDN 97

[Close]

BLAST of HG10012651 vs. NCBI nr
Match: KAA0036768.1 (uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 7.4e-17
Identity = 43/60 (71.67%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 1   MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN 60
           M VL  DPSLLRK GRPK+SRYHNEMDW+E S Q RC FC+QLGHN R C  L+RQAPD+
Sbjct: 581 MPVLLPDPSLLRKSGRPKTSRYHNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS 640

[Close]

BLAST of HG10012651 vs. NCBI nr
Match: TYJ98405.1 (uncharacterized protein E5676_scaffold4012G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 7.4e-17
Identity = 43/60 (71.67%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 1  MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN 60
          M VL  DPSLLRK GRPK+SRYHNEMDW+E S Q RC FC+QLGHN R C  L+RQAPD+
Sbjct: 39 MPVLLPDPSLLRKSGRPKTSRYHNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS 98

[Close]

BLAST of HG10012651 vs. NCBI nr
Match: KAA0039601.1 (uncharacterized protein E6C27_scaffold744G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 8.2e-16
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 1   MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN 60
           M VL +DPSLLRK GR KSSRYHNEMDW+E S Q RC FC+QLGHN  +C  L+RQAPD+
Sbjct: 456 MPVLLSDPSLLRKSGRSKSSRYHNEMDWTEQSAQQRCSFCSQLGHNRWRCTLLRRQAPDS 515

[Close]

BLAST of HG10012651 vs. NCBI nr
Match: TYK01705.1 (uncharacterized protein E5676_scaffold775G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 8.2e-16
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 1   MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN 60
           M VL +DPSLLRK GR KSSRYHNEMDW+E S Q RC FC+QLGHN  +C  L+RQAPD+
Sbjct: 368 MPVLLSDPSLLRKSGRSKSSRYHNEMDWTEQSAQQRCSFCSQLGHNRWRCTLLRRQAPDS 427

[Close]

BLAST of HG10012651 vs. ExPASy TrEMBL
Match: A0A5D3DWZ7 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00220 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-19
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 1  MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN 60
          M VL  DPSLLRKP RPKSSRYHNEMDW E S+Q++CGFC Q GHN RKCP LQR+APDN
Sbjct: 38 MPVLHPDPSLLRKPNRPKSSRYHNEMDWREPSSQVQCGFCGQRGHNRRKCPLLQRRAPDN 97

[Close]

BLAST of HG10012651 vs. ExPASy TrEMBL
Match: A0A5A7T1X8 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G00510 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.6e-17
Identity = 43/60 (71.67%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 1   MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN 60
           M VL  DPSLLRK GRPK+SRYHNEMDW+E S Q RC FC+QLGHN R C  L+RQAPD+
Sbjct: 581 MPVLLPDPSLLRKSGRPKTSRYHNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS 640

[Close]

BLAST of HG10012651 vs. ExPASy TrEMBL
Match: A0A5D3BJ66 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4012G00010 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.6e-17
Identity = 43/60 (71.67%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 1  MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN 60
          M VL  DPSLLRK GRPK+SRYHNEMDW+E S Q RC FC+QLGHN R C  L+RQAPD+
Sbjct: 39 MPVLLPDPSLLRKSGRPKTSRYHNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS 98

[Close]

BLAST of HG10012651 vs. ExPASy TrEMBL
Match: A0A5D3BR89 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00280 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.0e-16
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 1   MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN 60
           M VL +DPSLLRK GR KSSRYHNEMDW+E S Q RC FC+QLGHN  +C  L+RQAPD+
Sbjct: 368 MPVLLSDPSLLRKSGRSKSSRYHNEMDWTEQSAQQRCSFCSQLGHNRWRCTLLRRQAPDS 427

[Close]

BLAST of HG10012651 vs. ExPASy TrEMBL
Match: A0A5A7TD93 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G00780 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.0e-16
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 1   MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN 60
           M VL +DPSLLRK GR KSSRYHNEMDW+E S Q RC FC+QLGHN  +C  L+RQAPD+
Sbjct: 456 MPVLLSDPSLLRKSGRSKSSRYHNEMDWTEQSAQQRCSFCSQLGHNRWRCTLLRRQAPDS 515

The following BLAST results are available for this feature:

BLAST of HG10012651 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066695.1	2.7e-19	76.67	uncharacterized protein E6C27_scaffold271G00280 [Cucumis melo var. makuwa] >TYK2...	[more]
KAA0036768.1	7.4e-17	71.67	uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa]	[more]
TYJ98405.1	7.4e-17	71.67	uncharacterized protein E5676_scaffold4012G00010 [Cucumis melo var. makuwa]	[more]
KAA0039601.1	8.2e-16	70.00	uncharacterized protein E6C27_scaffold744G00780 [Cucumis melo var. makuwa]	[more]
TYK01705.1	8.2e-16	70.00	uncharacterized protein E5676_scaffold775G00280 [Cucumis melo var. makuwa]	[more]

BLAST of HG10012651 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10012651 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DWZ7	1.3e-19	76.67	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7T1X8	3.6e-17	71.67	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5D3BJ66	3.6e-17	71.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BR89	4.0e-16	70.00	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7TD93	4.0e-16	70.00	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]

BLAST of HG10012651 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..25
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 22..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10012651.1	HG10012651.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding