HG10012459 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10012459
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr01: 21421640 .. 21421849 (+)
RNA-Seq Expression	HG10012459
Synteny	HG10012459

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGAAGAGATTATGGGAATGAATATGAAGGTAATTATTTTGATGAAAGTGGTGAAACAATTAGAAGAAGGATGTGGCCAAGTGATGAAGATAGAGGAAGTAGATGGGTAGCTGAGCCTGGAATTGATCGTAAAGCTTCCGCTTTTATTGCTAAATTCTATGAAGCTCGTGTTTCTGATCCAGAACGCCAAACTTTTTCTCTTTAA

mRNA sequence

ATGGGAGGAAGAGATTATGGGAATGAATATGAAGGTAATTATTTTGATGAAAGTGGTGAAACAATTAGAAGAAGGATGTGGCCAAGTGATGAAGATAGAGGAAGTAGATGGGTAGCTGAGCCTGGAATTGATCGTAAAGCTTCCGCTTTTATTGCTAAATTCTATGAAGCTCGTGTTTCTGATCCAGAACGCCAAACTTTTTCTCTTTAA

Coding sequence (CDS)

ATGGGAGGAAGAGATTATGGGAATGAATATGAAGGTAATTATTTTGATGAAAGTGGTGAAACAATTAGAAGAAGGATGTGGCCAAGTGATGAAGATAGAGGAAGTAGATGGGTAGCTGAGCCTGGAATTGATCGTAAAGCTTCCGCTTTTATTGCTAAATTCTATGAAGCTCGTGTTTCTGATCCAGAACGCCAAACTTTTTCTCTTTAA

Protein sequence

MGGRDYGNEYEGNYFDESGETIRRRMWPSDEDRGSRWVAEPGIDRKASAFIAKFYEARVSDPERQTFSL

Homology

[Close]

BLAST of HG10012459 vs. NCBI nr
Match: KGN57246.2 (hypothetical protein Csa_023700, partial [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 1.5e-26
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1  MGGRDYGNEYEGNYFDESGETIRRRMWPSDEDRGSRWVAEPGIDRKASAFIAKFYEARVS 60
          MGGRDYGN+YEG+YF++    IRRRMWPSDEDRGSRWVAEPGIDRKASAFIA+FYEARVS
Sbjct: 8  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 67

Query: 61 DPERQTFSL 70
          DPERQT SL
Sbjct: 68 DPERQTLSL 76

[Close]

BLAST of HG10012459 vs. NCBI nr
Match: ADN34048.1 (hypothetical protein [Cucumis melo subsp. melo] >KAA0052142.1 hypothetical protein E6C27_scaffold1589G00120 [Cucumis melo var. makuwa] >TYK05109.1 hypothetical protein E5676_scaffold1769G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 1.4e-24
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1  MGGRDYGNEYEGNYFDESGETIRRRMWPSDEDRGSRWVAEPGIDRKASAFIAKFYEARVS 60
          MGGRDYGN+Y G + D+SGE +RRRMWPSDEDRGSRWVAEPGIDRKASAFIA+FYEARVS
Sbjct: 1  MGGRDYGNDYGGYFEDQSGE-MRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60

Query: 61 DPERQTFSL 70
          DPERQT SL
Sbjct: 61 DPERQTLSL 68

[Close]

BLAST of HG10012459 vs. NCBI nr
Match: XP_022138231.1 (uncharacterized protein LOC111009454 [Momordica charantia])

HSP 1 Score: 102.1 bits (253), Expect = 2.0e-18
Identity = 53/69 (76.81%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 1  MGGRDYGNEYEGNYFDESGETIRRRMWPSDEDRGSRWVAEPGIDRKASAFIAKFYEARVS 60
          MGGR   +  +G Y+DES E IRRRMWPSDEDRG RWVAEPGIDRKASAFIA+FYEARVS
Sbjct: 23 MGGR---SSEDGGYWDESAE-IRRRMWPSDEDRG-RWVAEPGIDRKASAFIARFYEARVS 82

Query: 61 DPERQTFSL 70
          DP+RQTF++
Sbjct: 83 DPQRQTFAV 86

[Close]

