HG10012297 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10012297
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionrRNA 2'-O-methyltransferase fibrillarin 2-like protein
LocationChr01: 19829521 .. 19835017 (-)
RNA-Seq ExpressionHG10012297
SyntenyHG10012297
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTCAGATCTCAAGAAAAATGTATTTCTAGTAAGTTATAAATTTTTCTTTTAATTACAATTTTTATTTTTGAGATTTTTTTTTAAAGAAAAAAAACCTTAAAACTTACGGGAAACCATATCTTAAAATTTGGTTCCAAATCTTATGTATTTTTTCGTAAGTTGTAATTTTTTTTTCCTTTTTCCCTAAGATTACCATTCTTATTTTTTTAGAATAAAAAGAAAAATAAACTTAAAACTTAAAATTTGGAAAACAATAAGAGTTGGTTCCAAATCTTAAGGGAAAGTTGTTTTCCGTAAGTTTTAATTTTTTTAATTACGATTTTTATTTTTTAGATAAAAAAAGACTTGCAACAAAATATTCCAAATCTTACTAGAAATCCAATTAAAGAAGACCTATCTTTTTGTTTTCACAGGGATATTTTTGTAATATCACTATATGTGCCTTACCAATAAAAGTGTAAAGATATAGGTTAGAAAAAATAGTTTTAAAAAAGTTAGTTCTGAAAGGTGGAAATTTTTTTAGGTTAAAAACAATAATTTCTCAATTTTTATCCCAAAACTTTGGAGTTATGTTAATTAAAAATTCAAACTAATAATTGTATCTATTTAAAACTTAAATTTCTAAGATCATAAAAAATAAAAATAAAAAAACCAATTTATTTTTTAGTTTACACTCTACAATGCTATTTTCTAAACAATCAAAATTGAGTTTGAGTGATTGAAAATATGTTTTGGAGCAATTTTGAACTCAACAACAATAACTCTAACCATTTCAAAACATGCTCTAATACTATAAAGTCTAGATCTAGTTGAAATGTCACCTTAACACGTCATGTCATTTTTGTTTCTCGTCAGCCAACCTACAATTGAGTTGGACAATTTATAACTGTTTTCCTGAACTCCAAAATTAAACTAAAGTGTAGTTTAAATCTCATGAACCAAATCAACATTAATATCAATCTTCAAACTTCAAAGTTAATAAATGTATTTTTATATGGCTTAAGTTCAAAGATGAGAGAAAGAAATGAAGTGGTATGTCAATAAACCTCCTATTGGAATGGATTCTAATGCGTTTGAGGTTATTAAGCTATTGAATAGAGAGGACATTTGTTTTCTTGGGATTGGGACCTTCATCGAGGATACACAGTTTGTTGGGATTGTTGTGAAAATTGTTCAGTTTTCTCACATCCTTCGAGTGGAGAACAAATTTACTCATGATGTTGTAGCTTTAGCCTCCTTTGAAGGATGCTTGTCGATTTGAAAAAATGTTTCTCCCTCCTTAACTAAGGGTCTGGGTGTGGTTGGTCTTAGTGGTTGTATTGTATGCCCTATTGGCCTACAAAAATCATTGAAAAAGATTAAAATAATGCTAAATTATATTTTATAAAAATGTTGTTGAATTTTGTATTATTTGTCAAAAATACTCCCAAACTTTTACAAGTTAAAGATTTTAAACTTTCAAAAGTTTAAAAAATGCTCTCAAACTTTAAAAAATAGTTAAACAAAAAATTAGTTTTGGATAGAAACAATTATTGTTTTGTTCCAAAAACACCTTTAAATTTCAAATTTTTTAAAAAATACCCTTAGAGGAAAGTACAAAAAAATACCATCACTATTAATATTTGAACAAAAATTGTTAATAACTCGTTGTAAAAATACTTCTAAACTTTTTGAAATCTAAGGGTATTTTTGAAGAGTTTCCATCCAAAACTAACTTTAAAAGTAGTTTCGAACTTTTTTTAAAAGCTTAATAGTATTTTTAAAACTTTTAAAAAATTGAAAGTATTTTTAAACAATGATAATTGTTTTAAATGGCAAAACTATTGAAATGTTTTCAAATATAGCAAAACGCTACTGTCGTATGTATCACGTATCACTCAGAGACACTGATAGACAAGTCTATCAGTATCTATCATCACATTTTGTTATATTTATAAATATTTTGGTTCATTGTGTTATATTTGAAAACAAACTTTTAAACAAAGTATAAAATTAGAGGTATTTTTATCTAAAAAAAATAAAAATTTAGATGTATTTTGTATAATAATTTAGAAGAAAAAAAAATGCTTCACGTAGCTTTAGCCAGTGGCATTCTTGAAAATAAACAGAAAATTTGCTTTAACTTTTCCCAAATTGAAACCCTAGGTTACCGTCCCCCAAAACCTCGCGCCCCTCTGTTTGCCGCCGCAGCCCCTATAAATTTAAAACCCTAAACAATCGTCTTCACTTCGTGGCTGTGTTCTGTTGTTCTAAAACCCTAGCGGGAACTATCCTTCGCCGTTCGCTCTCTCAGTGACTGAAATGAGACCTCCTCGAGGTACATACTAGAAACAAGCAGTGCTTGTACTCTTTTGTGTTTACGATAGTCGAATGAGTATGATCGTTTCCATTCTTACTACCTACTGAATCTGTCTCTATGGAATATCGTTGGTTTCGTTGTTTGATAGTTAGTTCCTGCTGTTTAGCGTTATTTCTTTCTTTTACTTGATTTTTTTTTTTGTTTCCTAGCGTCTCTTTCACTGTGTATGTGCACTAAATTGGATAAGTTGGATATGTGCAGGCCGTGGTGGTGGTGGTGGATTTAGGGGCAGAGGTGATGGAGGAAGGGGTGGTAGAGGCAGAGGTGGCGGTGGAGGTAGAGGCGGTGGTGGAGGCAGAGGTATGCAAAGCCGCGGTGGTGGTCGCGGAGGTGGAAGAGGTCGTGGCGGAGGAAGAGGAGGTGGTATGAAAGGTGGAAGCAAAGTTGTTGTCGAACCTCATAGACATGAGGGTATTTTCATTGCCAAGGGTAAAGAAGATGCTCTTGTCACGAAGAATATGGTCTCTGGAGAATCTGTCTACAACGAGAAGAGGATATCCGTACAGGTGATTTGCGTCTAACAGTTATTTTGCGACTAAATGTTTGTTAGTTTTGGAAATGTTCAATGATGTGTTTTAATGTATTATCATTACCCGTGTGAAATTATAGTTAGTATTAATATCTCCAAACAGTTTTGGGTAGTTCTGGCTCGATAGTCAGTGATCGTAATATTTTTTATACTTGAATGATTTATGTAAGTCTATTGTTAGAACTTCAACGCCTGCAATTTTTACAAGTATATAGATTTTTTCGTTTGTTGTCTTTGCAAGTTGTCTGCATAGCTAATTGTTTTATATATAATGCCATCCAGAATGAAGATGGAACAAAAATTGAGTACAGAGTTTGGAACCCATTCAGGTCTAAGTTGGCTGCCGCCGTTCTTGGTGGTGTTGATGACATATGGATTGTGAGTGCTTTTCACCTCCAATTTTCCGTTTTATCTTTTAGCTATTTCACTCTCTAGTTTTTTTCTTTTTCTTTTTCATAACTAGTTTGGTTACGCACGTATTGTAGAAACCTGGTGCTCGAGTGTTGTATCTTGGTGCTGCTTCGGGAACAACTGTATCTCACGTCTCAGATCTTGTCGGCCCTGTAAGTAGTTATCTAGGGAGTATCTTTAGTAGTTTTCATGGAGTGATAGGTTGCTTAACAATTGTTGCTGCTTTCATTTCCAGACTGGTATAGTGTATGCTGTTGAATTCTCCCATAGAAGTGGTAGAGATTTAGTCAACATGGCAAAGAAGCGCACAAATGTTATACCCATCATTGAAGATGCTAGACACCCAGCCAAGTACCGAATGTTGGTTGGTATGGTGGATGTGATATTTTCAGATGTTGCTCAGCCAGATCAGGTTCACTCTTTTTCTTTTTCTTATTTTTGTCCGTGTTACTCTTGAACACCAACCAACTTACTGAATTTTGATTTGCACAGTTTAATTTGTACAATAAATATAATTGTAGCTCTTGTATTTTCTGTTTTCCCCTTATTAACCCTTTTACAATCGAATTCATTGTATTGCTTTTCATCTACTGTTTTCTTCTCAATGAATTTGTTTTCTTGTCACTCTTTCATCTTTTTAGACTTTAAGCCCTTTTCTTCCCAAATTATTTATAGCATATGACGAATTGCTCGGATTCCCCTTCAAGACTTCTTGAATGATGCAAGACCCGAGTTTCTGATGCTTGAAGAAATATTTTTGAATTGTCTTGATATTTCTTTCTAAACTGCACGGTCTGTCTGTCTGATACTAGCGGACTTTTTTGTTTTCCAATTCTTTTTTGTTTCCCATTGTTTATAGTGTTAATTTTTATTGTACATCTACCCCTTGTGGTTGGATTGTCAATTTGCGTTGTTATTTTTCTATTCCTTATGAAATATTTTTGTTATTATTTTGGCACGTCATTGCCATTTTATCTGTGTTTTGATTCTAACCAACTTGTTTTCTTACCATGTTTAGCAATAATTTGAAATCTTAATCTAAATTTCTGATCATTCGACAAGAAATAGCAAATATACCATTACGTTCAAATTTTGACATTTACTTGCCCACACATACTGTTCACAGAATAGGTCTATTGGATCTGGATGGTTATCTAATTGGAAACCATTCTGCTCGATTAATAAGTGGGGTCTTTTTGTGTGTAATCTTTCTAATTTCCCCCCAAAAATCAGCAAAATATTAGCAAATTATTGTGTATATGTGTATTTATGGTAATGATCGACTCTGGATGTCGTACAAAAAAAATGATCTACACTGAATCAGTTCAATTTTGGAGGTTTATATTTTTTGAAGAGTCTGCTAGAATTACTTTTCAACAAAAAAAGAGTCTACTAGAATTAGAATAGAAGTAAAAGAAAAGGAAAGAGAACAACAATGTACATTGTTTAAATCATATTGTTTAAAAATGGGATAAAATGGGATTGTCCTATAACTTTGTGAGCCGGAGCTCTCTCACCCATTTCCGTTCAAATTATATTATTGCTTGATTATAATTTGATTCCCATTTTTTTGGTCATCCTGCAGGTATAATATTTGGTATTGAACATAATGATTGTATCTTTCTTATCATGTTTTTGCCTTTTAGGCTCTTTTCTTTGCCAAGCATGTGATGAATTACTCGGATTCCCCTTCAAGACATCTTGAATGATGCACAACCCGAGTTTCTGATGCGTCCAAGAATATATCATATCATACTTGATCGAACTGAACCCTTCATCAGCCACTCAATTTATGCGTCCTTAAACTACTTACTTCGACATTTCAATTTCATACATTGACTTTTAACTTCCCTTCAATGCAGGCAAGAATTTTAGCACTTAATGCATCATATTTTCTCAAAGTCGGTGGCCATTTTGTTATATCTATCAAGGTGAGTGAAGAATGATTGCCATATTGTTGTTGAAGACAAAAAGACTGCATAATTTGATCACATATTTCTTTTGGAACTTTTGCAGGCCAACTGCATTGACTCAACCGTTCCTGCGGAGGCAGTGTTTGCAAGTGAAGTTAATAAGCTAAAAGCAGATCAGTTCAAACCAACTGAGCAAGTGACTCTAGAACCATTCGAGCGAGATCATGCTTGTGTCGTTGGTGTCTATCGGGCGCCGAAGAAACAGAAGGCTGCAGCATAG

mRNA sequence

ATGGTTTCAGATCTCAAGAAAAATGTATTTCTACGTCTCTTTCACTGTGTATGTGCACTAAATTGGATAAGTTGGATATGTGCAGGCCGTGGTGGTGGTGGTGGATTTAGGGGCAGAGGTGATGGAGGAAGGGGTGGTAGAGGCAGAGGTGGCGGTGGAGGTAGAGGCGGTGGTGGAGGCAGAGGTATGCAAAGCCGCGGTGGTGGTCGCGGAGGTGGAAGAGGTCGTGGCGGAGGAAGAGGAGGTGGTATGAAAGGTGGAAGCAAAGTTGTTGTCGAACCTCATAGACATGAGGGTATTTTCATTGCCAAGGGTAAAGAAGATGCTCTTGTCACGAAGAATATGGTCTCTGGAGAATCTGTCTACAACGAGAAGAGGATATCCGTACAGAATGAAGATGGAACAAAAATTGAGTACAGAGTTTGGAACCCATTCAGGTCTAAGTTGGCTGCCGCCGTTCTTGGTGGTGTTGATGACATATGGATTAAACCTGGTGCTCGAGTGTTGTATCTTGGTGCTGCTTCGGGAACAACTGTATCTCACGTCTCAGATCTTGTCGGCCCTGCAAGAATTTTAGCACTTAATGCATCATATTTTCTCAAAGTCGGTGGCCATTTTGTTATATCTATCAAGGCCAACTGCATTGACTCAACCGTTCCTGCGGAGGCAGTGTTTGCAAGTGAAGTTAATAAGCTAAAAGCAGATCAGTTCAAACCAACTGAGCAAGTGACTCTAGAACCATTCGAGCGAGATCATGCTTGTGTCGTTGGTGTCTATCGGGCGCCGAAGAAACAGAAGGCTGCAGCATAG

Coding sequence (CDS)

ATGGTTTCAGATCTCAAGAAAAATGTATTTCTACGTCTCTTTCACTGTGTATGTGCACTAAATTGGATAAGTTGGATATGTGCAGGCCGTGGTGGTGGTGGTGGATTTAGGGGCAGAGGTGATGGAGGAAGGGGTGGTAGAGGCAGAGGTGGCGGTGGAGGTAGAGGCGGTGGTGGAGGCAGAGGTATGCAAAGCCGCGGTGGTGGTCGCGGAGGTGGAAGAGGTCGTGGCGGAGGAAGAGGAGGTGGTATGAAAGGTGGAAGCAAAGTTGTTGTCGAACCTCATAGACATGAGGGTATTTTCATTGCCAAGGGTAAAGAAGATGCTCTTGTCACGAAGAATATGGTCTCTGGAGAATCTGTCTACAACGAGAAGAGGATATCCGTACAGAATGAAGATGGAACAAAAATTGAGTACAGAGTTTGGAACCCATTCAGGTCTAAGTTGGCTGCCGCCGTTCTTGGTGGTGTTGATGACATATGGATTAAACCTGGTGCTCGAGTGTTGTATCTTGGTGCTGCTTCGGGAACAACTGTATCTCACGTCTCAGATCTTGTCGGCCCTGCAAGAATTTTAGCACTTAATGCATCATATTTTCTCAAAGTCGGTGGCCATTTTGTTATATCTATCAAGGCCAACTGCATTGACTCAACCGTTCCTGCGGAGGCAGTGTTTGCAAGTGAAGTTAATAAGCTAAAAGCAGATCAGTTCAAACCAACTGAGCAAGTGACTCTAGAACCATTCGAGCGAGATCATGCTTGTGTCGTTGGTGTCTATCGGGCGCCGAAGAAACAGAAGGCTGCAGCATAG

Protein sequence

MVSDLKKNVFLRLFHCVCALNWISWICAGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMQSRGGGRGGGRGRGGGRGGGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRVWNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDLVGPARILALNASYFLKVGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGVYRAPKKQKAAA
Homology
[Close]
BLAST of HG10012297 vs. NCBI nr
Match: XP_008439295.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 36a-like [Cucumis melo])

HSP 1 Score: 405.6 bits (1041), Expect = 3.3e-109
Identity = 237/300 (79.00%), Postives = 240/300 (80.00%), Query Frame = 0 

Query: 29  GRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMQSRGGGRGGGRGRGGGRGGGMKGGS 88
           GRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMQSRGGGRGGGRGRGGGRGGGMKGGS
Sbjct: 6   GRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMQSRGGGRGGGRGRGGGRGGGMKGGS 65

Query: 89  KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRVWNPFRSK 148
           KVVVEPHRHEGIFIAKGKEDALVTKNMV+GESVYNEKRISVQNEDGTKIEYRVWNPFRSK
Sbjct: 66  KVVVEPHRHEGIFIAKGKEDALVTKNMVTGESVYNEKRISVQNEDGTKIEYRVWNPFRSK 125

Query: 149 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDLVGP-------------------- 208
           LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSD+VGP                    
Sbjct: 126 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNM 185

Query: 209 ---------------------------------------ARILALNASYFLKVGGHFVIS 268
                                                  ARILALNASYFLK GGHFVIS
Sbjct: 186 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 245

Query: 269 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGVYRAPKKQKAAA 270
           IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG+YRAPKKQKAAA
Sbjct: 246 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA 305

[Close]
BLAST of HG10012297 vs. NCBI nr
Match: XP_023552409.1 (mediator of RNA polymerase II transcription subunit 36a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 404.1 bits (1037), Expect = 9.7e-109
Identity = 236/300 (78.67%), Postives = 239/300 (79.67%), Query Frame = 0 

Query: 29  GRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMQSRGGGRGGGRGRGGGRGGGMKGGS 88
           GRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGM SRGGGRGGGRGRGGGRGGGMKGGS
Sbjct: 6   GRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMASRGGGRGGGRGRGGGRGGGMKGGS 65

Query: 89  KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRVWNPFRSK 148
           KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTK+EYRVWNPFRSK
Sbjct: 66  KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSK 125

Query: 149 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDLVGP-------------------- 208
           LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSD+VGP                    
Sbjct: 126 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNM 185

Query: 209 ---------------------------------------ARILALNASYFLKVGGHFVIS 268
                                                  ARILALNASYFLK GGHFVIS
Sbjct: 186 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 245

Query: 269 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGVYRAPKKQKAAA 270
           IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG+YRAPKKQKAAA
Sbjct: 246 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA 305

[Close]
BLAST of HG10012297 vs. NCBI nr
Match: XP_022141240.1 (mediator of RNA polymerase II transcription subunit 36a-like [Momordica charantia])

HSP 1 Score: 401.7 bits (1031), Expect = 4.8e-108
Identity = 234/300 (78.00%), Postives = 238/300 (79.33%), Query Frame = 0 

Query: 29  GRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMQSRGGGRGGGRGRGGGRGGGMKGGS 88
           GRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGM SRGGGRGGGRGRGGGRGGGMKGGS
Sbjct: 6   GRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMASRGGGRGGGRGRGGGRGGGMKGGS 65

Query: 89  KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRVWNPFRSK 148
           KVV+EPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTK+EYRVWNPFRSK
Sbjct: 66  KVVIEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSK 125

Query: 149 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDLVGP-------------------- 208
           LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSD+VGP                    
Sbjct: 126 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNM 185

Query: 209 ---------------------------------------ARILALNASYFLKVGGHFVIS 268
                                                  ARILALNASYFLK GGHFVIS
Sbjct: 186 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 245

Query: 269 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGVYRAPKKQKAAA 270
           IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG+YRAPKKQK AA
Sbjct: 246 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKPAA 305

[Close]
BLAST of HG10012297 vs. NCBI nr
Match: XP_022984980.1 (probable mediator of RNA polymerase II transcription subunit 36b [Cucurbita maxima] >KAG7014755.1 Mediator of RNA polymerase II transcription subunit 36a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 399.8 bits (1026), Expect = 1.8e-107
Identity = 236/300 (78.67%), Postives = 239/300 (79.67%), Query Frame = 0 

Query: 29  GRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMQSRGGGRGGGRGRGGGRGGGMKGGS 88
           GRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGM SRGGGRGGGRGRGGGRGGGMKGGS
Sbjct: 6   GRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGM-SRGGGRGGGRGRGGGRGGGMKGGS 65

Query: 89  KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRVWNPFRSK 148
           KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTK+EYRVWNPFRSK
Sbjct: 66  KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSK 125

Query: 149 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDLVGP-------------------- 208
           LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSD+VGP                    
Sbjct: 126 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNM 185

Query: 209 ---------------------------------------ARILALNASYFLKVGGHFVIS 268
                                                  ARILALNASYFLK GGHFVIS
Sbjct: 186 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 245

Query: 269 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGVYRAPKKQKAAA 270
           IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG+YRAPKKQKAAA
Sbjct: 246 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA 304

[Close]
BLAST of HG10012297 vs. NCBI nr
Match: XP_022945875.1 (probable mediator of RNA polymerase II transcription subunit 36b [Cucurbita moschata] >XP_022968445.1 probable mediator of RNA polymerase II transcription subunit 36b [Cucurbita maxima] >KAG6574193.1 rRNA 2'-O-methyltransferase fibrillarin 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 399.1 bits (1024), Expect = 3.1e-107
Identity = 235/300 (78.33%), Postives = 237/300 (79.00%), Query Frame = 0 

Query: 29  GRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMQSRGGGRGGGRGRGGGRGGGMKGGS 88
           GRGGGGGFRGRGDGGRGGRGRGGGGGRG GGGRGM SRGGGRGGGRGRGGGRGGGMKGGS
Sbjct: 6   GRGGGGGFRGRGDGGRGGRGRGGGGGRGFGGGRGMASRGGGRGGGRGRGGGRGGGMKGGS 65

Query: 89  KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRVWNPFRSK 148
           KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRVWNPFRSK
Sbjct: 66  KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRVWNPFRSK 125

Query: 149 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDLVGP-------------------- 208
           LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSD+VGP                    
Sbjct: 126 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPSGIVYAVEFSHRSGRDLVNM 185

Query: 209 ---------------------------------------ARILALNASYFLKVGGHFVIS 268
                                                  ARILALNASYFLK GGHFVIS
Sbjct: 186 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 245

Query: 269 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGVYRAPKKQKAAA 270
           IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG+YRAPKKQK AA
Sbjct: 246 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKPAA 305

[Close]
BLAST of HG10012297 vs. ExPASy Swiss-Prot
Match: Q94AH9 (rRNA 2'-O-methyltransferase fibrillarin 2 OS=Arabidopsis thaliana OX=3702 GN=FIB2 PE=1 SV=2)

HSP 1 Score: 308.1 bits (788), Expect = 9.5e-83
Identity = 204/311 (65.59%), Postives = 214/311 (68.81%), Query Frame = 0 

Query: 31  GGGGGFR-GRGDGG-RGGRGRGG-GGGRGG---GGGRGMQSRGG-GRGGGRGRGGGRG-- 90
           G GGGF  GRG GG  GGRG GG  GGRGG   GGGRG   RGG GRG G  RGG RG  
Sbjct: 7   GSGGGFSGGRGRGGYSGGRGDGGFSGGRGGGGRGGGRGFSDRGGRGRGRGPPRGGARGGR 66

Query: 91  -----GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTK 150
                GGMKGGSKV+VEPHRH G+FIAKGKEDALVTKN+V GE+VYNEKRISVQNEDGTK
Sbjct: 67  GPAGRGGMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTK 126

Query: 151 IEYRVWNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDLVGP-------- 210
            EYRVWNPFRSKLAAA+LGGVD+IWIKPGA+VLYLGAASGTTVSHVSDLVGP        
Sbjct: 127 TEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVE 186

Query: 211 ---------------------------------------------------ARILALNAS 269
                                                              ARILALNAS
Sbjct: 187 FSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNAS 246

[Close]
BLAST of HG10012297 vs. ExPASy Swiss-Prot
Match: Q9FEF8 (rRNA 2'-O-methyltransferase fibrillarin 1 OS=Arabidopsis thaliana OX=3702 GN=FIB1 PE=1 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 2.8e-82
Identity = 197/304 (64.80%), Postives = 209/304 (68.75%), Query Frame = 0 

