HG10012472 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10012472
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	TPR_REGION domain-containing protein
Location	Chr01: 21512493 .. 21514104 (+)
RNA-Seq Expression	HG10012472
Synteny	HG10012472

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCACAACGTAAAACCAAGAGCATTGATGCACTTAGAAAATGTGATCATGATCCTCACCTTATTGCTGCTGTGGCCAAGTTGTTTTGGCATTACAGGAAGGTTAACATAGCTAGAACTTGGCTGAAAAGGCCAGTAACACTTGCTCCAGGTGTTGGTGGTTTTTGGGTTTTATACTACAAATTTGAACTTCAGCAGGTTACTTACGAGAATCAGAAGAGCGTACTGAAATGATGTGTTGATGCAGAACCCATGACGAACAATTTCAAAGGCTGTGGAGAACTTCCATCAACAGACTGAAGCAATCTTGAAAAAAGTAGTTGCGCTAGGTAAGGAGGACGAGGAGGGCACTGTTGAAAATAGCAAAAATTAGTTTCTACATAGTTCAGATTTTTTAGCCTCTCGCGTATGAAGGCATGTACGATTTGTAAGAAGAGTCTGAGTTATGTTGTCGAACTATTTAATCAATGACTGAAATTTATGTCTTGTGAAAGATTGTTGTTTGGATTCCTTGAACACTTGGTTAACCTTTCATAGCGATTGTTGTCGGAACTTCTTTTAATTATTTCACTGGTTCAGTTAGAGGCTATATTTAGTTGTATTTGCATTATTTTGTTTATTCATTGTATTTTGAGCATTAGTCTCTTTTCATTTGATTAATGAAAAGTCTTGTTTCTTTTTTTTTTTTTATAAAAAAGAAGTTAGATTTCCACTATGCTTCTCAGCCTCTTTATTTATCGTTGTCCTAATTGTTGCTGGTATATTCTAATGTACCAAGGCGGAAGGTATGCGAAGGATCACATCTTTATTTACCCACCATGATTCTTATTGCATTTTTGTTAACTTTTCTACTAGAATCATGTGATTGAGTTTGGACATGCTTACCTTGATTCTATGGCACCATAGATTAACTGTGGGTACGAAAAGTACTTTTAAGTTCTTAACTAAATACATTACTTTTAATTTTTTACATTACTAGGCTTGGCCTTTAAAATTCTTCTTATTTTCATTCCTGTCAGCTGAAATAATGTTCTTGTTATTATTGGTTAGAAAAACTTAGGAGCATGATTGAGGATTAGAAACCCACACCACCGTTGGGCTTGGTACATTAGTTTCTATCAGAGTCAGATGTTACTTTGAAAAACAAGCAAAGGAAGGAAGGAACAAAGAGTTCAACCTTCTAGTTTGCACTTGGAGGGAAACAAAGTTACAACAATAAGAAGTATCTCAGGATATTGTCAGGGACCCCACTTGTATGCATTTTCATTCAGTAGAGAGATGACATTGTTCTCTTTTAATTTACAAGAAATTGTCTTATTTGGTATTCAATTGTTATCATTGCTGACTATTCATTTTGATTGATTCTACTTTGTGGTTGATCTTCGTATTTGTACTTTCAGGAAAGTTCCAAGTGAATATTTAAATTCCTTGTCAATGAAGAAATTAATTAGATGCAATATTATGATCTTATATTTATCATGCGCAGGTAGAGGAAATTTATAATCTCTCTCAAGATGATCTGTTGACAGAGGAGATCTTGATACTTGACACTCAAGGTGAAGTGTTTATTTGGATTGGTCAATCTGTTGACCCCAAAGAAAAGCAAAATGCTTGA

mRNA sequence

GCACAACGTAAAACCAAGAGCATTGATGCACTTAGAAAATGTGATCATGATCCTCACCTTATTGCTGCTGTGGCCAAGTTGTTTTGGCATTACAGGAAGGTTAACATAGCTAGAACTTGGCTGAAAAGGCCAGTAACACTTGCTCCAGGTGTTGGTGGTTTTTGGGTTTTATACTACAAATTTGAACTTCAGCAGGTAGAGGAAATTTATAATCTCTCTCAAGATGATCTGTTGACAGAGGAGATCTTGATACTTGACACTCAAGGTGAAGTGTTTATTTGGATTGGTCAATCTGTTGACCCCAAAGAAAAGCAAAATGCTTGA

Coding sequence (CDS)

GCACAACGTAAAACCAAGAGCATTGATGCACTTAGAAAATGTGATCATGATCCTCACCTTATTGCTGCTGTGGCCAAGTTGTTTTGGCATTACAGGAAGGTTAACATAGCTAGAACTTGGCTGAAAAGGCCAGTAACACTTGCTCCAGGTGTTGGTGGTTTTTGGGTTTTATACTACAAATTTGAACTTCAGCAGGTAGAGGAAATTTATAATCTCTCTCAAGATGATCTGTTGACAGAGGAGATCTTGATACTTGACACTCAAGGTGAAGTGTTTATTTGGATTGGTCAATCTGTTGACCCCAAAGAAAAGCAAAATGCTTGA

Protein sequence

AQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVDPKEKQNA

Homology

[Close]

BLAST of HG10012472 vs. NCBI nr
Match: KAG8498303.1 (hypothetical protein CXB51_007067 [Gossypium anomalum])

HSP 1 Score: 119.4 bits (298), Expect = 1.9e-23
Identity = 58/99 (58.59%), Postives = 72/99 (72.73%), Query Frame = 0


Query: 2    QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKF 61
            QRKTKS+DAL+KCDHDPH+IAAVAKLFWH RKV+ ARTWL R VTLAP +G FW LYYKF
Sbjct: 910  QRKTKSMDALKKCDHDPHVIAAVAKLFWHDRKVDKARTWLNRAVTLAPDIGDFWALYYKF 969

Query: 62   ELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVD 101
            ELQ   E    +Q D++   +      GE++  I ++V+
Sbjct: 970  ELQHGSE---ENQKDVMKRCVAAEPKHGEIWQVISKAVE 1005

[Close]

BLAST of HG10012472 vs. NCBI nr
Match: XP_002517947.1 (protein STABILIZED1 [Ricinus communis] >EEF44465.1 pre-mRNA splicing factor, putative [Ricinus communis])

HSP 1 Score: 119.4 bits (298), Expect = 1.9e-23
Identity = 61/104 (58.65%), Postives = 73/104 (70.19%), Query Frame = 0


Query: 2    QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKF 61
            QRKTKS+DAL+KCDHDPH+IAAVAKLFWH RKV+ ARTWL R VTLAP +G FW LYYKF
Sbjct: 907  QRKTKSMDALKKCDHDPHVIAAVAKLFWHDRKVDKARTWLNRAVTLAPDIGDFWALYYKF 966

Query: 62   ELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVDPKEKQ 106
            ELQ   E    +Q D+L   I      GE +  I ++V+   +Q
Sbjct: 967  ELQHGTE---ENQRDVLKRCIAAEPKHGEKWQAISKAVENAHQQ 1007

[Close]

BLAST of HG10012472 vs. NCBI nr
Match: XP_023532967.1 (protein STABILIZED1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 119.4 bits (298), Expect = 1.9e-23
Identity = 60/99 (60.61%), Postives = 72/99 (72.73%), Query Frame = 0


Query: 2   QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKF 61
           QRKTKS+DAL+KCDHDPH+IAAVAKLFWH RKV+ ARTWL R VTLAP +G FWVLYYKF
Sbjct: 899 QRKTKSMDALKKCDHDPHVIAAVAKLFWHDRKVDKARTWLNRAVTLAPDIGDFWVLYYKF 958

Query: 62  ELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVD 101
           ELQ   +    +Q D+L   I      GE +  I ++V+
Sbjct: 959 ELQHGTD---ENQKDVLKRCIAAEPKHGEKWQMISKAVE 994

