HG10012174 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10012174
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr01: 18402719 .. 18402919 (+)
RNA-Seq ExpressionHG10012174
SyntenyHG10012174
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGATATTCCGAGAGAGAAGGCAGGCTCACCGTGAGACTAATGTAGACGACGGCTTCTATGTGCCACGTGGATGCCAGCGTGGGTTATTCGACCGGCGTACACGGGTAAAGGAATATTCCCGGAGTCACGTGGCGCGTGGGTTTGTTGCATCGCCGAAAAGGGCATTTCTGAATCGATACGATGTAGTTTCGGGTTAA

mRNA sequence

ATGCGGATATTCCGAGAGAGAAGGCAGGCTCACCGTGAGACTAATGTAGACGACGGCTTCTATGTGCCACGTGGATGCCAGCGTGGGTTATTCGACCGGCGTACACGGGTAAAGGAATATTCCCGGAGTCACGTGGCGCGTGGGTTTGTTGCATCGCCGAAAAGGGCATTTCTGAATCGATACGATGTAGTTTCGGGTTAA

Coding sequence (CDS)

ATGCGGATATTCCGAGAGAGAAGGCAGGCTCACCGTGAGACTAATGTAGACGACGGCTTCTATGTGCCACGTGGATGCCAGCGTGGGTTATTCGACCGGCGTACACGGGTAAAGGAATATTCCCGGAGTCACGTGGCGCGTGGGTTTGTTGCATCGCCGAAAAGGGCATTTCTGAATCGATACGATGTAGTTTCGGGTTAA

Protein sequence

MRIFRERRQAHRETNVDDGFYVPRGCQRGLFDRRTRVKEYSRSHVARGFVASPKRAFLNRYDVVSG
Homology
[Close]
BLAST of HG10012174 vs. NCBI nr
Match: KAE8650868.1 (hypothetical protein Csa_002560, partial [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 3.0e-11
Identity = 38/48 (79.17%), Postives = 39/48 (81.25%), Query Frame = 0 

Query: 1  MRIFRERRQAHRETNVDDGFYVPRGCQRGLFDRRTRVKEYSRSHVARG 49
          MRI RERRQA R  NVDD  YVPRGCQRGLF R TR+KEYS SHVARG
Sbjct: 18 MRILRERRQAQRLGNVDDSLYVPRGCQRGLFGRLTRMKEYSWSHVARG 65

[Close]
BLAST of HG10012174 vs. ExPASy TrEMBL
Match: A0A0A0L981 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G638000 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.7e-13
Identity = 40/51 (78.43%), Postives = 42/51 (82.35%), Query Frame = 0 

Query: 1  MRIFRERRQAHRETNVDDGFYVPRGCQRGLFDRRTRVKEYSRSHVARGFVA 52
          MRI RERRQA R  NVDD  YVPRGCQRGLF R TR+KEYS SHVARG+VA
Sbjct: 37 MRILRERRQAQRLGNVDDSLYVPRGCQRGLFGRLTRMKEYSWSHVARGYVA 87

The following BLAST results are available for this feature:
BLAST of HG10012174 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8650868.13.0e-1179.17hypothetical protein Csa_002560, partial [Cucumis sativus][more]
BLAST of HG10012174 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10012174 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9817.7e-1378.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G638000 PE=4 SV=1[more]
BLAST of HG10012174 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10012174.1HG10012174.1mRNA