HG10012414 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10012414
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr01: 20928880 .. 20929391 (+)
RNA-Seq ExpressionHG10012414
SyntenyHG10012414
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCCCTAGGAGGATTTCCCTTGTCTTCAAGCTTCTTTCCTTTGCTTTGCTCCTCATTTTCTCTGTTGTTTCCACAACCAACAACATCGAGCCTTCGCTCCACAAGTCTCGTATTCGTAAGTTGTCTCATTATTGTTTGATATATACTAGCTGTTAAGAGTATGTTTGGAATGGCTTTTGAAATAATGTTTTTAGATTTTGCAGTTCTTTTTTTCTTGAACACTTTCGAATGAAAATTGATTGAATTCAATAGTAAATATTCCTGAATTAAATCTTATAATAAAATGATGAAATACATATAATGTAGCCCTAATTTAGGAAACTTTATTTTAGAATATGGTTTGATTTTGAATTTTTTTGTGTAAGGTTTCAGGTAAAATGGGTGTGGAGTACTACAAAAATGTTGTGGAGGATAATGTTGTTGTACCAAAAGTAATGAAACCAAGTTCAGAGGATTTCCCATGGGGGGGAGGTTATATTCATCATCCACACTTAAGCAACCCATGA

mRNA sequence

ATGGCTTCCCCTAGGAGGATTTCCCTTGTCTTCAAGCTTCTTTCCTTTGCTTTGCTCCTCATTTTCTCTGTTGTTTCCACAACCAACAACATCGAGCCTTCGCTCCACAAGTCTCGTATTCGTAAAATGGGTGTGGAGTACTACAAAAATGTTGTGGAGGATAATGTTGTTGTACCAAAAGTAATGAAACCAAGTTCAGAGGATTTCCCATGGGGGGGAGGTTATATTCATCATCCACACTTAAGCAACCCATGA

Coding sequence (CDS)

ATGGCTTCCCCTAGGAGGATTTCCCTTGTCTTCAAGCTTCTTTCCTTTGCTTTGCTCCTCATTTTCTCTGTTGTTTCCACAACCAACAACATCGAGCCTTCGCTCCACAAGTCTCGTATTCGTAAAATGGGTGTGGAGTACTACAAAAATGTTGTGGAGGATAATGTTGTTGTACCAAAAGTAATGAAACCAAGTTCAGAGGATTTCCCATGGGGGGGAGGTTATATTCATCATCCACACTTAAGCAACCCATGA

Protein sequence

MASPRRISLVFKLLSFALLLIFSVVSTTNNIEPSLHKSRIRKMGVEYYKNVVEDNVVVPKVMKPSSEDFPWGGGYIHHPHLSNP
Homology
BLAST of HG10012414 vs. NCBI nr
Match: KAE8650426.1 (hypothetical protein Csa_009889 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 6.5e-19
Identity = 57/85 (67.06%), Postives = 67/85 (78.82%), Query Frame = 0

Query: 1  MASPRRISLVFKLLSFALLLIFSVVSTTNN-IEPSLHKSRIRKMGVEYYKNVVEDNVVVP 60
          MASP RI L+ KLL F+LLLIFS VSTTNN ++P  HK RIRK+GV+   N  +   VVP
Sbjct: 5  MASPWRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAG-VVP 64

Query: 61 KVMKPSSEDFPWGGGYIHHPHLSNP 85
          +V+KP+SEDFPWGGGYI HPHLSNP
Sbjct: 65 RVIKPTSEDFPWGGGYI-HPHLSNP 87

BLAST of HG10012414 vs. NCBI nr
Match: KAA0067663.1 (hypothetical protein E6C27_scaffold70G00320 [Cucumis melo var. makuwa] >TYK23667.1 hypothetical protein E5676_scaffold577G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 3.7e-14
Identity = 50/84 (59.52%), Postives = 59/84 (70.24%), Query Frame = 0

Query: 2  ASPRRISLVFKLLSFALLLIF--SVVSTTNNIEPSLHKSRIRKMGVEYYKNVVEDNVVVP 61
          +SP +ISL+ KLL FA LL    + VS TNNI P LHK  IRKMGVEY K   E  VVVP
Sbjct: 3  SSPMKISLMLKLLFFANLLFIASTTVSATNNI-PLLHKPPIRKMGVEYKKG--EKAVVVP 62

Query: 62 KVMKPSSEDFPWGGGYIHHPHLSN 84
          KV +P+S+D PWGGGY+H P + N
Sbjct: 63 KVNRPTSDDVPWGGGYVHRPPILN 83

BLAST of HG10012414 vs. NCBI nr
Match: KAE8650427.1 (hypothetical protein Csa_010020 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 4.1e-13
Identity = 48/84 (57.14%), Postives = 57/84 (67.86%), Query Frame = 0