Query: 26  ICAGRGGGGGFRGRGDGGRG-GRGRGGGGGRGGGGGRGMQSRGGGRGGGRGRGGGRGGGM 85
           +  GRGGGG   GR  GGRG G GR  GGGR G  GR    RG GRG  RGRGG   GGM
Sbjct: 5   VTGGRGGGGFRGGRDGGGRGFGGGRSFGGGRSGDRGRS-GPRGRGRGAPRGRGGPPRGGM 64

Query: 86  KGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRVWNP 145
           KGGSKV+VEPHRH G+FIAKGKEDALVTKN+V GE+VYNEKRISVQNEDGTK+EYRVWNP
Sbjct: 65  KGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRVWNP 124

Query: 146 FRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDLVGP---------------- 205
           FRSKLAAA+LGGVD+IWIKPGA+VLYLGAASGTTVSHVSDLVGP                
Sbjct: 125 FRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGRD 184

Query: 206 -------------------------------------------ARILALNASYFLKVGGH 265
                                                      ARILALNAS+FLK GGH
Sbjct: 185 LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASFFLKTGGH 244

Query: 266 FVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGVYRAPKKQ 270
           FVISIKANCIDSTV AEAVF SEV KL+ +QFKP EQVTLEPFERDHACVVG YR PKKQ
Sbjct: 245 FVISIKANCIDSTVAAEAVFQSEVKKLQQEQFKPAEQVTLEPFERDHACVVGGYRMPKKQ 304

[Close]
BLAST of HG10012297 vs. ExPASy Swiss-Prot
Match: Q8I1F4 (rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila erecta OX=7220 GN=Fib PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 1.1e-70
Identity = 177/297 (59.60%), Postives = 196/297 (65.99%), Query Frame = 0 

Query: 29  GRGG-GGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMQSRGGGRGGGRGRGGGRGGGMKGG 88
           GRGG GGG  G G GG GG GRGG GGRGGGGGRG   RGGG  GG GRGGG  GG KGG
Sbjct: 51  GRGGFGGGRGGGGRGGGGGGGRGGFGGRGGGGGRGGGGRGGGGRGGGGRGGG-AGGFKGG 110

Query: 89  SKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRVWNPFRS 148
             V +EPHRHEG+FIA+GKEDALVT+N V G  VY EKRISV+N +G KIEYRVWNPFRS
Sbjct: 111 KTVTIEPHRHEGVFIARGKEDALVTRNFVPGSEVYGEKRISVEN-NGEKIEYRVWNPFRS 170

Query: 149 KLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDLVGP------------------- 208
           KLAAAVLGGV+ I + PG++VLYLGAASGTTVSHVSD+VGP                   
Sbjct: 171 KLAAAVLGGVEQIHMPPGSKVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLIN 230

Query: 209 ----------------------------------------ARILALNASYFLKVGGHFVI 266
                                                    RI+ALNA +FLK GGHFVI
Sbjct: 231 VAKKRTNIIPIIEDARHPHKYRMLVGMVDTIFADVAQPDQGRIVALNAQHFLKNGGHFVI 290

[Close]
BLAST of HG10012297 vs. ExPASy Swiss-Prot
Match: Q9W1V3 (rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila melanogaster OX=7227 GN=Fib PE=2 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 2.7e-69
Identity = 177/306 (57.84%), Postives = 197/306 (64.38%), Query Frame = 0 

Query: 29  GRGGGGGFRGRG--DGGRGGRGRGGG--------GGRGGGGGRGMQSRGGGRGGGRGRGG 88
           GRGGGG   GRG   GGRGG GRGGG        GGRGGGGGRG   RGGG  GG GRGG
Sbjct: 41  GRGGGGDRGGRGGFGGGRGGGGRGGGGGGGRGAFGGRGGGGGRGGGGRGGGGRGGGGRGG 100

Query: 89  GRGGGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIE 148
           G  GG KGG  V +EPHRHEG+FIA+GKEDALVT+N V G  VY EKRISV+  +G KIE
Sbjct: 101 G-AGGFKGGKTVTIEPHRHEGVFIARGKEDALVTRNFVPGSEVYGEKRISVET-NGEKIE 160

Query: 149 YRVWNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDLVGP---------- 208
           YRVWNPFRSKLAAAVLGGV+ I + PG++VLYLGAASGTTVSHVSD+VGP          
Sbjct: 161 YRVWNPFRSKLAAAVLGGVEQIHMPPGSKVLYLGAASGTTVSHVSDVVGPEGLVYAVEFS 220

Query: 209 -------------------------------------------------ARILALNASYF 266
                                                             RI+ALNA +F
Sbjct: 221 HRSGRDLINVAKKRTNIIPIIEDARHPHKYRMLVGMVDTIFADVAQPDQGRIVALNAQHF 280

[Close]
BLAST of HG10012297 vs. ExPASy Swiss-Prot
Match: P22509 (rRNA 2'-O-methyltransferase fibrillarin OS=Rattus norvegicus OX=10116 GN=Fbl PE=1 SV=2)

HSP 1 Score: 260.8 bits (665), Expect = 1.7e-68
Identity = 179/304 (58.88%), Postives = 197/304 (64.80%), Query Frame = 0 

Query: 29  GRGGGGGF-RGRGDGGRGGRGRGGGG----GRGGGGGRGMQSRGGGRGGGRGRGGGRGG- 88
           GRGG GGF  GRG  G GGRGRGGGG    GRGGGGGRG    G   GGGRGRGGGRGG 
Sbjct: 27  GRGGRGGFGGGRGGFGGGGRGRGGGGGGFRGRGGGGGRG---GGFQSGGGRGRGGGRGGK 86

Query: 89  -GMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRV 148
            G + G  V+VEPHRHEG+FI +GKEDALVTKN+V GESVY EKR+S+ +E   KIEYR 
Sbjct: 87  RGNQSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSI-SEGDDKIEYRA 146

Query: 149 WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDLVGP------------- 208
           WNPFRSKLAAA+LGGVD I IKPGA+VLYLGAASGTTVSHVSD+VGP             
Sbjct: 147 WNPFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRS 206

