HG10012096 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10012096
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	acanthoscurrin-2-like
Location	Chr01: 17596790 .. 17597146 (-)
RNA-Seq Expression	HG10012096
Synteny	HG10012096

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAATTATAAGCTTAATTTCATGTTGGTTATGGCTATGGTTATGGCTGCATTTGCACTCCATGTTGCTGCAAGAACTGCCCCAAATGAGGCTGGAAAAGGCCTCAATGACCAAAAGAATTTCCTCAACTATGGTGGGATTGGTGGCATTGGTGATAGTGGACTCCCCTTCGGAGGTGGTGGCGGTATCGGCGGGGGAGGACTCGGAGGAGGCGGTGGCTTAGGCGGGCTTGGCGGTGGCATTGGTGGATACGGTGGGGTTGGGATCGGTGGCATTGGAGGTGGAGTTGGCGGTGGCGTGATTGGTGGAATTGGCGGGATTGGTGGTGGTGGAGGATTTGTTAAACTTCCTTGA

mRNA sequence

ATGGCAAATTATAAGCTTAATTTCATGTTGGTTATGGCTATGGTTATGGCTGCATTTGCACTCCATGTTGCTGCAAGAACTGCCCCAAATGAGGCTGGAAAAGGCCTCAATGACCAAAAGAATTTCCTCAACTATGGTGGGATTGGTGGCATTGGTGATAGTGGACTCCCCTTCGGAGGTGGTGGCGGTATCGGCGGGGGAGGACTCGGAGGAGGCGGTGGCTTAGGCGGGCTTGGCGGTGGCATTGGTGGATACGGTGGGGTTGGGATCGGTGGCATTGGAGGTGGAGTTGGCGGTGGCGTGATTGGTGGAATTGGCGGGATTGGTGGTGGTGGAGGATTTGTTAAACTTCCTTGA

Coding sequence (CDS)

ATGGCAAATTATAAGCTTAATTTCATGTTGGTTATGGCTATGGTTATGGCTGCATTTGCACTCCATGTTGCTGCAAGAACTGCCCCAAATGAGGCTGGAAAAGGCCTCAATGACCAAAAGAATTTCCTCAACTATGGTGGGATTGGTGGCATTGGTGATAGTGGACTCCCCTTCGGAGGTGGTGGCGGTATCGGCGGGGGAGGACTCGGAGGAGGCGGTGGCTTAGGCGGGCTTGGCGGTGGCATTGGTGGATACGGTGGGGTTGGGATCGGTGGCATTGGAGGTGGAGTTGGCGGTGGCGTGATTGGTGGAATTGGCGGGATTGGTGGTGGTGGAGGATTTGTTAAACTTCCTTGA

Protein sequence

MANYKLNFMLVMAMVMAAFALHVAARTAPNEAGKGLNDQKNFLNYGGIGGIGDSGLPFGGGGGIGGGGLGGGGGLGGLGGGIGGYGGVGIGGIGGGVGGGVIGGIGGIGGGGGFVKLP

Homology

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BLAST of HG10012096 vs. NCBI nr
Match: XP_038887967.1 (acanthoscurrin-1-like [Benincasa hispida])

HSP 1 Score: 152.1 bits (383), Expect = 2.9e-33
Identity = 109/121 (90.08%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MANYKLNFMLVMAMVMAAFALHVAARTAPNEAGKGLNDQKNFLNY---GGIGGIGDSGLP 60
           MANYKLN MLVMA  MAAFA+HVAARTAPNEAGKGLNDQKNFLNY   GGIGGIGDSGLP
Sbjct: 1   MANYKLNLMLVMA--MAAFAVHVAARTAPNEAGKGLNDQKNFLNYGGIGGIGGIGDSGLP 60

Query: 61  FGGGGGIGGGGLGGGGGLGGLGGGIGGYGGVGIGGIGGGVGGGVIGGIGGIGGGGGFVKL 119
           FGGGGGIGGGGLGGGGGLGGLGGGIGG GGVGIGGIGGG+GGGV   IGGIGGGGGFVKL
Sbjct: 61  FGGGGGIGGGGLGGGGGLGGLGGGIGGVGGVGIGGIGGGIGGGV---IGGIGGGGGFVKL 116

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BLAST of HG10012096 vs. NCBI nr
Match: XP_011652144.1 (glycine-rich cell wall structural protein 1 [Cucumis sativus] >KGN59369.1 hypothetical protein Csa_000879 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 3.2e-32
Identity = 106/122 (86.89%), Postives = 109/122 (89.34%), Query Frame = 0


Query: 1   MANYKLNFMLVMAMVMAAFALHVAARTAPN-EAGKGLNDQKNFLNYGGIG---GIGDSGL 60
           MANYKLN MLVMAM MAAFA HV ART PN +A KGLNDQKNFLNYGG+G   GIGDSGL
Sbjct: 1   MANYKLNLMLVMAMAMAAFAFHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL 60

Query: 61  PFGGGGGIGGGGLGGGGGLGGLGGGIGGYGGVGIGGIGGGVGGGVIGGIGGIGGGGGFVK 119
           PF  GGGIGGGGLGGGGGLGGLGGGIGG+GGVGIGGIGGGVGGGVIGGIGGIGGGGG VK
Sbjct: 61  PF--GGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVK 120

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BLAST of HG10012096 vs. NCBI nr
Match: XP_008447334.1 (PREDICTED: acanthoscurrin-2-like [Cucumis melo] >KAA0053623.1 acanthoscurrin-2-like [Cucumis melo var. makuwa] >TYJ97692.1 acanthoscurrin-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 146.7 bits (369), Expect = 1.2e-31
Identity = 105/121 (86.78%), Postives = 108/121 (89.26%), Query Frame = 0


Query: 1   MANYKLNFMLVMAMVMAAFALHVAARTAPNEAGKGLNDQKNFLNYGGIG---GIGDSGLP 60
           MANYKLN MLVMA  MAA ALHVAARTAPNEA KGLNDQKNFLNYGG+G   GIGD GLP
Sbjct: 1   MANYKLNLMLVMA--MAALALHVAARTAPNEAAKGLNDQKNFLNYGGVGGFSGIGDGGLP 60

Query: 61  FGGGGGIGGGGLGGGGGLGGLGGGIGGYGGVGIGGIGGGVGGGVIGGIGGIGGGGGFVKL 119
           F  GGG GGGGLGGGGGLGGLGGG+GG+GGVGIGGIGGGVGGGVIGGIGGIGGGGG VKL
Sbjct: 61  F--GGGFGGGGLGGGGGLGGLGGGVGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKL 117

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BLAST of HG10012096 vs. NCBI nr
Match: XP_023511522.1 (glycine-rich protein 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-19
Identity = 85/118 (72.03%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 1   MANYKLNFMLVMAMVMAAFALHVAARTAPNEAGKGLNDQKNFLNYGGIGGIGDSGLPFGG 60
           MAN KLN ML+MAM MAAFALHVAARTAP EA KGLNDQKNFL+ GG  GIGDSGLPF  
Sbjct: 1   MAN-KLNLMLIMAMAMAAFALHVAARTAPIEAAKGLNDQKNFLS-GGFSGIGDSGLPF-- 60

Query: 61  GGGIGGGGLGGGGGLGGLGGGIGGYGGVGIGGIGGGVGGGVIGGIGGIGGGGGFVKLP 119
                 GGLGGGGGLGGLGGG+GG+GGVGIGGIG GVG          G GGGFVK+P
Sbjct: 61  ------GGLGGGGGLGGLGGGLGGFGGVGIGGIGAGVG----------GVGGGFVKIP 98

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BLAST of HG10012096 vs. NCBI nr
Match: XP_022963787.1 (glycine-rich protein 5-like [Cucurbita moschata])

HSP 1 Score: 105.9 bits (263), Expect = 2.4e-19
Identity = 84/118 (71.19%), Postives = 89/118 (75.42%), Query Frame = 0


Query: 1   MANYKLNFMLVMAMVMAAFALHVAARTAPNEAGKGLNDQKNFLNYGGIGGIGDSGLPFGG 60
           MAN KLN ML+MAM MAAFALHVAARTAP EA KGLNDQKNFL  GG  GIGDSGLPF  
Sbjct: 1   MAN-KLNLMLIMAMAMAAFALHVAARTAPIEAAKGLNDQKNFLG-GGFSGIGDSGLPF-- 60

Query: 61  GGGIGGGGLGGGGGLGGLGGGIGGYGGVGIGGIGGGVGGGVIGGIGGIGGGGGFVKLP 119
                 GGLGGGGGLGG+GGG+GG+GGVGIGGIG GVG          G GGGFVK+P
Sbjct: 61  ------GGLGGGGGLGGIGGGLGGFGGVGIGGIGAGVG----------GVGGGFVKIP 98

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BLAST of HG10012096 vs. ExPASy TrEMBL
Match: A0A0A0LEM4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G814360 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.6e-32
Identity = 106/122 (86.89%), Postives = 109/122 (89.34%), Query Frame = 0


Query: 1   MANYKLNFMLVMAMVMAAFALHVAARTAPN-EAGKGLNDQKNFLNYGGIG---GIGDSGL 60
           MANYKLN MLVMAM MAAFA HV ART PN +A KGLNDQKNFLNYGG+G   GIGDSGL
Sbjct: 1   MANYKLNLMLVMAMAMAAFAFHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL 60

Query: 61  PFGGGGGIGGGGLGGGGGLGGLGGGIGGYGGVGIGGIGGGVGGGVIGGIGGIGGGGGFVK 119
           PF  GGGIGGGGLGGGGGLGGLGGGIGG+GGVGIGGIGGGVGGGVIGGIGGIGGGGG VK
Sbjct: 61  PF--GGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVK 120

[Close]

BLAST of HG10012096 vs. ExPASy TrEMBL
Match: A0A5A7UCJ9 (Acanthoscurrin-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37G00690 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 5.9e-32
Identity = 105/121 (86.78%), Postives = 108/121 (89.26%), Query Frame = 0


Query: 1   MANYKLNFMLVMAMVMAAFALHVAARTAPNEAGKGLNDQKNFLNYGGIG---GIGDSGLP 60
           MANYKLN MLVMA  MAA ALHVAARTAPNEA KGLNDQKNFLNYGG+G   GIGD GLP
Sbjct: 1   MANYKLNLMLVMA--MAALALHVAARTAPNEAAKGLNDQKNFLNYGGVGGFSGIGDGGLP 60

Query: 61  FGGGGGIGGGGLGGGGGLGGLGGGIGGYGGVGIGGIGGGVGGGVIGGIGGIGGGGGFVKL 119
           F  GGG GGGGLGGGGGLGGLGGG+GG+GGVGIGGIGGGVGGGVIGGIGGIGGGGG VKL
Sbjct: 61  F--GGGFGGGGLGGGGGLGGLGGGVGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKL 117

[Close]

BLAST of HG10012096 vs. ExPASy TrEMBL
Match: A0A1S3BI24 (acanthoscurrin-2-like OS=Cucumis melo OX=3656 GN=LOC103489805 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 5.9e-32
Identity = 105/121 (86.78%), Postives = 108/121 (89.26%), Query Frame = 0


Query: 1   MANYKLNFMLVMAMVMAAFALHVAARTAPNEAGKGLNDQKNFLNYGGIG---GIGDSGLP 60
           MANYKLN MLVMA  MAA ALHVAARTAPNEA KGLNDQKNFLNYGG+G   GIGD GLP
Sbjct: 1   MANYKLNLMLVMA--MAALALHVAARTAPNEAAKGLNDQKNFLNYGGVGGFSGIGDGGLP 60

Query: 61  FGGGGGIGGGGLGGGGGLGGLGGGIGGYGGVGIGGIGGGVGGGVIGGIGGIGGGGGFVKL 119
           F  GGG GGGGLGGGGGLGGLGGG+GG+GGVGIGGIGGGVGGGVIGGIGGIGGGGG VKL
Sbjct: 61  F--GGGFGGGGLGGGGGLGGLGGGVGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKL 117

[Close]

