HG10012560 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10012560
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr01: 22366037 .. 22366510 (-)
RNA-Seq ExpressionHG10012560
SyntenyHG10012560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGCTTTGGCTATGGTTAGCTTCAAGTTGATAATCAAAATCATGAGCCCGGAGATAGTTTGCCATTGCCAGCATGAAGTCCAGAACGAACCAACCGTTAATGAGATCGAAGTTAAACCTCACGAGGCGGAGAGATATGGCATCCCGGAAAGCCTGAAAGCCATGAATGAAGACTTGCAACTTGGCTTCAGAGCACCTAAAAGCTCTTTGTTCTTGACTTGCCAAGGGAATTACATAAGAACAAGCATAACCATAGTGGCCTGCTGCGTCATGGTTTTCGGTATCGAAAAGTGCTCTTGCTTTGGACACTTTAGATGTGTTAAGAAAAGGTCACAGACTCAAAGATTCTACACAATTTTGAAATCGACAGCAAAAGGTAAGTACTGAATTGTTAAAGATTTTCAGCATCCACATCCAGCCGTTCTCTTTCTACCTGGTAAGGTTGTAATGTTATCTGCATACTTCACTTAG

mRNA sequence

ATGGTAGCTTTGGCTATGGTTAGCTTCAAGTTGATAATCAAAATCATGAGCCCGGAGATAGTTTGCCATTGCCAGCATGAAGTCCAGAACGAACCAACCGTTAATGAGATCGAAGTTAAACCTCACGAGGCGGAGAGATATGGCATCCCGGAAAGCCTGAAAGCCATGAATGAAGACTTGCAACTTGGCTTCAGAGCACCTAAAAGCTCTTTGTTCTTGACTTGCCAAGGGAATTACATAAGAACAAGCATAACCATAGTGGCCTGCTGCGTCATGGTTTTCGGTATCGAAAAGTGCTCTTGCTTTGGACACTTTAGATGTGTTAAGAAAAGGTCACAGACTCAAAGATTCTACACAATTTTGAAATCGACAGCAAAAGATTTTCAGCATCCACATCCAGCCGTTCTCTTTCTACCTGGTAAGGTTGTAATGTTATCTGCATACTTCACTTAG

Coding sequence (CDS)

ATGGTAGCTTTGGCTATGGTTAGCTTCAAGTTGATAATCAAAATCATGAGCCCGGAGATAGTTTGCCATTGCCAGCATGAAGTCCAGAACGAACCAACCGTTAATGAGATCGAAGTTAAACCTCACGAGGCGGAGAGATATGGCATCCCGGAAAGCCTGAAAGCCATGAATGAAGACTTGCAACTTGGCTTCAGAGCACCTAAAAGCTCTTTGTTCTTGACTTGCCAAGGGAATTACATAAGAACAAGCATAACCATAGTGGCCTGCTGCGTCATGGTTTTCGGTATCGAAAAGTGCTCTTGCTTTGGACACTTTAGATGTGTTAAGAAAAGGTCACAGACTCAAAGATTCTACACAATTTTGAAATCGACAGCAAAAGATTTTCAGCATCCACATCCAGCCGTTCTCTTTCTACCTGGTAAGGTTGTAATGTTATCTGCATACTTCACTTAG

Protein sequence

MVALAMVSFKLIIKIMSPEIVCHCQHEVQNEPTVNEIEVKPHEAERYGIPESLKAMNEDLQLGFRAPKSSLFLTCQGNYIRTSITIVACCVMVFGIEKCSCFGHFRCVKKRSQTQRFYTILKSTAKDFQHPHPAVLFLPGKVVMLSAYFT
Homology
[Close]
BLAST of HG10012560 vs. NCBI nr
Match: KGN57111.1 (hypothetical protein Csa_010294 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 4.6e-07
Identity = 44/94 (46.81%), Postives = 57/94 (60.64%), Query Frame = 0 

Query: 51  ESLKAMNEDLQLGFRAPKSSLFLTCQGNYIRTSITIVACCVMVFGIEKCSCFGHFRCVKK 110
           +++KAM+EDLQLGFRAPK  LFLTCQ NYIRTS T +AC V V           +R +  
Sbjct: 5   KAMKAMSEDLQLGFRAPK-VLFLTCQENYIRTSTTKLACLVTVI---------QYRALDL 64

Query: 111 RSQTQRFYTILKSTAKDFQH-PHPAVLFLPGKVV 144
               ++   ++ ST   FQ+ P  AVL  PGKV+
Sbjct: 65  LDVLRKGDRLIDST--QFQNRPEKAVLVQPGKVM 86

[Close]
BLAST of HG10012560 vs. ExPASy TrEMBL
Match: A0A0A0LAL2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G154340 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-07
Identity = 44/94 (46.81%), Postives = 57/94 (60.64%), Query Frame = 0 

Query: 51  ESLKAMNEDLQLGFRAPKSSLFLTCQGNYIRTSITIVACCVMVFGIEKCSCFGHFRCVKK 110
           +++KAM+EDLQLGFRAPK  LFLTCQ NYIRTS T +AC V V           +R +  
Sbjct: 5   KAMKAMSEDLQLGFRAPK-VLFLTCQENYIRTSTTKLACLVTVI---------QYRALDL 64

Query: 111 RSQTQRFYTILKSTAKDFQH-PHPAVLFLPGKVV 144
               ++   ++ ST   FQ+ P  AVL  PGKV+
Sbjct: 65  LDVLRKGDRLIDST--QFQNRPEKAVLVQPGKVM 86

The following BLAST results are available for this feature:
BLAST of HG10012560 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57111.14.6e-0746.81hypothetical protein Csa_010294 [Cucumis sativus][more]
BLAST of HG10012560 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10012560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAL22.2e-0746.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G154340 PE=4 SV=1[more]
BLAST of HG10012560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10012560.1HG10012560.1mRNA