Query: 2  ASPRRISLVFKLLSFALLLI--FSVVSTTNNIEPSLHKSRIRKMGVEYYKNVVEDNVVVP 61
          +SP +ISL+ KLL FA LL   ++ +S TNNI P LHK  IRKM V Y K   E  VVVP
Sbjct: 7  SSPMKISLMLKLLFFATLLFIAYTTISATNNI-PLLHKPPIRKMAVGYRKG--EKAVVVP 66

Query: 62 KVMKPSSEDFPWGGGYIHHPHLSN 84
          KV KP+S DFPWGGGY+  P + N
Sbjct: 67 KVYKPTSADFPWGGGYVRRPPILN 87

BLAST of HG10012414 vs. NCBI nr
Match: KAG7014832.1 (hypothetical protein SDJN02_22461 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 58.9 bits (141), Expect = 2.4e-05
Identity = 40/85 (47.06%), Postives = 50/85 (58.82%), Query Frame = 0

Query: 1  MASPR--RISLVFKLLSFALLLIFSVVSTTNNIEPSLHKSRIRKMGVEYYKNVVEDNVVV 60
          MASPR  RISL+ +LL FALLL+ S  S  N+ +  LH  R  KM +EY        V  
Sbjct: 1  MASPRRIRISLLLRLLFFALLLVASTASAANS-KALLHNPRTPKMAMEY------GQVGK 60

Query: 61 PKVMKPSSEDFPWGGGYIHHPHLSN 84
              KP+++D PWGGGY+  P LSN
Sbjct: 61 GTSKKPTADDVPWGGGYV-PPILSN 77

BLAST of HG10012414 vs. ExPASy TrEMBL
Match: A0A0A0L653 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175590 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.1e-19
Identity = 57/85 (67.06%), Postives = 67/85 (78.82%), Query Frame = 0

Query: 1  MASPRRISLVFKLLSFALLLIFSVVSTTNN-IEPSLHKSRIRKMGVEYYKNVVEDNVVVP 60
          MASP RI L+ KLL F+LLLIFS VSTTNN ++P  HK RIRK+GV+   N  +   VVP
Sbjct: 1  MASPWRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAG-VVP 60

Query: 61 KVMKPSSEDFPWGGGYIHHPHLSNP 85
          +V+KP+SEDFPWGGGYI HPHLSNP
Sbjct: 61 RVIKPTSEDFPWGGGYI-HPHLSNP 83

BLAST of HG10012414 vs. ExPASy TrEMBL
Match: A0A5D3DJ60 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00330 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.8e-14
Identity = 50/84 (59.52%), Postives = 59/84 (70.24%), Query Frame = 0

Query: 2  ASPRRISLVFKLLSFALLLIF--SVVSTTNNIEPSLHKSRIRKMGVEYYKNVVEDNVVVP 61
          +SP +ISL+ KLL FA LL    + VS TNNI P LHK  IRKMGVEY K   E  VVVP
Sbjct: 3  SSPMKISLMLKLLFFANLLFIASTTVSATNNI-PLLHKPPIRKMGVEYKKG--EKAVVVP 62

Query: 62 KVMKPSSEDFPWGGGYIHHPHLSN 84
          KV +P+S+D PWGGGY+H P + N
Sbjct: 63 KVNRPTSDDVPWGGGYVHRPPILN 83

BLAST of HG10012414 vs. ExPASy TrEMBL
Match: A0A0A0L8B2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175600 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.0e-13
Identity = 48/84 (57.14%), Postives = 57/84 (67.86%), Query Frame = 0

Query: 2  ASPRRISLVFKLLSFALLLI--FSVVSTTNNIEPSLHKSRIRKMGVEYYKNVVEDNVVVP 61
          +SP +ISL+ KLL FA LL   ++ +S TNNI P LHK  IRKM V Y K   E  VVVP
Sbjct: 3  SSPMKISLMLKLLFFATLLFIAYTTISATNNI-PLLHKPPIRKMAVGYRKG--EKAVVVP 62

Query: 62 KVMKPSSEDFPWGGGYIHHPHLSN 84
          KV KP+S DFPWGGGY+  P + N
Sbjct: 63 KVYKPTSADFPWGGGYVRRPPILN 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8650426.16.5e-1967.06hypothetical protein Csa_009889 [Cucumis sativus][more]
KAA0067663.13.7e-1459.52hypothetical protein E6C27_scaffold70G00320 [Cucumis melo var. makuwa] >TYK23667... [more]
KAE8650427.14.1e-1357.14hypothetical protein Csa_010020 [Cucumis sativus][more]
KAG7014832.12.4e-0547.06hypothetical protein SDJN02_22461 [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L6533.1e-1967.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175590 PE=4 SV=1[more]
A0A5D3DJ601.8e-1459.52Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0L8B22.0e-1357.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175600 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10012414.1HG10012414.1mRNA