HG10012247 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10012247
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr01: 19336606 .. 19336896 (+)
RNA-Seq ExpressionHG10012247
SyntenyHG10012247
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAGCCTATTTGTCCTCCTACGTCCCCTGCTGTCTTTGAGTTACAAGTTGTTTCAGAAACATCATGTTGTTGATCTGGAGACACCTCCTTTTGCTTCCCAGTTTGACTGTCTTAGTCTTACTATTGGTTCTCTATTTGGGAGACGTGTGCTACAATTGTTATCCACTGAGTCTCATGACCTCAGTATGCTTCTTCAGCGCATTCAGGAGCGTACAGTTGGTATAGATAATGTGGTGACATTGACTGGATTTAGTGGTGCTTCCACATATGGAGGGGTGGAGGATTGA

mRNA sequence

ATGATGAGCCTATTTGTCCTCCTACGTCCCCTGCTGTCTTTGAGTTACAAGTTGTTTCAGAAACATCATGTTGTTGATCTGGAGACACCTCCTTTTGCTTCCCAGTTTGACTGTCTTAGTCTTACTATTGGTTCTCTATTTGGGAGACGTGTGCTACAATTGTTATCCACTGAGTCTCATGACCTCAGTATGCTTCTTCAGCGCATTCAGGAGCGTACAGTTGGTATAGATAATGTGGTGACATTGACTGGATTTAGTGGTGCTTCCACATATGGAGGGGTGGAGGATTGA

Coding sequence (CDS)

ATGATGAGCCTATTTGTCCTCCTACGTCCCCTGCTGTCTTTGAGTTACAAGTTGTTTCAGAAACATCATGTTGTTGATCTGGAGACACCTCCTTTTGCTTCCCAGTTTGACTGTCTTAGTCTTACTATTGGTTCTCTATTTGGGAGACGTGTGCTACAATTGTTATCCACTGAGTCTCATGACCTCAGTATGCTTCTTCAGCGCATTCAGGAGCGTACAGTTGGTATAGATAATGTGGTGACATTGACTGGATTTAGTGGTGCTTCCACATATGGAGGGGTGGAGGATTGA

Protein sequence

MMSLFVLLRPLLSLSYKLFQKHHVVDLETPPFASQFDCLSLTIGSLFGRRVLQLLSTESHDLSMLLQRIQERTVGIDNVVTLTGFSGASTYGGVED
Homology
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BLAST of HG10012247 vs. NCBI nr
Match: XP_038904458.1 (uncharacterized protein LOC120090822 [Benincasa hispida])

HSP 1 Score: 58.5 bits (140), Expect = 3.6e-05
Identity = 31/75 (41.33%), Postives = 42/75 (56.00%), Query Frame = 0 

Query: 11  LLSLSYKLFQKHHVVDLETPPFASQFDCLSLTIGSLFGRRVLQLLSTESHDLSMLLQRIQ 70
           L S+  KL Q H+V+DL T       D  S  + S F   +LQLLS ESHDL  L+ ++Q
Sbjct: 192 LFSIDPKLLQGHYVLDLNTTTITYHLDGSSQIMASSFSGHILQLLSVESHDLESLVHQLQ 251

Query: 71  ERTVGIDNVVTLTGF 86
           ER   +D V+ +  F
Sbjct: 252 ERKAEVDKVLLIMWF 266

The following BLAST results are available for this feature:
BLAST of HG10012247 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038904458.13.6e-0541.33uncharacterized protein LOC120090822 [Benincasa hispida][more]
BLAST of HG10012247 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10012247 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10012247 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10012247.1HG10012247.1mRNA