BLAST of HG10012459 vs. NCBI nr
Match: KAG6597601.1 (hypothetical protein SDJN03_10781, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.1 bits (240), Expect = 6.5e-17
Identity = 52/68 (76.47%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 2  GGRDYGNEYEGNYFDESGETIRRRMWPSDEDRGSRWVAEPGIDRKASAFIAKFYEARVSD 61
          GGRD G      Y+DESGE IRRRMWPSDED  +RWVAEPGIDRKASAFIA+FY+ARVSD
Sbjct: 18 GGRDEG------YWDESGE-IRRRMWPSDED--TRWVAEPGIDRKASAFIARFYDARVSD 76

Query: 62 PERQTFSL 70
          PERQT S+
Sbjct: 78 PERQTLSV 76

[Close]

BLAST of HG10012459 vs. NCBI nr
Match: KAG7029045.1 (hypothetical protein SDJN02_10228, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.1 bits (240), Expect = 6.5e-17
Identity = 52/68 (76.47%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 2  GGRDYGNEYEGNYFDESGETIRRRMWPSDEDRGSRWVAEPGIDRKASAFIAKFYEARVSD 61
          GGRD G      Y+DESGE IRRRMWPSDED  +RWVAEPGIDRKASAFIA+FY+ARVSD
Sbjct: 25 GGRDEG------YWDESGE-IRRRMWPSDED--TRWVAEPGIDRKASAFIARFYDARVSD 83

Query: 62 PERQTFSL 70
          PERQT S+
Sbjct: 85 PERQTLSV 83

[Close]

BLAST of HG10012459 vs. ExPASy TrEMBL
Match: A0A0A0LAW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171730 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.5e-27
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1  MGGRDYGNEYEGNYFDESGETIRRRMWPSDEDRGSRWVAEPGIDRKASAFIAKFYEARVS 60
          MGGRDYGN+YEG+YF++    IRRRMWPSDEDRGSRWVAEPGIDRKASAFIA+FYEARVS
Sbjct: 1  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60

Query: 61 DPERQTFSL 70
          DPERQT SL
Sbjct: 61 DPERQTLSL 69

[Close]

BLAST of HG10012459 vs. ExPASy TrEMBL
Match: A0A5A7U8R2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1769G00130 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.0e-25
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1  MGGRDYGNEYEGNYFDESGETIRRRMWPSDEDRGSRWVAEPGIDRKASAFIAKFYEARVS 60
          MGGRDYGN+Y G + D+SGE +RRRMWPSDEDRGSRWVAEPGIDRKASAFIA+FYEARVS
Sbjct: 1  MGGRDYGNDYGGYFEDQSGE-MRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60

Query: 61 DPERQTFSL 70
          DPERQT SL
Sbjct: 61 DPERQTLSL 68

[Close]

BLAST of HG10012459 vs. ExPASy TrEMBL
Match: E5GC50 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.0e-25
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1  MGGRDYGNEYEGNYFDESGETIRRRMWPSDEDRGSRWVAEPGIDRKASAFIAKFYEARVS 60
          MGGRDYGN+Y G + D+SGE +RRRMWPSDEDRGSRWVAEPGIDRKASAFIA+FYEARVS
Sbjct: 1  MGGRDYGNDYGGYFEDQSGE-MRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60

Query: 61 DPERQTFSL 70
          DPERQT SL
Sbjct: 61 DPERQTLSL 68

[Close]

BLAST of HG10012459 vs. ExPASy TrEMBL
Match: A0A6J1C955 (uncharacterized protein LOC111009454 OS=Momordica charantia OX=3673 GN=LOC111009454 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.8e-19
Identity = 53/69 (76.81%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 1  MGGRDYGNEYEGNYFDESGETIRRRMWPSDEDRGSRWVAEPGIDRKASAFIAKFYEARVS 60
          MGGR   +  +G Y+DES E IRRRMWPSDEDRG RWVAEPGIDRKASAFIA+FYEARVS
Sbjct: 23 MGGR---SSEDGGYWDESAE-IRRRMWPSDEDRG-RWVAEPGIDRKASAFIARFYEARVS 82