Query: 209 ----------------------------------------------ARILALNASYFLKV 267
                                                          RI+ALNA  FL+ 
Sbjct: 207 GRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRN 266

[Close]
BLAST of HG10012297 vs. ExPASy TrEMBL
Match: A0A1S3AY25 (mediator of RNA polymerase II transcription subunit 36a-like OS=Cucumis melo OX=3656 GN=LOC103484122 PE=3 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 1.6e-109
Identity = 237/300 (79.00%), Postives = 240/300 (80.00%), Query Frame = 0 

Query: 29  GRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMQSRGGGRGGGRGRGGGRGGGMKGGS 88
           GRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMQSRGGGRGGGRGRGGGRGGGMKGGS
Sbjct: 6   GRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMQSRGGGRGGGRGRGGGRGGGMKGGS 65

Query: 89  KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRVWNPFRSK 148
           KVVVEPHRHEGIFIAKGKEDALVTKNMV+GESVYNEKRISVQNEDGTKIEYRVWNPFRSK
Sbjct: 66  KVVVEPHRHEGIFIAKGKEDALVTKNMVTGESVYNEKRISVQNEDGTKIEYRVWNPFRSK 125

Query: 149 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDLVGP-------------------- 208
           LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSD+VGP                    
Sbjct: 126 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNM 185

Query: 209 ---------------------------------------ARILALNASYFLKVGGHFVIS 268
                                                  ARILALNASYFLK GGHFVIS
Sbjct: 186 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 245

Query: 269 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGVYRAPKKQKAAA 270
           IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG+YRAPKKQKAAA
Sbjct: 246 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA 305

[Close]
BLAST of HG10012297 vs. ExPASy TrEMBL
Match: A0A6J1CHH3 (mediator of RNA polymerase II transcription subunit 36a-like OS=Momordica charantia OX=3673 GN=LOC111011688 PE=3 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 2.3e-108
Identity = 234/300 (78.00%), Postives = 238/300 (79.33%), Query Frame = 0 

Query: 29  GRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMQSRGGGRGGGRGRGGGRGGGMKGGS 88
           GRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGM SRGGGRGGGRGRGGGRGGGMKGGS
Sbjct: 6   GRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMASRGGGRGGGRGRGGGRGGGMKGGS 65

Query: 89  KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRVWNPFRSK 148
           KVV+EPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTK+EYRVWNPFRSK
Sbjct: 66  KVVIEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSK 125

Query: 149 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDLVGP-------------------- 208
           LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSD+VGP                    
Sbjct: 126 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNM 185

Query: 209 ---------------------------------------ARILALNASYFLKVGGHFVIS 268
                                                  ARILALNASYFLK GGHFVIS
Sbjct: 186 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 245

Query: 269 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGVYRAPKKQKAAA 270
           IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG+YRAPKKQK AA
Sbjct: 246 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKPAA 305

[Close]
BLAST of HG10012297 vs. ExPASy TrEMBL
Match: A0A6J1JA27 (probable mediator of RNA polymerase II transcription subunit 36b OS=Cucurbita maxima OX=3661 GN=LOC111483086 PE=3 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 8.9e-108
Identity = 236/300 (78.67%), Postives = 239/300 (79.67%), Query Frame = 0 

Query: 29  GRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMQSRGGGRGGGRGRGGGRGGGMKGGS 88
           GRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGM SRGGGRGGGRGRGGGRGGGMKGGS
Sbjct: 6   GRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGM-SRGGGRGGGRGRGGGRGGGMKGGS 65

Query: 89  KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRVWNPFRSK 148
           KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTK+EYRVWNPFRSK
Sbjct: 66  KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSK 125

Query: 149 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDLVGP-------------------- 208
           LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSD+VGP                    
Sbjct: 126 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNM 185

Query: 209 ---------------------------------------ARILALNASYFLKVGGHFVIS 268
                                                  ARILALNASYFLK GGHFVIS
Sbjct: 186 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 245

Query: 269 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGVYRAPKKQKAAA 270
           IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG+YRAPKKQKAAA
Sbjct: 246 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA 304

[Close]
BLAST of HG10012297 vs. ExPASy TrEMBL
Match: A0A6J1HX74 (probable mediator of RNA polymerase II transcription subunit 36b OS=Cucurbita maxima OX=3661 GN=LOC111467690 PE=3 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.5e-107
Identity = 235/300 (78.33%), Postives = 237/300 (79.00%), Query Frame = 0 

Query: 29  GRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMQSRGGGRGGGRGRGGGRGGGMKGGS 88
           GRGGGGGFRGRGDGGRGGRGRGGGGGRG GGGRGM SRGGGRGGGRGRGGGRGGGMKGGS
Sbjct: 6   GRGGGGGFRGRGDGGRGGRGRGGGGGRGFGGGRGMASRGGGRGGGRGRGGGRGGGMKGGS 65

Query: 89  KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRVWNPFRSK 148
           KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRVWNPFRSK
Sbjct: 66  KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRVWNPFRSK 125

Query: 149 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDLVGP-------------------- 208
           LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSD+VGP                    
Sbjct: 126 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPSGIVYAVEFSHRSGRDLVNM 185

Query: 209 ---------------------------------------ARILALNASYFLKVGGHFVIS 268
                                                  ARILALNASYFLK GGHFVIS
Sbjct: 186 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 245

Query: 269 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGVYRAPKKQKAAA 270
           IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG+YRAPKKQK AA
Sbjct: 246 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKPAA 305

[Close]
BLAST of HG10012297 vs. ExPASy TrEMBL
Match: A0A6J1G280 (probable mediator of RNA polymerase II transcription subunit 36b OS=Cucurbita moschata OX=3662 GN=LOC111449984 PE=3 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.5e-107
Identity = 235/300 (78.33%), Postives = 237/300 (79.00%), Query Frame = 0 

Query: 29  GRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMQSRGGGRGGGRGRGGGRGGGMKGGS 88
           GRGGGGGFRGRGDGGRGGRGRGGGGGRG GGGRGM SRGGGRGGGRGRGGGRGGGMKGGS
Sbjct: 6   GRGGGGGFRGRGDGGRGGRGRGGGGGRGFGGGRGMASRGGGRGGGRGRGGGRGGGMKGGS 65

Query: 89  KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRVWNPFRSK 148
           KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRVWNPFRSK
Sbjct: 66  KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRVWNPFRSK 125

Query: 149 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDLVGP-------------------- 208
           LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSD+VGP                    
Sbjct: 126 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPSGIVYAVEFSHRSGRDLVNM 185

Query: 209 ---------------------------------------ARILALNASYFLKVGGHFVIS 268
                                                  ARILALNASYFLK GGHFVIS
Sbjct: 186 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 245

Query: 269 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGVYRAPKKQKAAA 270
           IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG+YRAPKKQK AA
Sbjct: 246 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKPAA 305

[Close]
BLAST of HG10012297 vs. TAIR 10
Match: AT4G25630.1 (fibrillarin 2 )

HSP 1 Score: 308.1 bits (788), Expect = 6.8e-84
Identity = 204/311 (65.59%), Postives = 214/311 (68.81%), Query Frame = 0 

Query: 31  GGGGGFR-GRGDGG-RGGRGRGG-GGGRGG---GGGRGMQSRGG-GRGGGRGRGGGRG-- 90
           G GGGF  GRG GG  GGRG GG  GGRGG   GGGRG   RGG GRG G  RGG RG  
Sbjct: 7   GSGGGFSGGRGRGGYSGGRGDGGFSGGRGGGGRGGGRGFSDRGGRGRGRGPPRGGARGGR 66

Query: 91  -----GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTK 150
                GGMKGGSKV+VEPHRH G+FIAKGKEDALVTKN+V GE+VYNEKRISVQNEDGTK
Sbjct: 67  GPAGRGGMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTK 126

Query: 151 IEYRVWNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDLVGP-------- 210
            EYRVWNPFRSKLAAA+LGGVD+IWIKPGA+VLYLGAASGTTVSHVSDLVGP        
Sbjct: 127 TEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVE 186

Query: 211 ---------------------------------------------------ARILALNAS 269
                                                              ARILALNAS
Sbjct: 187 FSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNAS 246

[Close]
BLAST of HG10012297 vs. TAIR 10
Match: AT5G52470.1 (fibrillarin 1 )

HSP 1 Score: 306.6 bits (784), Expect = 2.0e-83
Identity = 197/304 (64.80%), Postives = 209/304 (68.75%), Query Frame = 0 

Query: 26  ICAGRGGGGGFRGRGDGGRG-GRGRGGGGGRGGGGGRGMQSRGGGRGGGRGRGGGRGGGM 85
           +  GRGGGG   GR  GGRG G GR  GGGR G  GR    RG GRG  RGRGG   GGM
Sbjct: 5   VTGGRGGGGFRGGRDGGGRGFGGGRSFGGGRSGDRGRS-GPRGRGRGAPRGRGGPPRGGM 64

Query: 86  KGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRVWNP 145
           KGGSKV+VEPHRH G+FIAKGKEDALVTKN+V GE+VYNEKRISVQNEDGTK+EYRVWNP
Sbjct: 65  KGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRVWNP 124

Query: 146 FRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDLVGP---------------- 205
           FRSKLAAA+LGGVD+IWIKPGA+VLYLGAASGTTVSHVSDLVGP                
Sbjct: 125 FRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGRD 184

Query: 206 -------------------------------------------ARILALNASYFLKVGGH 265
                                                      ARILALNAS+FLK GGH
Sbjct: 185 LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASFFLKTGGH 244

Query: 266 FVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGVYRAPKKQ 270
           FVISIKANCIDSTV AEAVF SEV KL+ +QFKP EQVTLEPFERDHACVVG YR PKKQ
Sbjct: 245 FVISIKANCIDSTVAAEAVFQSEVKKLQQEQFKPAEQVTLEPFERDHACVVGGYRMPKKQ 304

[Close]
BLAST of HG10012297 vs. TAIR 10
Match: AT5G52490.1 (Fibrillarin family protein )

HSP 1 Score: 226.5 bits (576), Expect = 2.6e-59
Identity = 151/287 (52.61%), Postives = 175/287 (60.98%), Query Frame = 0 

Query: 47  RGRGGG--GGRG-GGGGRGMQSRGGGRGG--GRGRGGGR-----GGGMKGGSKVVVEPHR 106
           RGRGGG  GGRG   GG G   RG GRGG  GRGRG GR      GG+KGGSKV+V PHR
Sbjct: 6   RGRGGGVRGGRGLARGGEGSAVRGSGRGGESGRGRGPGRVKSESDGGIKGGSKVLVTPHR 65

Query: 107 HEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRVWNPFRSKLAAAVLGG 166
           H G+F+AK K DALVTKN+V GE +YNEKRI VQNED + +EYRVWNP RSKLA A+  G
Sbjct: 66  HAGVFVAKSKADALVTKNLVPGEIIYNEKRIFVQNEDRSTVEYRVWNPHRSKLADAITTG 125

Query: 167 VDDIWIKPGARVLYLGAASGTTVSHVSDLVGP---------------------------- 226
           VD+IWIKPG +VLYLGA+SG TVSHVSD+VGP                            
Sbjct: 126 VDNIWIKPGVKVLYLGASSGYTVSHVSDIVGPEGCVYAVEHSDICGKVLMNMAEKRTNVI 185

Query: 227 -------------------------------ARILALNASYFLKVGGHFVISIKANCIDS 265
                                          A IL+LNASYFLK GGHF+ISIKAN IDS
Sbjct: 186 PIIEDARHPAKYRMLVGMVDIIFSDVNHPEQANILSLNASYFLKSGGHFMISIKANSIDS 245

[Close]
BLAST of HG10012297 vs. TAIR 10
Match: AT5G52470.2 (fibrillarin 1 )

HSP 1 Score: 202.2 bits (513), Expect = 5.2e-52
Identity = 129/164 (78.66%), Postives = 138/164 (84.15%), Query Frame = 0 

Query: 26  ICAGRGGGGGFRGRGDGGRG-GRGRGGGGGRGGGGGRGMQSRGGGRGGGRGRGGGRGGGM 85
           +  GRGGGG   GR  GGRG G GR  GGGR G  GR    RG GRG  RGRGG   GGM
Sbjct: 5   VTGGRGGGGFRGGRDGGGRGFGGGRSFGGGRSGDRGRS-GPRGRGRGAPRGRGGPPRGGM 64

Query: 86  KGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRVWNP 145
           KGGSKV+VEPHRH G+FIAKGKEDALVTKN+V GE+VYNEKRISVQNEDGTK+EYRVWNP
Sbjct: 65  KGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRVWNP 124

Query: 146 FRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDLVGP 189
           FRSKLAAA+LGGVD+IWIKPGA+VLYLGAASGTTVSHVSDLVGP
Sbjct: 125 FRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGP 167

The following BLAST results are available for this feature:
BLAST of HG10012297 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008439295.13.3e-10979.00PREDICTED: mediator of RNA polymerase II transcription subunit 36a-like [Cucumis... [more]
XP_023552409.19.7e-10978.67mediator of RNA polymerase II transcription subunit 36a-like [Cucurbita pepo sub... [more]
XP_022141240.14.8e-10878.00mediator of RNA polymerase II transcription subunit 36a-like [Momordica charanti... [more]
XP_022984980.11.8e-10778.67probable mediator of RNA polymerase II transcription subunit 36b [Cucurbita maxi... [more]
XP_022945875.13.1e-10778.33probable mediator of RNA polymerase II transcription subunit 36b [Cucurbita mosc... [more]
BLAST of HG10012297 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q94AH99.5e-8365.59rRNA 2'-O-methyltransferase fibrillarin 2 OS=Arabidopsis thaliana OX=3702 GN=FIB... [more]
Q9FEF82.8e-8264.80rRNA 2'-O-methyltransferase fibrillarin 1 OS=Arabidopsis thaliana OX=3702 GN=FIB... [more]
Q8I1F41.1e-7059.60rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila erecta OX=7220 GN=Fib PE=3... [more]
Q9W1V32.7e-6957.84rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila melanogaster OX=7227 GN=Fi... [more]
P225091.7e-6858.88rRNA 2'-O-methyltransferase fibrillarin OS=Rattus norvegicus OX=10116 GN=Fbl PE=... [more]
BLAST of HG10012297 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3AY251.6e-10979.00mediator of RNA polymerase II transcription subunit 36a-like OS=Cucumis melo OX=... [more]
A0A6J1CHH32.3e-10878.00mediator of RNA polymerase II transcription subunit 36a-like OS=Momordica charan... [more]
A0A6J1JA278.9e-10878.67probable mediator of RNA polymerase II transcription subunit 36b OS=Cucurbita ma... [more]
A0A6J1HX741.5e-10778.33probable mediator of RNA polymerase II transcription subunit 36b OS=Cucurbita ma... [more]
A0A6J1G2801.5e-10778.33probable mediator of RNA polymerase II transcription subunit 36b OS=Cucurbita mo... [more]
BLAST of HG10012297 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G25630.16.8e-8465.59fibrillarin 2 [more]
AT5G52470.12.0e-8364.80fibrillarin 1 [more]
AT5G52490.12.6e-5952.61Fibrillarin family protein [more]
AT5G52470.25.2e-5278.66fibrillarin 1 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000692FibrillarinPRINTSPR00052FIBRILLARINcoord: 110..129
score: 64.29
coord: 165..186
score: 77.92
coord: 138..157
score: 75.71
IPR000692FibrillarinSMARTSM01206Fibrillarin_2coord: 92..261
e-value: 2.6E-94
score: 329.3
IPR000692FibrillarinPFAMPF01269Fibrillarincoord: 92..188
e-value: 1.1E-39
score: 135.9
coord: 189..260
e-value: 4.4E-25
score: 88.1
NoneNo IPR availableGENE3D3.40.50.150Vaccinia Virus protein VP39coord: 189..261
e-value: 2.3E-23
score: 84.6
NoneNo IPR availableGENE3D3.40.50.150Vaccinia Virus protein VP39coord: 143..188
e-value: 5.6E-22
score: 80.1
NoneNo IPR availableGENE3D3.30.200.20Phosphorylase Kinase; domain 1coord: 87..142
e-value: 1.6E-29
score: 103.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..89
NoneNo IPR availablePANTHERPTHR10335RRNA 2-O-METHYLTRANSFERASE FIBRILLARINcoord: 189..268
NoneNo IPR availablePANTHERPTHR10335:SF22FIBRILLARIN, S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATEDcoord: 189..268
NoneNo IPR availablePANTHERPTHR10335:SF22FIBRILLARIN, S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATEDcoord: 26..189
NoneNo IPR availablePANTHERPTHR10335RRNA 2-O-METHYLTRANSFERASE FIBRILLARINcoord: 26..189
IPR029063S-adenosyl-L-methionine-dependent methyltransferaseSUPERFAMILY53335S-adenosyl-L-methionine-dependent methyltransferasescoord: 90..259

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10012297.1HG10012297.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000494 box C/D RNA 3'-end processing
biological_process GO:0031122 cytoplasmic microtubule organization
biological_process GO:1990258 histone glutamine methylation
biological_process GO:0051321 meiotic cell cycle
biological_process GO:0007020 microtubule nucleation
biological_process GO:0000278 mitotic cell cycle
biological_process GO:0031167 rRNA methylation
biological_process GO:0051225 spindle assembly
biological_process GO:0006364 rRNA processing
cellular_component GO:0032040 small-subunit processome
cellular_component GO:0000930 gamma-tubulin complex
cellular_component GO:0005730 nucleolus
cellular_component GO:0000923 equatorial microtubule organizing center
cellular_component GO:0031428 box C/D RNP complex
molecular_function GO:0043015 gamma-tubulin binding
molecular_function GO:1990259 histone-glutamine methyltransferase activity
molecular_function GO:0051011 microtubule minus-end binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0008649 rRNA methyltransferase activity
molecular_function GO:0008168 methyltransferase activity