[Close]

BLAST of HG10012472 vs. NCBI nr
Match: XP_022947634.1 (protein STABILIZED1 [Cucurbita moschata] >KAG6604802.1 Protein STABILIZED1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034922.1 Protein STABILIZED1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.4 bits (298), Expect = 1.9e-23
Identity = 60/99 (60.61%), Postives = 72/99 (72.73%), Query Frame = 0


Query: 2   QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKF 61
           QRKTKS+DAL+KCDHDPH+IAAVAKLFWH RKV+ ARTWL R VTLAP +G FWVLYYKF
Sbjct: 899 QRKTKSMDALKKCDHDPHVIAAVAKLFWHDRKVDKARTWLNRAVTLAPDIGDFWVLYYKF 958

Query: 62  ELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVD 101
           ELQ   +    +Q D+L   I      GE +  I ++V+
Sbjct: 959 ELQHGTD---ENQKDVLKRCIAAEPKHGEKWQMISKAVE 994

[Close]

BLAST of HG10012472 vs. NCBI nr
Match: XP_038907061.1 (protein STABILIZED1 [Benincasa hispida])

HSP 1 Score: 119.4 bits (298), Expect = 1.9e-23
Identity = 62/100 (62.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 2   QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKF 61
           QRKTKS+DAL+KCDHDPH+IAAVAKLFWH RKV+ ARTWL R VTLAP VG FW LYYKF
Sbjct: 899 QRKTKSMDALKKCDHDPHVIAAVAKLFWHDRKVDKARTWLNRAVTLAPDVGDFWALYYKF 958

Query: 62  ELQQ-VEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVD 101
           ELQ  V+E    +Q D+L   I      GE +  I ++V+
Sbjct: 959 ELQHGVDE----NQKDVLKRCIAAEPKHGEKWQTISKAVE 994

[Close]

BLAST of HG10012472 vs. ExPASy Swiss-Prot
Match: Q9ZT71 (Protein STABILIZED1 OS=Arabidopsis thaliana OX=3702 GN=STA1 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.0e-19
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 2   QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKF 61
           +RKTKSIDA++KCD DPH+  AVAKLFW  +KV  AR W +R VT+ P +G FW L+YKF
Sbjct: 910 RRKTKSIDAMKKCDRDPHVTIAVAKLFWQDKKVEKARAWFERAVTVGPDIGDFWALFYKF 969

Query: 62  ELQ 65
           ELQ
Sbjct: 970 ELQ 972

[Close]

BLAST of HG10012472 vs. ExPASy Swiss-Prot
Match: Q2KJJ0 (Pre-mRNA-processing factor 6 OS=Bos taurus OX=9913 GN=PRPF6 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.7e-17
Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 2   QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKF 61
           QRKTKS+DAL+KC+HDPH++ AVAKLFW  RK+  AR W  R V +   +G  W  +YKF
Sbjct: 825 QRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKF 884

Query: 62  ELQQVEE 69
           ELQ   E
Sbjct: 885 ELQHGTE 891

[Close]

BLAST of HG10012472 vs. ExPASy Swiss-Prot
Match: Q91YR7 (Pre-mRNA-processing factor 6 OS=Mus musculus OX=10090 GN=Prpf6 PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.7e-17
Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 2   QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKF 61
           QRKTKS+DAL+KC+HDPH++ AVAKLFW  RK+  AR W  R V +   +G  W  +YKF
Sbjct: 825 QRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKF 884

Query: 62  ELQQVEE 69
           ELQ   E
Sbjct: 885 ELQHGTE 891

[Close]

BLAST of HG10012472 vs. ExPASy Swiss-Prot
Match: A1A5S1 (Pre-mRNA-processing factor 6 OS=Rattus norvegicus OX=10116 GN=Prpf6 PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.7e-17
Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 2   QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKF 61
           QRKTKS+DAL+KC+HDPH++ AVAKLFW  RK+  AR W  R V +   +G  W  +YKF
Sbjct: 825 QRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKF 884