Query: 61 DPERQTFSL 70
          DP+RQTF++
Sbjct: 83 DPQRQTFAV 86

[Close]

BLAST of HG10012459 vs. ExPASy TrEMBL
Match: A0A6J1FBH6 (uncharacterized protein LOC111442555 OS=Cucurbita moschata OX=3662 GN=LOC111442555 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.0e-17
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 2  GGRDYGNEYEGNYFDESGETIRRRMWPSDEDRGSRWVAEPGIDRKASAFIAKFYEARVSD 61
          GGRD G      Y+DESGE IRRRMWPSDED  +RWVAEPGIDRKASAFIA+FY+ARVSD
Sbjct: 25 GGRDEG------YWDESGE-IRRRMWPSDED--TRWVAEPGIDRKASAFIARFYDARVSD 83

Query: 62 PERQTFSL 70
          PERQT ++
Sbjct: 85 PERQTLAV 83

[Close]

BLAST of HG10012459 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 5.7e-11
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 24 RRMWPSDEDRGSRWVAEPGIDRKASAFIAKFYEARVSDPERQT 67
          R+ W SDED+   WVAEPGIDRKASAFIAKF+ +RVS+ ERQT
Sbjct: 24 RKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSESERQT 65

[Close]

BLAST of HG10012459 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 61.2 bits (147), Expect = 3.7e-10
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 4  RDYGNEYEGNYFDESGETIRRRMWPSDEDRGSRWVAEPGIDRKASAFIAKFYEARVSDPE 63
          R +  E +G++ D+ G T  R+   SDED+   WVAEPGIDRKASAFIAKF+  RVS+ E
Sbjct: 23 RSHRVEADGSW-DDFGYT--RKAMASDEDK-RYWVAEPGIDRKASAFIAKFHATRVSESE 82

Query: 64 RQTFS 69
          RQT S
Sbjct: 83 RQTLS 83

[Close]

BLAST of HG10012459 vs. TAIR 10
Match: AT1G48325.1 (Expressed protein )

HSP 1 Score: 46.6 bits (109), Expect = 9.4e-06
Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 13 NYFDESGETIRRRMWPSDEDRGSRWVAEPGIDRKASAFIAKFYEARVSDPE 64
          N+ +E    +R R+  +D+D  S  +AEP IDR+A+AFIAKF+E  + D E
Sbjct: 32 NWNEERMINVRPRIMTTDDDGCSWTIAEPCIDRRATAFIAKFHETPIQDTE 82

The following BLAST results are available for this feature:

BLAST of HG10012459 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57246.2	1.5e-26	85.51	hypothetical protein Csa_023700, partial [Cucumis sativus]	[more]
ADN34048.1	1.4e-24	85.51	hypothetical protein [Cucumis melo subsp. melo] >KAA0052142.1 hypothetical prote...	[more]
XP_022138231.1	2.0e-18	76.81	uncharacterized protein LOC111009454 [Momordica charantia]	[more]
KAG6597601.1	6.5e-17	76.47	hypothetical protein SDJN03_10781, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7029045.1	6.5e-17	76.47	hypothetical protein SDJN02_10228, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of HG10012459 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10012459 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAW1	7.5e-27	85.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171730 PE=4 SV=1	[more]
A0A5A7U8R2	7.0e-25	85.51	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E5GC50	7.0e-25	85.51	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A6J1C955	9.8e-19	76.81	uncharacterized protein LOC111009454 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A6J1FBH6	7.0e-17	75.00	uncharacterized protein LOC111442555 OS=Cucurbita moschata OX=3662 GN=LOC1114425...	[more]

BLAST of HG10012459 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G26620.1	5.7e-11	72.09	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G05858.1	3.7e-10	56.92	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G48325.1	9.4e-06	45.10	Expressed protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 41..56 e-value: 1.0E-4 score: 21.8
None	No IPR available	PANTHER	PTHR33511	OS06G0632400 PROTEIN	coord: 13..69
None	No IPR available	PANTHER	PTHR33511:SF23	SUBFAMILY NOT NAMED	coord: 13..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10012459.1	HG10012459.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006897	endocytosis