BLAST of HG10012096 vs. ExPASy TrEMBL
Match: A0A6J1HG59 (glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111463979 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.2e-19
Identity = 84/118 (71.19%), Postives = 89/118 (75.42%), Query Frame = 0


Query: 1   MANYKLNFMLVMAMVMAAFALHVAARTAPNEAGKGLNDQKNFLNYGGIGGIGDSGLPFGG 60
           MAN KLN ML+MAM MAAFALHVAARTAP EA KGLNDQKNFL  GG  GIGDSGLPF  
Sbjct: 1   MAN-KLNLMLIMAMAMAAFALHVAARTAPIEAAKGLNDQKNFLG-GGFSGIGDSGLPF-- 60

Query: 61  GGGIGGGGLGGGGGLGGLGGGIGGYGGVGIGGIGGGVGGGVIGGIGGIGGGGGFVKLP 119
                 GGLGGGGGLGG+GGG+GG+GGVGIGGIG GVG          G GGGFVK+P
Sbjct: 61  ------GGLGGGGGLGGIGGGLGGFGGVGIGGIGAGVG----------GVGGGFVKIP 98

[Close]

BLAST of HG10012096 vs. ExPASy TrEMBL
Match: A0A6J1DV95 (acanthoscurrin-1-like OS=Momordica charantia OX=3673 GN=LOC111024760 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.6e-16
Identity = 83/127 (65.35%), Postives = 97/127 (76.38%), Query Frame = 0


Query: 5   KLNFMLVMAMVMAAFALHVAARTAPNE----AGKGLNDQKNFLNYGGIG---GIGDSGLP 64
           K  +ML++ + MAAFA+  +AR AP +    AG+GL DQKN LNYGG+G   GIGD+GLP
Sbjct: 4   KALYMLMLVVAMAAFAVQASARAAPTDHHDPAGEGLKDQKNLLNYGGLGGFSGIGDNGLP 63

Query: 65  FGGGGGIGG-----GGLGGG-GGLGGLGGGIGGYGGVGIGGIGGGVGGGVIGGIGGIGGG 119
            GG GG+ G     GGLGGG GGLGGLGGGIGGYGG GIGGIG G+GGG +GGIGGIGGG
Sbjct: 64  VGGIGGVVGLGGGLGGLGGGAGGLGGLGGGIGGYGGGGIGGIGVGIGGGALGGIGGIGGG 123

The following BLAST results are available for this feature:

BLAST of HG10012096 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887967.1	2.9e-33	90.08	acanthoscurrin-1-like [Benincasa hispida]	[more]
XP_011652144.1	3.2e-32	86.89	glycine-rich cell wall structural protein 1 [Cucumis sativus] >KGN59369.1 hypoth...	[more]
XP_008447334.1	1.2e-31	86.78	PREDICTED: acanthoscurrin-2-like [Cucumis melo] >KAA0053623.1 acanthoscurrin-2-l...	[more]
XP_023511522.1	1.1e-19	72.03	glycine-rich protein 5-like [Cucurbita pepo subsp. pepo]	[more]
XP_022963787.1	2.4e-19	71.19	glycine-rich protein 5-like [Cucurbita moschata]	[more]

BLAST of HG10012096 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10012096 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEM4	1.6e-32	86.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G814360 PE=4 SV=1	[more]
A0A5A7UCJ9	5.9e-32	86.78	Acanthoscurrin-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A1S3BI24	5.9e-32	86.78	acanthoscurrin-2-like OS=Cucumis melo OX=3656 GN=LOC103489805 PE=4 SV=1	[more]
A0A6J1HG59	1.2e-19	71.19	glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111463979 PE=4 S...	[more]
A0A6J1DV95	1.6e-16	65.35	acanthoscurrin-1-like OS=Momordica charantia OX=3673 GN=LOC111024760 PE=4 SV=1	[more]

BLAST of HG10012096 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34463	GLYCINE-RICH PROTEIN	coord: 8..113
None	No IPR available	PANTHER	PTHR34463:SF11	GLYCINE-RICH PROTEIN	coord: 8..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10012096.1	HG10012096.1	mRNA