Query: 62  ELQQVEE 69
           ELQ   E
Sbjct: 885 ELQHGTE 891

[Close]

BLAST of HG10012472 vs. ExPASy Swiss-Prot
Match: O94906 (Pre-mRNA-processing factor 6 OS=Homo sapiens OX=9606 GN=PRPF6 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 8.0e-17
Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 2   QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKF 61
           QR+TKS+DAL+KC+HDPH++ AVAKLFW  RK+  AR W  R V +   +G  W  +YKF
Sbjct: 825 QRRTKSVDALKKCEHDPHVLLAVAKLFWSQRKITKAREWFHRTVKIDSDLGDAWAFFYKF 884

Query: 62  ELQQVEE 69
           ELQ   E
Sbjct: 885 ELQHGTE 891

[Close]

BLAST of HG10012472 vs. ExPASy TrEMBL
Match: B9RW28 (Pre-mRNA splicing factor, putative OS=Ricinus communis OX=3988 GN=RCOM_1175540 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 9.2e-24
Identity = 61/104 (58.65%), Postives = 73/104 (70.19%), Query Frame = 0


Query: 2    QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKF 61
            QRKTKS+DAL+KCDHDPH+IAAVAKLFWH RKV+ ARTWL R VTLAP +G FW LYYKF
Sbjct: 907  QRKTKSMDALKKCDHDPHVIAAVAKLFWHDRKVDKARTWLNRAVTLAPDIGDFWALYYKF 966

Query: 62   ELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVDPKEKQ 106
            ELQ   E    +Q D+L   I      GE +  I ++V+   +Q
Sbjct: 967  ELQHGTE---ENQRDVLKRCIAAEPKHGEKWQAISKAVENAHQQ 1007

[Close]

BLAST of HG10012472 vs. ExPASy TrEMBL
Match: A0A6J1I4P8 (protein STABILIZED1 OS=Cucurbita maxima OX=3661 GN=LOC111469607 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 9.2e-24
Identity = 60/99 (60.61%), Postives = 72/99 (72.73%), Query Frame = 0


Query: 2   QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKF 61
           QRKTKS+DAL+KCDHDPH+IAAVAKLFWH RKV+ ARTWL R VTLAP +G FWVLYYKF
Sbjct: 899 QRKTKSMDALKKCDHDPHVIAAVAKLFWHDRKVDKARTWLNRAVTLAPDIGDFWVLYYKF 958

Query: 62  ELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVD 101
           ELQ   +    +Q D+L   I      GE +  I ++V+
Sbjct: 959 ELQHGTD---ENQKDVLKRCIAAEPKHGEKWQMISKAVE 994

[Close]

BLAST of HG10012472 vs. ExPASy TrEMBL
Match: A0A6J1G7D8 (protein STABILIZED1 OS=Cucurbita moschata OX=3662 GN=LOC111451435 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 9.2e-24
Identity = 60/99 (60.61%), Postives = 72/99 (72.73%), Query Frame = 0


Query: 2   QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKF 61
           QRKTKS+DAL+KCDHDPH+IAAVAKLFWH RKV+ ARTWL R VTLAP +G FWVLYYKF
Sbjct: 899 QRKTKSMDALKKCDHDPHVIAAVAKLFWHDRKVDKARTWLNRAVTLAPDIGDFWVLYYKF 958

Query: 62  ELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVD 101
           ELQ   +    +Q D+L   I      GE +  I ++V+
Sbjct: 959 ELQHGTD---ENQKDVLKRCIAAEPKHGEKWQMISKAVE 994

[Close]

BLAST of HG10012472 vs. ExPASy TrEMBL
Match: A0A5B7BJW0 (Putative pre-mRNA splicing factor (Fragment) OS=Davidia involucrata OX=16924 GN=Din_038530 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.2e-23
Identity = 60/100 (60.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 2   QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKF 61
           QRKTKS+DAL+KCDHDPH+IAAVAKLFWH RKV+ AR+WL R VTLAP +G FW LYYKF
Sbjct: 287 QRKTKSMDALKKCDHDPHVIAAVAKLFWHDRKVDKARSWLNRAVTLAPDIGDFWALYYKF 346

Query: 62  ELQQ-VEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVD 101
           ELQ  +EE    +Q D+L   I+     GE +  I ++V+
Sbjct: 347 ELQHGIEE----NQKDVLKRCIIAEPKHGEKWQAISKAVE 382

[Close]

BLAST of HG10012472 vs. ExPASy TrEMBL
Match: A0A067JJS0 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_25809 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.0e-23
Identity = 60/104 (57.69%), Postives = 72/104 (69.23%), Query Frame = 0


Query: 2   QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKF 61
           QRK+KS+DAL+KCDHDPH+IAAVAKLFWH RKV+ ARTWL R VTLAP  G FW LYYKF
Sbjct: 896 QRKSKSMDALKKCDHDPHVIAAVAKLFWHDRKVDKARTWLNRAVTLAPDTGDFWALYYKF 955

Query: 62  ELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVDPKEKQ 106
           ELQ   E    +Q D+L   +      GE +  I ++VD   +Q
Sbjct: 956 ELQHGTE---ENQKDVLKRCVAAEPKHGEKWQAISKAVDNAHQQ 996

[Close]

BLAST of HG10012472 vs. TAIR 10
Match: AT4G03430.1 (pre-mRNA splicing factor-related )

HSP 1 Score: 95.1 bits (235), Expect = 3.6e-20
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 2   QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKF 61
           +RKTKSIDA++KCD DPH+  AVAKLFW  +KV  AR W +R VT+ P +G FW L+YKF
Sbjct: 910 RRKTKSIDAMKKCDRDPHVTIAVAKLFWQDKKVEKARAWFERAVTVGPDIGDFWALFYKF 969

Query: 62  ELQ 65
           ELQ
Sbjct: 970 ELQ 972

[Close]

BLAST of HG10012472 vs. TAIR 10
Match: AT3G57410.1 (villin 3 )

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-12
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 65  QVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVDPKEKQNA 108
           QVEEI+N  QDDLLTEE+ +LDT  EVF+W+GQ VDPKEKQ A
Sbjct: 636 QVEEIHNFDQDDLLTEEMHLLDTHAEVFVWVGQCVDPKEKQTA 678

[Close]

BLAST of HG10012472 vs. TAIR 10
Match: AT2G41740.1 (villin 2 )

HSP 1 Score: 69.3 bits (168), Expect = 2.1e-12
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 65  QVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVDPKEKQ 106
           QVEEIYN +QDDLLTE+I  LDT  EVF+W+GQ V+PKEKQ
Sbjct: 634 QVEEIYNFAQDDLLTEDIYFLDTHAEVFVWVGQCVEPKEKQ 674

[Close]

BLAST of HG10012472 vs. TAIR 10
Match: AT5G57320.1 (villin, putative )

HSP 1 Score: 61.6 bits (148), Expect = 4.4e-10
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 59  YKFELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVDPKEKQNA 108
           Y  E  +  EI+N +QDDL+TE+I ILD   EVF+W+GQ VDPK+K  A
Sbjct: 631 YTNESLKATEIFNFTQDDLMTEDIFILDCHTEVFVWVGQQVDPKKKPQA 679

[Close]

BLAST of HG10012472 vs. TAIR 10
Match: AT4G30160.1 (villin 4 )

HSP 1 Score: 59.3 bits (142), Expect = 2.2e-09
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 62  ELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVDPKEK 105
           E+ +V EIYN +QDDL+TE+I I+D   E+F+W+GQ V PK K
Sbjct: 632 EVLKVTEIYNFTQDDLMTEDIFIIDCHSEIFVWVGQEVVPKNK 674

The following BLAST results are available for this feature:

