HG10012495 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10012495
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr01: 21801292 .. 21801612 (-)
RNA-Seq ExpressionHG10012495
SyntenyHG10012495
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGACCTTCGAGATATTAATCTTAAGGTCATGCACTGTGATGTTGCTTTTAAGTTGAATGAGCATATTCTTGGTATTGGTGGCGTTATTGGATCATCTTCTGGGCAGCTTATTGCTTCTCTTTGTGAGTTTCGTGCTTTTTCTGGTAATGTGCTCGGTGTCGAGGCTTTTGTGGTTGTGGAGGGTTTGCATTTGGCTGATCATATGGGTCTTTCTCATTTATTGTTGTTGTCTAATTCACTTGAGTTGATCCAAATTCTTAATGGTTTCACAGTCGCTCCGGCTGAAGTGGTCAATTGTGTTGCTGATATTTTATAA

mRNA sequence

ATGTATGACCTTCGAGATATTAATCTTAAGGTCATGCACTGTGATGTTGCTTTTAAGTTGAATGAGCATATTCTTGGTATTGGTGGCGTTATTGGATCATCTTCTGGGCAGCTTATTGCTTCTCTTTGTGAGTTTCGTGCTTTTTCTGGTAATGTGCTCGGTGTCGAGGCTTTTGTGGTTGTGGAGGGTTTGCATTTGGCTGATCATATGGGTCTTTCTCATTTATTGTTGTTGTCTAATTCACTTGAGTTGATCCAAATTCTTAATGGTTTCACAGTCGCTCCGGCTGAAGTGGTCAATTGTGTTGCTGATATTTTATAA

Coding sequence (CDS)

ATGTATGACCTTCGAGATATTAATCTTAAGGTCATGCACTGTGATGTTGCTTTTAAGTTGAATGAGCATATTCTTGGTATTGGTGGCGTTATTGGATCATCTTCTGGGCAGCTTATTGCTTCTCTTTGTGAGTTTCGTGCTTTTTCTGGTAATGTGCTCGGTGTCGAGGCTTTTGTGGTTGTGGAGGGTTTGCATTTGGCTGATCATATGGGTCTTTCTCATTTATTGTTGTTGTCTAATTCACTTGAGTTGATCCAAATTCTTAATGGTTTCACAGTCGCTCCGGCTGAAGTGGTCAATTGTGTTGCTGATATTTTATAA

Protein sequence

MYDLRDINLKVMHCDVAFKLNEHILGIGGVIGSSSGQLIASLCEFRAFSGNVLGVEAFVVVEGLHLADHMGLSHLLLLSNSLELIQILNGFTVAPAEVVNCVADIL
Homology
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BLAST of HG10012495 vs. NCBI nr
Match: XP_037439691.1 (uncharacterized protein LOC119307722 isoform X1 [Triticum dicoccoides])

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-04
Identity = 27/77 (35.06%), Postives = 50/77 (64.94%), Query Frame = 0 

Query: 12  MHCDVAFKLNEHILGIGGVIGSSSGQLIASLCEFRAFSGNVLGVEAFVVVEGLHLADHMG 71
           ++ D ++ ++E     G V+  SSG  IA+ C FR ++ +V  +EA  ++EGL LA+H+G
Sbjct: 310 LNVDASYHVDEGAGATGAVLRDSSGAFIAASCSFRQYAMDVPSMEALALLEGLRLAEHLG 369

Query: 72  LSHLLLLSNSLELIQIL 89
           +  L++ S+S E++Q +
Sbjct: 370 IYALVVESDSQEIVQAM 386

The following BLAST results are available for this feature:
BLAST of HG10012495 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_037439691.11.5e-0435.06uncharacterized protein LOC119307722 isoform X1 [Triticum dicoccoides][more]
BLAST of HG10012495 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10012495 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10012495 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 14..105
e-value: 1.2E-6
score: 28.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10012495.1HG10012495.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity