HG10012099 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10012099
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Transcription initiation factor IIF subunit alpha
Location	Chr01: 17632537 .. 17636874 (-)
RNA-Seq Expression	HG10012099
Synteny	HG10012099

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTTCGATTTGCTGCTGAAGCCATCGTGTAGTGGATGCGGATCCACGACGGAGTTGTATGGGAGCAATTGCAAGCACATGACATTGTGCTTGACCTGTGGAAAAACTATGGCTGAGAACAAAGGCAAATGTTATGACTGTGGCGCTACTGTAACTCGCTTAATAAGAGTTCGTCCTTCCTTTACCTCGTCTTTCTTAAAGAGCATGATGATTTAAATGTGTTAAATTTGTACTCATGTGATTAGGGCTTCTTATTTATGACAGATTTAAGAATTTTCATAATACCGTGGATTGAACTCTGTCTGCCTTCTCTTTCTGAGAGTGCATGATGAACTATATTTTAGGAATACAATGTTCGAGCAAGTGCAAGTAGCGACAAGAACTACTTCATCGGTAGGTTCATGAGTGGGCTGCCGAACTTTTCGAAGAAGAGAAATGCTGAGAATAAATGGTCTCTTTACAAGGATGGTCTACAAGGACGCCAACTTACGGATGCCCTTCGGGTACTTACTTGACTTTGATTTTGCTTCCTTTCTTATGTTTGTCTTGGATAGTTTATTGTTTTGGAAGCCTAGATACTGGTTACTTGATATCTATTTTTCTTTTTAGACGCTATAACTGTTGAGAGTAACAAGGGCAAGAGTAATTGATGCTATCCTTTAGTAAAATTGAAAGGGAACACATTCTTTAATGCTGATAAATGGTCCGGTCCCTTATAGACTTGGAGTCTCATACACTTTCTTTTTTGTCACTTCTTGGGCTTTCTGCCACAGTAGAGTACATAAACTTACTCTTCGTATTAGTTGGAATGTCTCTAATTTTTTACGACTTATGTATATGTTGGACTATGGAATTATATGTTTTGTGTTCAATGTTTGATTGTTACCTTGTGTTAACCATAACTCAGCTTTGACCTTGGAGCTGCATTTGGTTAATATCTTCTTGCATTTATTTTTTCTTGTCTGCTCTTTCATTTGGTTTGTTTTTTTGTGGCTTATTGCTTAGCTTTTTTTTTTTTTTTCTTTTTTCTTTTTTAAAATGGTTACTTGCACTCTTGTTCTGCTTGGCCCTGATTAATTATGATTCTGTTAACATAGGAAAAGTATAAGAATAGACCCTGGCTGTTGGAAGATGAAACGGGCCAATTTCAATTCCAAGGTCATCTTGAGGGCTCACAATCAGCAACATACTACTTGCTTGTATTGCAAGGAAAGGAATTTACTGCCATTCCTGCAGGTTCTTGGTATGGTTTATCTTTGAGTTAGTTTGCCATGGATCAAGTTATAGTCCTTTATTTGTTTGGCATAGTATTCTTCATACATGGTCATTATATTTTCCAATTCTTGAAGGCTTCTATGTTGTCCGGATGAAAAATTTGAAGTCATTCATGGTGGTAGCAGAATGGCTGACCTCAATTTTCAGGTACAACTTCAACAAAGTGGCACAGTATAAGCACTTACTTTGGTGGAGGCAGAAGAAAAAATGAAGAATCGAAAGAAGACAGCAGATGGATATGAAAGATGGATGATGAAAGCTGCAAGTAATGGTCCTGCTGCATTTGGTGAGGTTGAGAAGTTTGATGACAAAGAAAGTGTTGGTACTAGTGGTAGGGGACGGAGAAAACCTACTGGTGATGAGAATGAAGGCAATGCCTCGGATAGGGGAGAAGAAGATGAAGAAGAGGAGGCACAGAGGAAGAACAGATTGGGACTCAATAAAAAGGGTGGCGGCGATGACGATGATGAGGAAGGTCCTAGGGGTGGTGACCATGACTTGGATGATGATGATATTGAGAAAGGTTATATTTTCCCTTTAAAGAAAAACAAGATTTTGTTTAGGTCAAGTGCTTTTCTACGTCATTGTCATCTCTATAGAATGCCACTTGCCGTTTGTTGACTGTTTATGGGCTAGGCCATCACCATCATATGGGAACCAAATGCATCAAATGAGTGGTTTAGATTTGGGGATAGCATTATATTAGCAGATACTTTTGTTCTCCAGGAAGTTTCAAATTTTCACCATGTTTTTTAATAATGCGCTTGGCAAGGAAACTCTTTCTTGTATCCATGCATGTGAAATTTGGCTATTAATACGATGAGCATTGTGGCATTGTTCCTCTATGTTAACCTGTCTGTCCAACTTTCTAGGAGACGATTGGGAGCACGAAGAGATTTTTACTGATGATGATGAAACTACTGCTCCGGATCGTGAAGAAAGGGAGGATTTAGCCCCTGAAGTTCCTGCACCTCCAGAAATCAAGCAGGTTGTCTAGCCCTTGGGAAAAAAGAAACTTTCACTGATACACATCACTTCATCCTTTTACTAGAAGTGATTCTATATATTTAACAGTTGAAGTAACTGTATACGTTTGTCTCCAAAGGTGTTGGAAAAGGTGGTAGGAAATGAAATATTAGAAAGTTCTGTAAAAGGAACAATAAAAATGAAAAATGAAAAGAAAAGACATGCTAATGCAGGATGGGTGATGGAAAATAGGAAAGGTGGAGAGGAGATTATGAATGACGATTATTTTTTTCTGAAAGTAGTCCCTATGAGTCTATGACCACCAGTTGCATGAAAATACGTACAGGGTGTGATTAAATGAAAACAGTATATTGATTTCCATTGACCTTTAAAACCATCTCGAGTTCTGGTTGGCGTCTTGGATTGTCTGAAGCTTTCTTTTGAATATATAGTGTAAGCCTTTCAAGTCAAAGATATAACATATCAGATAAAAAATGGCTTGTTTGTATGACTGAGCTTACTAGTTCAGTAAATTATTGTCTCACATTGCAGGATGAAGACGATGAGGATGAAGAAAATGAAGGGGAGGGGGGGCTGAGCAAATCTGGGAAAGAGTTGAAGAAATTGCTTAGGCGTACTGGGGGGCTTACTGATTCAGATGGAGAGGATGATGACGATGATGACGATGTAAGAGGCTCTTGTCATTTCTCTTGACTGACAGCATGATCCAAAATTCTAAATTATAGTGACCCACGAGCAGTCTTTTGAATGGACTTTGTATGAAGTGCATTCGATCATTTGTCATTGTATTTTTATGCAGTCTGAAGCATTATTTGAATGTGTTATGCTGTTTGCAAATTCCTTTTTTTGTATATAGTAAATGACAGTATCTTTTGAGCAAAGGATGTCATTAGTGAACCACCACATTGAGTTGGCCTAGTGGTCAATAAGAGGTATGTAAATAATAAAAGGCTAGGGAGATTGAATTCAAGCTGTAGGGCCACTATTTAGAGTTTTAAGTTACTTTGTCAACCGAATGTTGTAGAGTGTTTCATGAAAATAGTCAGGGTGTGCCAATTTTTTTCAAAAAGATAAGCCTATTAGCAACAGAAGATTGGTTAGCAGTCCATGACGCCTGGATTTTCTTGGAATCCTAACTAATCTGATTGTATAAGTATTTATATATAAGTCTGCTAATTGTGATACTGCCTGAATTTTTTATCCTATTAAGTGGTTTGTACCTTTTATGTATTCAGGCGGATGAGGATACTGGTGGCACTCCCGTCTTACCTTCGAAGCAGAAGGATACAGTTAAAGAAGAAGCTGCAGCCAGCAGTCCCTCAAAACCAACGCCTTCTGGATCTGCTAAGGGAACCCCTTCTACTGCAAAGACAGCAAAGGGGAAGAGGAAAAATGGTGAGGATGTGAAACCATCCAGTGCACCTCCAAAGAAAATGAAAACAGAGACGGTGTGTCATGCTATCTTATGGTTTAAGTTCCGGAAAAGTACTTCTATTTGTATTAGAAGGTTATGCGGCAAAGCCATTCTTTGTTGTAAACTAATATTTCTTGGGACATTCAGGAATCGAAGTCCACAGATGAAGGTGTACCTACTTCTAAAAGTACGGCCTCAAAAGGTGCACCAGCATCGGTCAAAACTGAACCAGCAACGCATTCTGGACCCGTTACTGAGGAGGAAATTAGGGCTGTTTTGCGGCAAAGGACACCTGTAACTACACAGGATCTTGTTGCAAAATTCAAAGCAAGACTACGAACTCCAGAGGTATTGTTGTTACGTCTTCATGGCATGTTTTTACATAAACTGGTCTTACTTTCGATGTGTCACCATGTTATTGAAACAAGTTTCACTTTTTGGTTGAGAAGCGGGCAGTTTTTTGCAAGTGAAATGTGGCTAGCTTAAAACATGAAAGGATAATTCAGAAACTTGATAGACCGGGACAATTTTCTAATGCCTCATATCATCATACTATGCAGGACAAGAATGCTTTTGCAGAAATACTTAGGAGAATTTCAAGGATTCAAAAGACGAACGGAGGACCGAGTTACGTTGTGCTGAGAAAACCTGAAGACTAG

mRNA sequence

ATGTCGTTCGATTTGCTGCTGAAGCCATCGTGTAGTGGATGCGGATCCACGACGGAGTTGTATGGGAGCAATTGCAAGCACATGACATTGTGCTTGACCTGTGGAAAAACTATGGCTGAGAACAAAGGCAAATGTTATGACTGTGGCGCTACTGAATACAATGTTCGAGCAAGTGCAAGTAGCGACAAGAACTACTTCATCGGTAGGTTCATGAGTGGGCTGCCGAACTTTTCGAAGAAGAGAAATGCTGAGAATAAATGGTCTCTTTACAAGGATGGTCTACAAGGACGCCAACTTACGGATGCCCTTCGGGAAAAGTATAAGAATAGACCCTGGCTGTTGGAAGATGAAACGGGCCAATTTCAATTCCAAGGTCATCTTGAGGGCTCACAATCAGCAACATACTACTTGCTTGTATTGCAAGGAAAGGAATTTACTGCCATTCCTGCAGAAGAAAAAATGAAGAATCGAAAGAAGACAGCAGATGGATATGAAAGATGGATGATGAAAGCTGCAAGTAATGGTCCTGCTGCATTTGGTGAGGTTGAGAAGTTTGATGACAAAGAAAGTGTTGGTACTAGTGGTAGGGGACGGAGAAAACCTACTGGTGATGAGAATGAAGGCAATGCCTCGGATAGGGGAGAAGAAGATGAAGAAGAGGAGGCACAGAGGAAGAACAGATTGGGACTCAATAAAAAGGGAGACGATTGGGAGCACGAAGAGATTTTTACTGATGATGATGAAACTACTGCTCCGGATCGTGAAGAAAGGGAGGATTTAGCCCCTGAAGTTCCTGCACCTCCAGAAATCAAGCAGGATGAAGACGATGAGGATGAAGAAAATGAAGGGGAGGGGGGGCTGAGCAAATCTGGGAAAGAGTTGAAGAAATTGCTTAGGCGTACTGGGGGGCTTACTGATTCAGATGGAGAGGATGATGACGATGATGACGATGCGGATGAGGATACTGGTGGCACTCCCGTCTTACCTTCGAAGCAGAAGGATACAGTTAAAGAAGAAGCTGCAGCCAGCAGTCCCTCAAAACCAACGCCTTCTGGATCTGCTAAGGGAACCCCTTCTACTGCAAAGACAGCAAAGGGGAAGAGGAAAAATGGTGAGGATGTGAAACCATCCAGTGCACCTCCAAAGAAAATGAAAACAGAGACGGAATCGAAGTCCACAGATGAAGGTGTACCTACTTCTAAAAGTACGGCCTCAAAAGGTGCACCAGCATCGGTCAAAACTGAACCAGCAACGCATTCTGGACCCGTTACTGAGGAGGAAATTAGGGCTGTTTTGCGGCAAAGGACACCTGTAACTACACAGGATCTTGTTGCAAAATTCAAAGCAAGACTACGAACTCCAGAGGACAAGAATGCTTTTGCAGAAATACTTAGGAGAATTTCAAGGATTCAAAAGACGAACGGAGGACCGAGTTACGTTGTGCTGAGAAAACCTGAAGACTAG

Coding sequence (CDS)

ATGTCGTTCGATTTGCTGCTGAAGCCATCGTGTAGTGGATGCGGATCCACGACGGAGTTGTATGGGAGCAATTGCAAGCACATGACATTGTGCTTGACCTGTGGAAAAACTATGGCTGAGAACAAAGGCAAATGTTATGACTGTGGCGCTACTGAATACAATGTTCGAGCAAGTGCAAGTAGCGACAAGAACTACTTCATCGGTAGGTTCATGAGTGGGCTGCCGAACTTTTCGAAGAAGAGAAATGCTGAGAATAAATGGTCTCTTTACAAGGATGGTCTACAAGGACGCCAACTTACGGATGCCCTTCGGGAAAAGTATAAGAATAGACCCTGGCTGTTGGAAGATGAAACGGGCCAATTTCAATTCCAAGGTCATCTTGAGGGCTCACAATCAGCAACATACTACTTGCTTGTATTGCAAGGAAAGGAATTTACTGCCATTCCTGCAGAAGAAAAAATGAAGAATCGAAAGAAGACAGCAGATGGATATGAAAGATGGATGATGAAAGCTGCAAGTAATGGTCCTGCTGCATTTGGTGAGGTTGAGAAGTTTGATGACAAAGAAAGTGTTGGTACTAGTGGTAGGGGACGGAGAAAACCTACTGGTGATGAGAATGAAGGCAATGCCTCGGATAGGGGAGAAGAAGATGAAGAAGAGGAGGCACAGAGGAAGAACAGATTGGGACTCAATAAAAAGGGAGACGATTGGGAGCACGAAGAGATTTTTACTGATGATGATGAAACTACTGCTCCGGATCGTGAAGAAAGGGAGGATTTAGCCCCTGAAGTTCCTGCACCTCCAGAAATCAAGCAGGATGAAGACGATGAGGATGAAGAAAATGAAGGGGAGGGGGGGCTGAGCAAATCTGGGAAAGAGTTGAAGAAATTGCTTAGGCGTACTGGGGGGCTTACTGATTCAGATGGAGAGGATGATGACGATGATGACGATGCGGATGAGGATACTGGTGGCACTCCCGTCTTACCTTCGAAGCAGAAGGATACAGTTAAAGAAGAAGCTGCAGCCAGCAGTCCCTCAAAACCAACGCCTTCTGGATCTGCTAAGGGAACCCCTTCTACTGCAAAGACAGCAAAGGGGAAGAGGAAAAATGGTGAGGATGTGAAACCATCCAGTGCACCTCCAAAGAAAATGAAAACAGAGACGGAATCGAAGTCCACAGATGAAGGTGTACCTACTTCTAAAAGTACGGCCTCAAAAGGTGCACCAGCATCGGTCAAAACTGAACCAGCAACGCATTCTGGACCCGTTACTGAGGAGGAAATTAGGGCTGTTTTGCGGCAAAGGACACCTGTAACTACACAGGATCTTGTTGCAAAATTCAAAGCAAGACTACGAACTCCAGAGGACAAGAATGCTTTTGCAGAAATACTTAGGAGAATTTCAAGGATTCAAAAGACGAACGGAGGACCGAGTTACGTTGTGCTGAGAAAACCTGAAGACTAG

Protein sequence

MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGATEYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGLQGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAEEKMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNKKGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

Homology

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BLAST of HG10012099 vs. NCBI nr
Match: XP_038888042.1 (transcription initiation factor IIF subunit alpha isoform X1 [Benincasa hispida])

HSP 1 Score: 874.0 bits (2257), Expect = 6.0e-250
Identity = 477/538 (88.66%), Postives = 480/538 (89.22%), Query Frame = 0


Query: 1   MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYN 60
           MSFDL+LKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT      EYN
Sbjct: 1   MSFDLMLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYN 60

Query: 61  VRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGLQGRQLTDALREKYKNRPWLL 120
           VRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGLQGRQLTDALREKYKNRPWLL
Sbjct: 61  VRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGLQGRQLTDALREKYKNRPWLL 120

Query: 121 EDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKM 180
           EDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP                    AEEKM
Sbjct: 121 EDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKM 180

Query: 181 KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRG 240
           KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKE VGTSGRGRRKPTGDENEGN SDRG
Sbjct: 181 KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKEGVGTSGRGRRKPTGDENEGNVSDRG 240

Query: 241 EEDEEEEAQRKNRLGLNK-------------------------KGDDWEHEEIFTDDDET 300
           EEDEEEEAQRKNRLGLNK                         KGDDWEHEEIFTDDDET
Sbjct: 241 EEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGDHDLDDDDIEKGDDWEHEEIFTDDDET 300

Query: 301 TAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDG 360
           TAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGL DSDG
Sbjct: 301 TAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDG 360

Query: 361 EDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRK 420
           EDDDDDDD DEDTGGTPVLPSKQKDTVKEEAAA+SPSKPTPSGSAKGTPSTAKTAKGKRK
Sbjct: 361 EDDDDDDDVDEDTGGTPVLPSKQKDTVKEEAAANSPSKPTPSGSAKGTPSTAKTAKGKRK 420

Query: 421 NGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIR 480
           NGEDVKPSSAPPKKMKTETESKSTDE V TSKSTASKGAPA VKTEPA+HSGPVTEEEIR
Sbjct: 421 NGEDVKPSSAPPKKMKTETESKSTDE-VSTSKSTASKGAPALVKTEPASHSGPVTEEEIR 480

Query: 481 AVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED 488
           AVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Sbjct: 481 AVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED 537

[Close]

BLAST of HG10012099 vs. NCBI nr
Match: XP_004152016.1 (transcription initiation factor IIF subunit alpha isoform X1 [Cucumis sativus] >XP_011651639.1 transcription initiation factor IIF subunit alpha isoform X1 [Cucumis sativus] >KGN58337.1 hypothetical protein Csa_017587 [Cucumis sativus])

HSP 1 Score: 868.6 bits (2243), Expect = 2.5e-248
Identity = 471/538 (87.55%), Postives = 481/538 (89.41%), Query Frame = 0


Query: 1   MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYN 60
           MSFDLLLK SCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT      EYN
Sbjct: 1   MSFDLLLKQSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYN 60

Query: 61  VRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGLQGRQLTDALREKYKNRPWLL 120
           VRASAS+DKNYFIGRFMSGLPNFSKKRNAENKWSLYK+GLQGRQL+DALREKYKNRPWLL
Sbjct: 61  VRASASNDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGLQGRQLSDALREKYKNRPWLL 120

Query: 121 EDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKM 180
           EDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP                    AEEKM
Sbjct: 121 EDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKM 180

Query: 181 KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRG 240
           KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKE+VGTSGRGRRK TGDENEGN SDRG
Sbjct: 181 KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKETVGTSGRGRRKTTGDENEGNVSDRG 240

Query: 241 EEDEEEEAQRKNRLGLNK-------------------------KGDDWEHEEIFTDDDET 300
           EEDEEEEA RKNRLGL+K                         KGDDWEHEEIFTDDDET
Sbjct: 241 EEDEEEEAARKNRLGLSKKGGGDDDDEEGPRGGDHDLDDDDIEKGDDWEHEEIFTDDDET 300

Query: 301 TAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDG 360
           TAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSKSGKELKKLLRRTGGL DSDG
Sbjct: 301 TAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDG 360

Query: 361 EDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRK 420
           EDDDDDDD DEDTGGTPVLPSKQKDTVKEEAAA+SPSKPTPSGSAKGTPSTAKTAKGKRK
Sbjct: 361 EDDDDDDDVDEDTGGTPVLPSKQKDTVKEEAAANSPSKPTPSGSAKGTPSTAKTAKGKRK 420

Query: 421 NGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIR 480
           NGEDVKPSSAPPKKMKTETESK+TDEGVPTSKSTASKGAPASVKTEP++HSGPVTEEEIR
Sbjct: 421 NGEDVKPSSAPPKKMKTETESKATDEGVPTSKSTASKGAPASVKTEPSSHSGPVTEEEIR 480

Query: 481 AVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED 488
           AVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Sbjct: 481 AVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED 538

[Close]

BLAST of HG10012099 vs. NCBI nr
Match: XP_016900419.1 (PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor IIF subunit alpha [Cucumis melo])

HSP 1 Score: 865.1 bits (2234), Expect = 2.8e-247
Identity = 470/538 (87.36%), Postives = 478/538 (88.85%), Query Frame = 0


Query: 1   MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYN 60
           MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT      EYN
Sbjct: 1   MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYN 60

Query: 61  VRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGLQGRQLTDALREKYKNRPWLL 120
           VRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYK+GLQGRQLTDALREKYKNRPWLL
Sbjct: 61  VRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGLQGRQLTDALREKYKNRPWLL 120

Query: 121 EDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKM 180
           EDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP                    AE KM
Sbjct: 121 EDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEXKM 180

Query: 181 KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRG 240
           KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKE+VGTSGRGRRK TGDENEGN SDRG
Sbjct: 181 KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKETVGTSGRGRRKTTGDENEGNVSDRG 240

Query: 241 EEDEEEEAQRKNRLGLNK-------------------------KGDDWEHEEIFTDDDET 300
           EEDEEEEA RKNRLGL+K                         KGDDWEHEEIFTDDDET
Sbjct: 241 EEDEEEEAARKNRLGLSKKGGGDDDDEEGPRGGDHDLDDDDIEKGDDWEHEEIFTDDDET 300

Query: 301 TAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDG 360
           TAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSKSGKELKKLLRRTGGL DSDG
Sbjct: 301 TAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDG 360

Query: 361 EDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRK 420
           EDD+DDDD DEDTGGTPVLPSKQKDTVKEEAAA+SPSKPTPSGSAKGTPSTAKTAKGKRK
Sbjct: 361 EDDEDDDDVDEDTGGTPVLPSKQKDTVKEEAAANSPSKPTPSGSAKGTPSTAKTAKGKRK 420

Query: 421 NGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIR 480
           NGEDVKPSSAPPKKMKTETE K TDEGVPTSKSTASKGAPASVKTEP++HSGPVTEEEIR
Sbjct: 421 NGEDVKPSSAPPKKMKTETELKPTDEGVPTSKSTASKGAPASVKTEPSSHSGPVTEEEIR 480

Query: 481 AVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED 488
           AVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQK NGGPSYVVLRKPED
Sbjct: 481 AVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKINGGPSYVVLRKPED 538

[Close]

BLAST of HG10012099 vs. NCBI nr
Match: XP_022931161.1 (transcription initiation factor IIF subunit alpha-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 836.3 bits (2159), Expect = 1.4e-238
Identity = 459/539 (85.16%), Postives = 472/539 (87.57%), Query Frame = 0


Query: 1   MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYN 60
           MS DLLLKPSCSGCGSTTELYGSNCKHMTLCL CGKTMAENKGKCYDCGAT      EYN
Sbjct: 1   MSLDLLLKPSCSGCGSTTELYGSNCKHMTLCLRCGKTMAENKGKCYDCGATVTRLIREYN 60

Query: 61  VRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGLQGRQLTDALREKYKNRPWLL 120
           VRAS+SSDKNYFIGRFMSGLPNFSKKRNAENKWSLYK+GLQGRQLTDALREKYKNRPWLL
Sbjct: 61  VRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGLQGRQLTDALREKYKNRPWLL 120

Query: 121 EDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKM 180
           EDETGQ QFQGHLEGSQSATYYLLVLQGKEFTAIP                    AEEKM
Sbjct: 121 EDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKM 180

Query: 181 KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRG 240
           KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDK+SVG +GRGRRKPT DENEGN SDRG
Sbjct: 181 KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRG 240

Query: 241 EEDEEEEAQRKNRLGLNK-------------------------KGDDWEHEEIFTDDDET 300
           EEDEEEEA RKNRLGLNK                         KGDDWEHEEIFTDDDET
Sbjct: 241 EEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEKGDDWEHEEIFTDDDET 300

Query: 301 TAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDG 360
           TAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSKSGKELKKLLRRTGGL DSDG
Sbjct: 301 TAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDG 360

Query: 361 -EDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKR 420
            E+DDDDDDA+E++GGTPV PSKQKD VKEEAAA+SPSKP PSGSAKGTPSTAKTAKGKR
Sbjct: 361 EEEDDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKR 420

Query: 421 KNGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEI 480
           KNGEDVKPSSAPPKKMKTETESKSTDEGV TS+STASKGA ASVKTEPA+ SGPVTEEEI
Sbjct: 421 KNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEEI 480

Query: 481 RAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED 488
           RAVLRQRTPVTTQDLVAKFKARLR+ EDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Sbjct: 481 RAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED 539

[Close]

BLAST of HG10012099 vs. NCBI nr
Match: KAG6606328.1 (Transcription initiation factor IIF subunit alpha, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 834.7 bits (2155), Expect = 4.0e-238
Identity = 458/539 (84.97%), Postives = 472/539 (87.57%), Query Frame = 0


Query: 1   MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYN 60
           MS DLLLKPSCSGCGSTTELYGSNCKHMTLCL CGKTMAENKGKCYDCGAT      EYN
Sbjct: 27  MSLDLLLKPSCSGCGSTTELYGSNCKHMTLCLRCGKTMAENKGKCYDCGATVTRLIREYN 86

Query: 61  VRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGLQGRQLTDALREKYKNRPWLL 120
           VRAS+SSDKNYFIGRFMSGLPNFSKKRNAENKWSLYK+GLQGRQLTDALREKYKNRPWLL
Sbjct: 87  VRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGLQGRQLTDALREKYKNRPWLL 146

Query: 121 EDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKM 180
           EDETGQ QFQGHLEGSQSATYYLLVLQGKEFTAIP                    AEEKM
Sbjct: 147 EDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKM 206

Query: 181 KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRG 240
           KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDK+SVG +GRGRRKPT DENEGN SDRG
Sbjct: 207 KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRG 266

Query: 241 EEDEEEEAQRKNRLGLN-------------------------KKGDDWEHEEIFTDDDET 300
           EEDEEEEA RKNRLGLN                         KKGDDWEHEEIFTDDDET
Sbjct: 267 EEDEEEEAARKNRLGLNKKGGGDDDDEEGHRGGDHDLDDDDIKKGDDWEHEEIFTDDDET 326

Query: 301 TAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDG 360
           TAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSKSGKELKKLLRRTGGL DSDG
Sbjct: 327 TAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDG 386

Query: 361 EDD-DDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKR 420
           E++ DDDDDA+E++GGTPV PSKQKD VKEEAAA+SPSKP PSGSAKGTPSTAKTAKGKR
Sbjct: 387 EEENDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKR 446

Query: 421 KNGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEI 480
           KNGEDVKPSSAPPKKMKTETESKSTDEGV TS+STASKGA ASVKTEPA+ SGPVTEEEI
Sbjct: 447 KNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEEI 506

Query: 481 RAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED 488
           RAVLRQRTPVTTQDLVAKFKARLR+ EDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Sbjct: 507 RAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED 565

[Close]

BLAST of HG10012099 vs. ExPASy Swiss-Prot
Match: Q9SU25 (Transcription initiation factor IIF subunit alpha OS=Arabidopsis thaliana OX=3702 GN=RAP74 PE=1 SV=1)

HSP 1 Score: 534.6 bits (1376), Expect = 1.1e-150
Identity = 327/549 (59.56%), Postives = 391/549 (71.22%), Query Frame = 0


Query: 1   MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYN 60
           MS  L L  SC GCGS ++LYGS+C+HMTLCL CG+TMA+NK KC++CG        EYN
Sbjct: 1   MSNCLQLNTSCVGCGSQSDLYGSSCRHMTLCLKCGRTMAQNKSKCHECGTVVTRLIREYN 60

Query: 61  VRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGLQGRQLTDALREKYKNRPWLL 120
           VRA+A +DKNYFIGRF++GLPNF  K+ +ENKWSL KD  QGRQ TDA REK KN+PW+L
Sbjct: 61  VRAAAPTDKNYFIGRFVTGLPNF--KKGSENKWSLRKDIPQGRQFTDAQREKLKNKPWIL 120

Query: 121 EDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKM 180
           EDETGQFQ+QGHLEGSQSATYYLLV+Q KEF AIP                    AEEKM
Sbjct: 121 EDETGQFQYQGHLEGSQSATYYLLVMQNKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM 180

Query: 181 KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTS---GRGRRKPT-GDENEGNA 240
           KNR+KTADGY+RWMMKAA+NGPA FGEV+  ++KES GTS   GRGR+K + GDE EGN 
Sbjct: 181 KNRRKTADGYQRWMMKAANNGPALFGEVD--NEKESGGTSGGGGRGRKKSSGGDEEEGNV 240

Query: 241 SDRGEEDEEEEAQRKNRLGLNK------------------------KGDDWEHEEIFTDD 300
           SDRG+EDEEEEA RK+RLGLN+                        KGDDWEHEEIFTDD
Sbjct: 241 SDRGDEDEEEEASRKSRLGLNRKSNDDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDD 300

Query: 301 DETTAPDREERED-LAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLT 360
           DE    D EERED LAPE+PAPPEIKQDEDDE+ E E EGGLSKSGKELKKLL +  GL 
Sbjct: 301 DEAVGNDPEEREDLLAPEIPAPPEIKQDEDDEENEEE-EGGLSKSGKELKKLLGKANGLD 360

Query: 361 DSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAK 420
           +SD +DDDD DD +E   GT V  SKQK+  KEE   ++P+KP PSG  +GTP  AK +K
Sbjct: 361 ESDEDDDDDSDDEEETNYGT-VTNSKQKEAAKEEPVDNAPAKPAPSGPPRGTP-PAKPSK 420

Query: 421 GKRK--NGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPAT----- 480
           GKRK  +G+  KPSS+  KK+KTE + KS+ +    +  + S     +VK EPA+     
Sbjct: 421 GKRKLNDGDSKKPSSSVQKKVKTENDPKSSLKEERANTVSKSNTPTKAVKAEPASAPASS 480

Query: 481 ---HSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNG 485
               +GPVTE+EIRAVL ++  VTTQDLV++FKARL+T EDKNAFA ILR+IS+IQK  G
Sbjct: 481 SSAATGPVTEDEIRAVLMEKKQVTTQDLVSRFKARLKTKEDKNAFANILRKISKIQKNAG 540

[Close]

BLAST of HG10012099 vs. ExPASy Swiss-Prot
Match: Q54WV4 (General transcription factor IIF subunit 1 OS=Dictyostelium discoideum OX=44689 GN=gtf2f1 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.4e-07
Identity = 103/415 (24.82%), Postives = 182/415 (43.86%), Query Frame = 0


Query: 108 KNRPWLLEDETGQFQFQGHLEGSQ-SATYYLLVLQG------------------KEFTAI 167
           K  PW LED  G   +QG++EG+Q S+ Y+L + Q                   KEF ++
Sbjct: 146 KTIPWKLEDSEGNNTYQGNVEGNQASSNYFLFMFQSDGSIKAVPCNDWYNFRPKKEFQSL 205

Query: 168 PAEEK---MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDE 227
             EE    MK + +  D +   + K      +  G  E    K          R    D 
Sbjct: 206 TTEEAEDFMKKKNQEWDVFTSRLQKKTDPSGSGSGGSESSGKKSIEELEEAEHRNRNEDP 265

Query: 228 NEGNASDRGEEDEEEEAQRKNR--LGLNKKGDDWEHEEIFTDDDETTAPDREEREDLAPE 287
           N    ++  ++ ++  A+R+ R   G  + GD  + E  F DDD+ T  D    + L  E
Sbjct: 266 NRYKTTNEEKKKKKAPARRREREDEGNGEDGDAPDFESKFDDDDDDTYMD---GDGLTGE 325

Query: 288 VPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDGE--DDDDDDDADED 347
                +I++DE++ED +      L++ G E+KK++++     DS+ +  DDDD  D +  
Sbjct: 326 --DENQIEEDEEEEDVD------LTEGGLEMKKMIKKQQQQNDSEDDLADDDDKKDNNGG 385

Query: 348 TGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPST-----------AKTAKGKRKN 407
           TGG       + D   ++   S+  K     +A GT ++           +K++K  +K 
Sbjct: 386 TGGGDDEDDDEDDEDPDQDDLSNLPKVFGKSNADGTTNSSVKKEDDGGKDSKSSKKSKKK 445

Query: 408 GEDVKPSSAPPKKMKTETESKSTD------EGVPTSKSTASKGAPASVKTEPA----THS 467
            +D  P S   K  K +++S   +      +  P+S       +P+  + +       + 
Sbjct: 446 DKDSSPKSKEKKSKKNKSDSSVDNRESKKIKKEPSSPQAVQPNSPSQQQQQQQQNIDPND 505

Query: 468 GPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNG 476
            P TEE I+ VL++   V + DL+  FK  L+ P++K  F  ++  ++R+ + NG
Sbjct: 506 PPFTEEYIKIVLQKSKKVKSLDLINIFKGPLKNPDNKPIFLAMVHNVARVVEENG 549

[Close]

BLAST of HG10012099 vs. ExPASy TrEMBL
Match: A0A0A0LCA6 (Transcription initiation factor IIF subunit alpha OS=Cucumis sativus OX=3659 GN=Csa_3G624050 PE=3 SV=1)

HSP 1 Score: 868.6 bits (2243), Expect = 1.2e-248
Identity = 471/538 (87.55%), Postives = 481/538 (89.41%), Query Frame = 0


Query: 1   MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYN 60
           MSFDLLLK SCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT      EYN
Sbjct: 1   MSFDLLLKQSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYN 60

Query: 61  VRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGLQGRQLTDALREKYKNRPWLL 120
           VRASAS+DKNYFIGRFMSGLPNFSKKRNAENKWSLYK+GLQGRQL+DALREKYKNRPWLL
Sbjct: 61  VRASASNDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGLQGRQLSDALREKYKNRPWLL 120

Query: 121 EDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKM 180
           EDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP                    AEEKM
Sbjct: 121 EDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKM 180

Query: 181 KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRG 240
           KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKE+VGTSGRGRRK TGDENEGN SDRG
Sbjct: 181 KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKETVGTSGRGRRKTTGDENEGNVSDRG 240

Query: 241 EEDEEEEAQRKNRLGLNK-------------------------KGDDWEHEEIFTDDDET 300
           EEDEEEEA RKNRLGL+K                         KGDDWEHEEIFTDDDET
Sbjct: 241 EEDEEEEAARKNRLGLSKKGGGDDDDEEGPRGGDHDLDDDDIEKGDDWEHEEIFTDDDET 300

Query: 301 TAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDG 360
           TAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSKSGKELKKLLRRTGGL DSDG
Sbjct: 301 TAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDG 360

Query: 361 EDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRK 420
           EDDDDDDD DEDTGGTPVLPSKQKDTVKEEAAA+SPSKPTPSGSAKGTPSTAKTAKGKRK
Sbjct: 361 EDDDDDDDVDEDTGGTPVLPSKQKDTVKEEAAANSPSKPTPSGSAKGTPSTAKTAKGKRK 420

Query: 421 NGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIR 480
           NGEDVKPSSAPPKKMKTETESK+TDEGVPTSKSTASKGAPASVKTEP++HSGPVTEEEIR
Sbjct: 421 NGEDVKPSSAPPKKMKTETESKATDEGVPTSKSTASKGAPASVKTEPSSHSGPVTEEEIR 480

Query: 481 AVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED 488
           AVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Sbjct: 481 AVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED 538

[Close]

BLAST of HG10012099 vs. ExPASy TrEMBL
Match: A0A1S4DWR2 (Transcription initiation factor IIF subunit alpha OS=Cucumis melo OX=3656 GN=LOC103489800 PE=3 SV=1)

HSP 1 Score: 865.1 bits (2234), Expect = 1.3e-247
Identity = 470/538 (87.36%), Postives = 478/538 (88.85%), Query Frame = 0


Query: 1   MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYN 60
           MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT      EYN
Sbjct: 1   MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYN 60

Query: 61  VRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGLQGRQLTDALREKYKNRPWLL 120
           VRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYK+GLQGRQLTDALREKYKNRPWLL
Sbjct: 61  VRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGLQGRQLTDALREKYKNRPWLL 120

Query: 121 EDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKM 180
           EDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP                    AE KM
Sbjct: 121 EDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEXKM 180

Query: 181 KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRG 240
           KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKE+VGTSGRGRRK TGDENEGN SDRG
Sbjct: 181 KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKETVGTSGRGRRKTTGDENEGNVSDRG 240

Query: 241 EEDEEEEAQRKNRLGLNK-------------------------KGDDWEHEEIFTDDDET 300
           EEDEEEEA RKNRLGL+K                         KGDDWEHEEIFTDDDET
Sbjct: 241 EEDEEEEAARKNRLGLSKKGGGDDDDEEGPRGGDHDLDDDDIEKGDDWEHEEIFTDDDET 300

Query: 301 TAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDG 360
           TAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSKSGKELKKLLRRTGGL DSDG
Sbjct: 301 TAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDG 360

Query: 361 EDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRK 420
           EDD+DDDD DEDTGGTPVLPSKQKDTVKEEAAA+SPSKPTPSGSAKGTPSTAKTAKGKRK
Sbjct: 361 EDDEDDDDVDEDTGGTPVLPSKQKDTVKEEAAANSPSKPTPSGSAKGTPSTAKTAKGKRK 420

Query: 421 NGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIR 480
           NGEDVKPSSAPPKKMKTETE K TDEGVPTSKSTASKGAPASVKTEP++HSGPVTEEEIR
Sbjct: 421 NGEDVKPSSAPPKKMKTETELKPTDEGVPTSKSTASKGAPASVKTEPSSHSGPVTEEEIR 480

Query: 481 AVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED 488
           AVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQK NGGPSYVVLRKPED
Sbjct: 481 AVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKINGGPSYVVLRKPED 538

[Close]

BLAST of HG10012099 vs. ExPASy TrEMBL
Match: A0A6J1ESX1 (Transcription initiation factor IIF subunit alpha OS=Cucurbita moschata OX=3662 GN=LOC111437424 PE=3 SV=1)

HSP 1 Score: 836.3 bits (2159), Expect = 6.7e-239
Identity = 459/539 (85.16%), Postives = 472/539 (87.57%), Query Frame = 0


Query: 1   MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYN 60
           MS DLLLKPSCSGCGSTTELYGSNCKHMTLCL CGKTMAENKGKCYDCGAT      EYN
Sbjct: 1   MSLDLLLKPSCSGCGSTTELYGSNCKHMTLCLRCGKTMAENKGKCYDCGATVTRLIREYN 60

Query: 61  VRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGLQGRQLTDALREKYKNRPWLL 120
           VRAS+SSDKNYFIGRFMSGLPNFSKKRNAENKWSLYK+GLQGRQLTDALREKYKNRPWLL
Sbjct: 61  VRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGLQGRQLTDALREKYKNRPWLL 120

Query: 121 EDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKM 180
           EDETGQ QFQGHLEGSQSATYYLLVLQGKEFTAIP                    AEEKM
Sbjct: 121 EDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKM 180

Query: 181 KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRG 240
           KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDK+SVG +GRGRRKPT DENEGN SDRG
Sbjct: 181 KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRG 240

Query: 241 EEDEEEEAQRKNRLGLNK-------------------------KGDDWEHEEIFTDDDET 300
           EEDEEEEA RKNRLGLNK                         KGDDWEHEEIFTDDDET
Sbjct: 241 EEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEKGDDWEHEEIFTDDDET 300

Query: 301 TAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDG 360
           TAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSKSGKELKKLLRRTGGL DSDG
Sbjct: 301 TAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDG 360

Query: 361 -EDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKR 420
            E+DDDDDDA+E++GGTPV PSKQKD VKEEAAA+SPSKP PSGSAKGTPSTAKTAKGKR
Sbjct: 361 EEEDDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKR 420

Query: 421 KNGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEI 480
           KNGEDVKPSSAPPKKMKTETESKSTDEGV TS+STASKGA ASVKTEPA+ SGPVTEEEI
Sbjct: 421 KNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEEI 480

Query: 481 RAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED 488
           RAVLRQRTPVTTQDLVAKFKARLR+ EDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Sbjct: 481 RAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED 539

[Close]

BLAST of HG10012099 vs. ExPASy TrEMBL
Match: A0A6J1K1N5 (Transcription initiation factor IIF subunit alpha OS=Cucurbita maxima OX=3661 GN=LOC111491607 PE=3 SV=1)

HSP 1 Score: 831.2 bits (2146), Expect = 2.2e-237
Identity = 456/542 (84.13%), Postives = 472/542 (87.08%), Query Frame = 0


Query: 1   MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYN 60
           MS DLLLKPSCSGCGSTTELYGSNCKHMTLCL+CGKTMAENKGKCYDCGAT      EYN
Sbjct: 1   MSLDLLLKPSCSGCGSTTELYGSNCKHMTLCLSCGKTMAENKGKCYDCGATVTRLIREYN 60

Query: 61  VRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGLQGRQLTDALREKYKNRPWLL 120
           VRAS+SSDKNYFIGRFMSGLPNFSKKRNAENKWSLYK+GLQGRQLTDALREKYKNRPWLL
Sbjct: 61  VRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGLQGRQLTDALREKYKNRPWLL 120

Query: 121 EDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKM 180
           EDETGQ QFQGHLEGSQSATYYLLVLQGKEFTAIP                    AEEKM
Sbjct: 121 EDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKM 180

Query: 181 KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRG 240
           KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDK+S+G +GRGRRKPT DENEGN SDRG
Sbjct: 181 KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSIGATGRGRRKPTSDENEGNVSDRG 240

Query: 241 EEDEEEEAQRKNRLGLNKK--------------------------GDDWEHEEIFTDDDE 300
           EEDEEEEA RKNRLGLNKK                          GDDWEHEEIFTDDDE
Sbjct: 241 EEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDHDLDDDDIESIGDDWEHEEIFTDDDE 300

Query: 301 TTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSD 360
           TTAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSKSGKELKKLLRR+GGL DSD
Sbjct: 301 TTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRSGGLNDSD 360

Query: 361 G---EDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAK 420
           G   EDDDDDDDA+E++GGTPV PSKQKD VKEEAAA+SPSKP PSGSAKGT STAKTAK
Sbjct: 361 GEEEEDDDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSPSKPAPSGSAKGTSSTAKTAK 420

Query: 421 GKRKNGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTE 480
           GKRKNGEDVKPSSAPPKKMKTETESKSTDEG+ TS+STASKGA ASVKTEPA+ SGPVTE
Sbjct: 421 GKRKNGEDVKPSSAPPKKMKTETESKSTDEGMSTSRSTASKGAAASVKTEPASASGPVTE 480

Query: 481 EEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKP 488
           EEIRAVLRQRTPVTTQDLVAKFKARLR+ EDKNAFAEILRRISRIQKTNGGPSYVVLRKP
Sbjct: 481 EEIRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKP 540

[Close]

BLAST of HG10012099 vs. ExPASy TrEMBL
Match: A0A6J1E3E1 (Transcription initiation factor IIF subunit alpha OS=Momordica charantia OX=3673 GN=LOC111025673 PE=3 SV=1)

HSP 1 Score: 830.5 bits (2144), Expect = 3.7e-237
Identity = 454/538 (84.39%), Postives = 471/538 (87.55%), Query Frame = 0


Query: 1   MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYN 60
           MSFDLLLKPSCSGCGS+T+LYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT      EYN
Sbjct: 1   MSFDLLLKPSCSGCGSSTDLYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYN 60

Query: 61  VRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGLQGRQLTDALREKYKNRPWLL 120
           VRASASSDKNYFIGRFMSGLPNFS+KRNAENKWSLYK+GLQGRQL+DALREKYKNRPWLL
Sbjct: 61  VRASASSDKNYFIGRFMSGLPNFSRKRNAENKWSLYKEGLQGRQLSDALREKYKNRPWLL 120

Query: 121 EDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKM 180
           EDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP                    AEEKM
Sbjct: 121 EDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKM 180

Query: 181 KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRG 240
           KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDK++VG SGRGRRK TGDENEGNASDRG
Sbjct: 181 KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDAVGASGRGRRKTTGDENEGNASDRG 240

Query: 241 EEDEEEEAQRKNRLGLNK------------------------KGDDWEHEEIFTDDDETT 300
           EEDEEEEA RKNRLGLNK                        KGDDWEHEEIFTDDDETT
Sbjct: 241 EEDEEEEAARKNRLGLNKKSGDDDDEEGPRGGDHDMDDDDIEKGDDWEHEEIFTDDDETT 300

Query: 301 APDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDGE 360
           APDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGL DSDGE
Sbjct: 301 APDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGE 360

Query: 361 DDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRK- 420
           DDDDDDD +ED GGTPV+ SKQKDTVKEEAAASSPSKP PSGS+KGTPS+ K +KGKRK 
Sbjct: 361 DDDDDDDVEEDIGGTPVVASKQKDTVKEEAAASSPSKPIPSGSSKGTPSSTKASKGKRKL 420

Query: 421 NGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIR 480
           NG+DVKPS+ PPKK+KTET+SKSTDEGV TSKSTASKGAPASVKTE A  SGPVTEEEIR
Sbjct: 421 NGDDVKPSNVPPKKVKTETDSKSTDEGVSTSKSTASKGAPASVKTESALPSGPVTEEEIR 480

Query: 481 AVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED 488
           AVLRQRTPVTTQDLVAKFKARLR+ EDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Sbjct: 481 AVLRQRTPVTTQDLVAKFKARLRSQEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED 538

[Close]

BLAST of HG10012099 vs. TAIR 10
Match: AT4G12610.1 (transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors )

HSP 1 Score: 332.0 bits (850), Expect = 7.9e-91
Identity = 223/385 (57.92%), Postives = 270/385 (70.13%), Query Frame = 0


Query: 139 VLQGKEFTAIPAEEKMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTS---G 198
           V Q K+ T   AEEKMKNR+KTADGY+RWMMKAA+NGPA FGEV+  ++KES GTS   G
Sbjct: 20  VAQYKQLTLEEAEEKMKNRRKTADGYQRWMMKAANNGPALFGEVD--NEKESGGTSGGGG 79

Query: 199 RGRRKPT-GDENEGNASDRGEEDEEEEAQRKNRLGLNK---------------------- 258
           RGR+K + GDE EGN SDRG+EDEEEEA RK+RLGLN+                      
Sbjct: 80  RGRKKSSGGDEEEGNVSDRGDEDEEEEASRKSRLGLNRKSNDDDDEEGPRGGDLDMDDDD 139

Query: 259 --KGDDWEHEEIFTDDDETTAPDREERED-LAPEVPAPPEIKQDEDDEDEENEGEGGLSK 318
             KGDDWEHEEIFTDDDE    D EERED LAPE+PAPPEIKQDEDDE+ E E EGGLSK
Sbjct: 140 IEKGDDWEHEEIFTDDDEAVGNDPEEREDLLAPEIPAPPEIKQDEDDEENEEE-EGGLSK 199

Query: 319 SGKELKKLLRRTGGLTDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPT 378
           SGKELKKLL +  GL +SD +DDDD DD +E   GT V  SKQK+  KEE   ++P+KP 
Sbjct: 200 SGKELKKLLGKANGLDESDEDDDDDSDDEEETNYGT-VTNSKQKEAAKEEPVDNAPAKPA 259

Query: 379 PSGSAKGTPSTAKTAKGKRK--NGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKG 438
           PSG  +GTP  AK +KGKRK  +G+  KPSS+  KK+KTE + KS+ +    +  + S  
Sbjct: 260 PSGPPRGTP-PAKPSKGKRKLNDGDSKKPSSSVQKKVKTENDPKSSLKEERANTVSKSNT 319

Query: 439 APASVKTEPAT--------HSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNA 485
              +VK EPA+         +GPVTE+EIRAVL ++  VTTQDLV++FKARL+T EDKNA
Sbjct: 320 PTKAVKAEPASAPASSSSAATGPVTEDEIRAVLMEKKQVTTQDLVSRFKARLKTKEDKNA 379

[Close]

BLAST of HG10012099 vs. TAIR 10
Match: AT4G12610.2 (transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors )

HSP 1 Score: 332.0 bits (850), Expect = 7.9e-91
Identity = 223/385 (57.92%), Postives = 270/385 (70.13%), Query Frame = 0


Query: 139 VLQGKEFTAIPAEEKMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTS---G 198
           V Q K+ T   AEEKMKNR+KTADGY+RWMMKAA+NGPA FGEV+  ++KES GTS   G
Sbjct: 20  VAQYKQLTLEEAEEKMKNRRKTADGYQRWMMKAANNGPALFGEVD--NEKESGGTSGGGG 79

Query: 199 RGRRKPT-GDENEGNASDRGEEDEEEEAQRKNRLGLNK---------------------- 258
           RGR+K + GDE EGN SDRG+EDEEEEA RK+RLGLN+                      
Sbjct: 80  RGRKKSSGGDEEEGNVSDRGDEDEEEEASRKSRLGLNRKSNDDDDEEGPRGGDLDMDDDD 139

Query: 259 --KGDDWEHEEIFTDDDETTAPDREERED-LAPEVPAPPEIKQDEDDEDEENEGEGGLSK 318
             KGDDWEHEEIFTDDDE    D EERED LAPE+PAPPEIKQDEDDE+ E E EGGLSK
Sbjct: 140 IEKGDDWEHEEIFTDDDEAVGNDPEEREDLLAPEIPAPPEIKQDEDDEENEEE-EGGLSK 199

Query: 319 SGKELKKLLRRTGGLTDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPT 378
           SGKELKKLL +  GL +SD +DDDD DD +E   GT V  SKQK+  KEE   ++P+KP 
Sbjct: 200 SGKELKKLLGKANGLDESDEDDDDDSDDEEETNYGT-VTNSKQKEAAKEEPVDNAPAKPA 259

Query: 379 PSGSAKGTPSTAKTAKGKRK--NGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKG 438
           PSG  +GTP  AK +KGKRK  +G+  KPSS+  KK+KTE + KS+ +    +  + S  
Sbjct: 260 PSGPPRGTP-PAKPSKGKRKLNDGDSKKPSSSVQKKVKTENDPKSSLKEERANTVSKSNT 319

Query: 439 APASVKTEPAT--------HSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNA 485
              +VK EPA+         +GPVTE+EIRAVL ++  VTTQDLV++FKARL+T EDKNA
Sbjct: 320 PTKAVKAEPASAPASSSSAATGPVTEDEIRAVLMEKKQVTTQDLVSRFKARLKTKEDKNA 379

The following BLAST results are available for this feature:

BLAST of HG10012099 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888042.1	6.0e-250	88.66	transcription initiation factor IIF subunit alpha isoform X1 [Benincasa hispida]	[more]
XP_004152016.1	2.5e-248	87.55	transcription initiation factor IIF subunit alpha isoform X1 [Cucumis sativus] >...	[more]
XP_016900419.1	2.8e-247	87.36	PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor IIF subunit alph...	[more]
XP_022931161.1	1.4e-238	85.16	transcription initiation factor IIF subunit alpha-like isoform X1 [Cucurbita mos...	[more]
KAG6606328.1	4.0e-238	84.97	Transcription initiation factor IIF subunit alpha, partial [Cucurbita argyrosper...	[more]

BLAST of HG10012099 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SU25	1.1e-150	59.56	Transcription initiation factor IIF subunit alpha OS=Arabidopsis thaliana OX=370...	[more]
Q54WV4	1.4e-07	24.82	General transcription factor IIF subunit 1 OS=Dictyostelium discoideum OX=44689 ...	[more]

BLAST of HG10012099 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCA6	1.2e-248	87.55	Transcription initiation factor IIF subunit alpha OS=Cucumis sativus OX=3659 GN=...	[more]
A0A1S4DWR2	1.3e-247	87.36	Transcription initiation factor IIF subunit alpha OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1ESX1	6.7e-239	85.16	Transcription initiation factor IIF subunit alpha OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1K1N5	2.2e-237	84.13	Transcription initiation factor IIF subunit alpha OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1E3E1	3.7e-237	84.39	Transcription initiation factor IIF subunit alpha OS=Momordica charantia OX=3673...	[more]

BLAST of HG10012099 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G12610.1	7.9e-91	57.92	transcription activators;DNA binding;RNA polymerase II transcription factors;cat...	[more]
AT4G12610.2	7.9e-91	57.92	transcription activators;DNA binding;RNA polymerase II transcription factors;cat...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008851	Transcription initiation factor IIF, alpha subunit	PFAM	PF05793	TFIIF_alpha	coord: 232..483 e-value: 3.5E-61 score: 207.4 coord: 50..150 e-value: 6.2E-24 score: 84.5
IPR008851	Transcription initiation factor IIF, alpha subunit	PANTHER	PTHR13011	TFIIF-ALPHA	coord: 1..484
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 405..484 e-value: 8.1E-20 score: 72.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 365..394
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 342..364
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 218..239
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 307..322
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..209
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..433
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 284..306
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 395..409
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 417..483
IPR011039	Transcription Factor IIF, Rap30/Rap74, interaction	SUPERFAMILY	50916	Rap30/74 interaction domains	coord: 51..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10012099.1	HG10012099.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032968	positive regulation of transcription elongation from RNA polymerase II promoter
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005674	transcription factor TFIIF complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0016251	RNA polymerase II general transcription initiation factor activity
molecular_function	GO:0001096	TFIIF-class transcription factor complex binding
molecular_function	GO:0003743	translation initiation factor activity