BLAST of HG10012472 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG8498303.1	1.9e-23	58.59	hypothetical protein CXB51_007067 [Gossypium anomalum]	[more]
XP_002517947.1	1.9e-23	58.65	protein STABILIZED1 [Ricinus communis] >EEF44465.1 pre-mRNA splicing factor, put...	[more]
XP_023532967.1	1.9e-23	60.61	protein STABILIZED1 [Cucurbita pepo subsp. pepo]	[more]
XP_022947634.1	1.9e-23	60.61	protein STABILIZED1 [Cucurbita moschata] >KAG6604802.1 Protein STABILIZED1, part...	[more]
XP_038907061.1	1.9e-23	62.00	protein STABILIZED1 [Benincasa hispida]	[more]

BLAST of HG10012472 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT71	5.0e-19	63.49	Protein STABILIZED1 OS=Arabidopsis thaliana OX=3702 GN=STA1 PE=1 SV=1	[more]
Q2KJJ0	4.7e-17	56.72	Pre-mRNA-processing factor 6 OS=Bos taurus OX=9913 GN=PRPF6 PE=2 SV=1	[more]
Q91YR7	4.7e-17	56.72	Pre-mRNA-processing factor 6 OS=Mus musculus OX=10090 GN=Prpf6 PE=1 SV=1	[more]
A1A5S1	4.7e-17	56.72	Pre-mRNA-processing factor 6 OS=Rattus norvegicus OX=10116 GN=Prpf6 PE=1 SV=1	[more]
O94906	8.0e-17	55.22	Pre-mRNA-processing factor 6 OS=Homo sapiens OX=9606 GN=PRPF6 PE=1 SV=1	[more]

BLAST of HG10012472 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
B9RW28	9.2e-24	58.65	Pre-mRNA splicing factor, putative OS=Ricinus communis OX=3988 GN=RCOM_1175540 P...	[more]
A0A6J1I4P8	9.2e-24	60.61	protein STABILIZED1 OS=Cucurbita maxima OX=3661 GN=LOC111469607 PE=4 SV=1	[more]
A0A6J1G7D8	9.2e-24	60.61	protein STABILIZED1 OS=Cucurbita moschata OX=3662 GN=LOC111451435 PE=4 SV=1	[more]
A0A5B7BJW0	1.2e-23	60.00	Putative pre-mRNA splicing factor (Fragment) OS=Davidia involucrata OX=16924 GN=...	[more]
A0A067JJS0	2.0e-23	57.69	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_25809 PE=4 SV=1	[more]

BLAST of HG10012472 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G03430.1	3.6e-20	63.49	pre-mRNA splicing factor-related	[more]
AT3G57410.1	1.2e-12	72.09	villin 3	[more]
AT2G41740.1	2.1e-12	73.17	villin 2	[more]
AT5G57320.1	4.4e-10	55.10	villin, putative	[more]
AT4G30160.1	2.2e-09	55.81	villin 4	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007122	Villin/Gelsolin	PRINTS	PR00597	GELSOLIN	coord: 74..96 score: 51.58 coord: 103..107 score: 13.41
IPR029006	ADF-H/Gelsolin-like domain superfamily	GENE3D	3.40.20.10	Severin	coord: 57..107 e-value: 4.7E-10 score: 41.5
IPR007123	Gelsolin-like domain	PFAM	PF00626	Gelsolin	coord: 68..105 e-value: 2.4E-5 score: 24.2
IPR045075	Pre-mRNA-splicing factor Syf1-like	PANTHER	PTHR11246	PRE-MRNA SPLICING FACTOR	coord: 2..100
IPR027108	Pre-mRNA-processing factor 6/Prp1/STA1	PANTHER	PTHR11246:SF1	PRE-MRNA-PROCESSING FACTOR 6	coord: 2..100
IPR036180	Gelsolin-like domain superfamily	SUPERFAMILY	82754	C-terminal, gelsolin-like domain of Sec23/24	coord: 58..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10012472.1	HG10012472.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0080188	gene silencing by RNA-directed DNA methylation
biological_process	GO:2000630	positive regulation of miRNA metabolic process
biological_process	GO:2000636	positive regulation of primary miRNA processing
biological_process	GO:0000244	spliceosomal tri-snRNP complex assembly
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
molecular_function	GO:0051015	actin filament binding