HG10012122 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTGTGGCAACTACTGCCTACTTCCAGTGCGATCTCCACCGCATTGACGGAACCGATCAATCTCTCGAAATCCGATTGGGGCGATTGATACGTCTGATCTACGAAAGCCCATTCACCAGAATTCCGTACAAGATCCGGACAGAAACTTCCTTGATTCCAGTGGAGAATGATACGCTCCCTCTCCCTCTGAGAAAGCTCGAAGATCCCCTGTTCTGCCATGCTTACATCGCTTCCTTTCTTTCCTTCTTCAAACTCCCCGCCGTAATCTCGGATCAAATCTGTCGCAACATCACGTCGTCCGTCGTTGAATTATTGGCCGCCGGAGACTACGACGCCAAGTTCTGCGTTATGGCAGAAATCAAGCGCATCGAACTGTTCTGGCGGGTGGATGTGGAAGAAGATCCGGCGAGTAAGAGTTTGAAGAAGGAGAATTTTGAAGATGGAGATTGCTCTGTTTGTCTTCAAGAACTACTGAAGGACCAGATGTGCAGAATCAAGTGCGGTCATGCCTATCATAAATCCTGCATTTTTAATTGGTTTAGACAGAGCAACACTTGTCCTTTGTGCAGAAGAAGTATTCTAAAAATTGTCAAAACGCTATAA ATGTCTGTGGCAACTACTGCCTACTTCCAGTGCGATCTCCACCGCATTGACGGAACCGATCAATCTCTCGAAATCCGATTGGGGCGATTGATACGTCTGATCTACGAAAGCCCATTCACCAGAATTCCGTACAAGATCCGGACAGAAACTTCCTTGATTCCAGTGGAGAATGATACGCTCCCTCTCCCTCTGAGAAAGCTCGAAGATCCCCTGTTCTGCCATGCTTACATCGCTTCCTTTCTTTCCTTCTTCAAACTCCCCGCCGTAATCTCGGATCAAATCTGTCGCAACATCACGTCGTCCGTCGTTGAATTATTGGCCGCCGGAGACTACGACGCCAAGTTCTGCGTTATGGCAGAAATCAAGCGCATCGAACTGTTCTGGCGGGTGGATGTGGAAGAAGATCCGGCGAGTAAGAGTTTGAAGAAGGAGAATTTTGAAGATGGAGATTGCTCTGTTTGTCTTCAAGAACTACTGAAGGACCAGATGTGCAGAATCAAGTGCGGTCATGCCTATCATAAATCCTGCATTTTTAATTGGTTTAGACAGAGCAACACTTGTCCTTTGTGCAGAAGAAGTATTCTAAAAATTGTCAAAACGCTATAA ATGTCTGTGGCAACTACTGCCTACTTCCAGTGCGATCTCCACCGCATTGACGGAACCGATCAATCTCTCGAAATCCGATTGGGGCGATTGATACGTCTGATCTACGAAAGCCCATTCACCAGAATTCCGTACAAGATCCGGACAGAAACTTCCTTGATTCCAGTGGAGAATGATACGCTCCCTCTCCCTCTGAGAAAGCTCGAAGATCCCCTGTTCTGCCATGCTTACATCGCTTCCTTTCTTTCCTTCTTCAAACTCCCCGCCGTAATCTCGGATCAAATCTGTCGCAACATCACGTCGTCCGTCGTTGAATTATTGGCCGCCGGAGACTACGACGCCAAGTTCTGCGTTATGGCAGAAATCAAGCGCATCGAACTGTTCTGGCGGGTGGATGTGGAAGAAGATCCGGCGAGTAAGAGTTTGAAGAAGGAGAATTTTGAAGATGGAGATTGCTCTGTTTGTCTTCAAGAACTACTGAAGGACCAGATGTGCAGAATCAAGTGCGGTCATGCCTATCATAAATCCTGCATTTTTAATTGGTTTAGACAGAGCAACACTTGTCCTTTGTGCAGAAGAAGTATTCTAAAAATTGTCAAAACGCTATAA MSVATTAYFQCDLHRIDGTDQSLEIRLGRLIRLIYESPFTRIPYKIRTETSLIPVENDTLPLPLRKLEDPLFCHAYIASFLSFFKLPAVISDQICRNITSSVVELLAAGDYDAKFCVMAEIKRIELFWRVDVEEDPASKSLKKENFEDGDCSVCLQELLKDQMCRIKCGHAYHKSCIFNWFRQSNTCPLCRRSILKIVKTL Homology
BLAST of HG10012122 vs. NCBI nr
Match: XP_038876865.1 (putative RING-H2 finger protein ATL53 [Benincasa hispida]) HSP 1 Score: 178.7 bits (452), Expect = 5.0e-41 Identity = 102/232 (43.97%), Postives = 128/232 (55.17%), Query Frame = 0
BLAST of HG10012122 vs. NCBI nr
Match: XP_023539480.1 (E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 172.9 bits (437), Expect = 2.7e-39 Identity = 96/227 (42.29%), Postives = 130/227 (57.27%), Query Frame = 0
BLAST of HG10012122 vs. NCBI nr
Match: KAE8650076.1 (hypothetical protein Csa_011336 [Cucumis sativus]) HSP 1 Score: 166.0 bits (419), Expect = 3.3e-37 Identity = 96/238 (40.34%), Postives = 130/238 (54.62%), Query Frame = 0
BLAST of HG10012122 vs. NCBI nr
Match: XP_038905732.1 (E3 ubiquitin-protein ligase arkadia-A-like [Benincasa hispida]) HSP 1 Score: 164.1 bits (414), Expect = 1.3e-36 Identity = 95/225 (42.22%), Postives = 129/225 (57.33%), Query Frame = 0
BLAST of HG10012122 vs. NCBI nr
Match: XP_023539471.1 (uncharacterized protein LOC111800118 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 163.7 bits (413), Expect = 1.7e-36 Identity = 93/239 (38.91%), Postives = 130/239 (54.39%), Query Frame = 0
BLAST of HG10012122 vs. ExPASy Swiss-Prot
Match: Q9XF63 (RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 2.0e-08 Identity = 24/57 (42.11%), Postives = 40/57 (70.18%), Query Frame = 0
BLAST of HG10012122 vs. ExPASy Swiss-Prot
Match: Q9FG21 (Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 PE=3 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 1.7e-07 Identity = 29/74 (39.19%), Postives = 41/74 (55.41%), Query Frame = 0
BLAST of HG10012122 vs. ExPASy Swiss-Prot
Match: Q8LFY8 (RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2) HSP 1 Score: 55.8 bits (133), Expect = 6.4e-07 Identity = 26/56 (46.43%), Postives = 30/56 (53.57%), Query Frame = 0
BLAST of HG10012122 vs. ExPASy Swiss-Prot
Match: Q9LRB7 (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 1.4e-06 Identity = 25/64 (39.06%), Postives = 37/64 (57.81%), Query Frame = 0
BLAST of HG10012122 vs. ExPASy Swiss-Prot
Match: Q940Q4 (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2) HSP 1 Score: 54.3 bits (129), Expect = 1.8e-06 Identity = 23/48 (47.92%), Postives = 29/48 (60.42%), Query Frame = 0
BLAST of HG10012122 vs. ExPASy TrEMBL
Match: A0A6J1G7L1 (NEP1-interacting protein-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111451601 PE=4 SV=1) HSP 1 Score: 156.0 bits (393), Expect = 1.7e-34 Identity = 87/215 (40.47%), Postives = 122/215 (56.74%), Query Frame = 0
BLAST of HG10012122 vs. ExPASy TrEMBL
Match: A0A6J1L191 (E3 ubiquitin-protein ligase At1g63170-like OS=Cucurbita maxima OX=3661 GN=LOC111499501 PE=4 SV=1) HSP 1 Score: 152.9 bits (385), Expect = 1.4e-33 Identity = 87/220 (39.55%), Postives = 123/220 (55.91%), Query Frame = 0
BLAST of HG10012122 vs. ExPASy TrEMBL
Match: A0A6J1G7R8 (E3 ubiquitin-protein ligase MBR2-like OS=Cucurbita moschata OX=3662 GN=LOC111451612 PE=4 SV=1) HSP 1 Score: 152.9 bits (385), Expect = 1.4e-33 Identity = 86/217 (39.63%), Postives = 122/217 (56.22%), Query Frame = 0
BLAST of HG10012122 vs. ExPASy TrEMBL
Match: A0A6J1L186 (NEP1-interacting protein-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111499495 PE=4 SV=1) HSP 1 Score: 147.5 bits (371), Expect = 5.9e-32 Identity = 84/214 (39.25%), Postives = 117/214 (54.67%), Query Frame = 0
BLAST of HG10012122 vs. ExPASy TrEMBL
Match: A0A5D3BYE9 (RING finger protein 165-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00110 PE=4 SV=1) HSP 1 Score: 130.2 bits (326), Expect = 9.8e-27 Identity = 75/213 (35.21%), Postives = 114/213 (53.52%), Query Frame = 0
BLAST of HG10012122 vs. TAIR 10
Match: AT4G12140.1 (RING/U-box superfamily protein ) HSP 1 Score: 61.2 bits (147), Expect = 1.1e-09 Identity = 24/57 (42.11%), Postives = 34/57 (59.65%), Query Frame = 0
BLAST of HG10012122 vs. TAIR 10
Match: AT1G72310.1 (RING/U-box superfamily protein ) HSP 1 Score: 60.8 bits (146), Expect = 1.4e-09 Identity = 24/57 (42.11%), Postives = 40/57 (70.18%), Query Frame = 0
BLAST of HG10012122 vs. TAIR 10
Match: AT4G12210.1 (RING/U-box superfamily protein ) HSP 1 Score: 60.8 bits (146), Expect = 1.4e-09 Identity = 28/76 (36.84%), Postives = 38/76 (50.00%), Query Frame = 0
BLAST of HG10012122 vs. TAIR 10
Match: AT5G41430.1 (RING/U-box superfamily protein ) HSP 1 Score: 60.1 bits (144), Expect = 2.4e-09 Identity = 28/66 (42.42%), Postives = 44/66 (66.67%), Query Frame = 0
BLAST of HG10012122 vs. TAIR 10
Match: AT3G30460.1 (RING/U-box superfamily protein ) HSP 1 Score: 59.7 bits (143), Expect = 3.1e-09 Identity = 31/89 (34.83%), Postives = 44/89 (49.44%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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