HG10012095 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10012095
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Stress response protein nst1
Location	Chr01: 17591978 .. 17592160 (+)
RNA-Seq Expression	HG10012095
Synteny	HG10012095

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAAACTAGTGTGGTTGGAATGGGGAGTGTTTTCATGATGCTTGTGGTGGTTGGACTTATTCTGTTTCTGCCGCTGGTGATCGGTTCCCTTCAGCCGCCGTCTGGCCTCCTGCTGCTTCTTTTTCCGGTCACTCTCGCCGCCGTGTTCTTCTTCCTCTCACGTGCGTCCTCCCATTGA

mRNA sequence

ATGGGAGAAACTAGTGTGGTTGGAATGGGGAGTGTTTTCATGATGCTTGTGGTGGTTGGACTTATTCTGTTTCTGCCGCTGGTGATCGGTTCCCTTCAGCCGCCGTCTGGCCTCCTGCTGCTTCTTTTTCCGGTCACTCTCGCCGCCGTGTTCTTCTTCCTCTCACGTGCGTCCTCCCATTGA

Coding sequence (CDS)

ATGGGAGAAACTAGTGTGGTTGGAATGGGGAGTGTTTTCATGATGCTTGTGGTGGTTGGACTTATTCTGTTTCTGCCGCTGGTGATCGGTTCCCTTCAGCCGCCGTCTGGCCTCCTGCTGCTTCTTTTTCCGGTCACTCTCGCCGCCGTGTTCTTCTTCCTCTCACGTGCGTCCTCCCATTGA

Protein sequence

MGETSVVGMGSVFMMLVVVGLILFLPLVIGSLQPPSGLLLLLFPVTLAAVFFFLSRASSH

Homology

[Close]

BLAST of HG10012095 vs. NCBI nr
Match: XP_038888108.1 (uncharacterized protein LOC120078008 [Benincasa hispida])

HSP 1 Score: 96.7 bits (239), Expect = 7.4e-17
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 1  MGETSVVGMGSVFMMLVVVGLILFLPLVIGSLQPPSGLLLLLFPVTLAAVFFFLSRASSH 60
          M +TSV GMGSV MMLVVVGL+LFLPLVIGSLQPPSGLLLL+FPVTLAAVFFFLSRASSH
Sbjct: 1  MEKTSVFGMGSVLMMLVVVGLVLFLPLVIGSLQPPSGLLLLIFPVTLAAVFFFLSRASSH 60

[Close]

BLAST of HG10012095 vs. NCBI nr
Match: XP_008447644.1 (PREDICTED: uncharacterized protein LOC103490051 [Cucumis melo] >KAA0037855.1 stress response protein nst1 [Cucumis melo var. makuwa] >TYK09825.1 stress response protein nst1 [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 1.4e-15
Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1  MGETSVVGMGSVFMMLVVVGLILFLPLVIGSLQPPSGLLLLLFPVTLAAVFFFLSRASSH 60
          M ETSV GMGSV +MLVVVGL+LFLPL+IGSLQPPSG LLLLFPVTLAAVFF LSRASSH
Sbjct: 1  MEETSVFGMGSVLIMLVVVGLVLFLPLLIGSLQPPSGFLLLLFPVTLAAVFFILSRASSH 60

[Close]

BLAST of HG10012095 vs. NCBI nr
Match: XP_011652820.1 (uncharacterized protein LOC105435116 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 9.0e-15
Identity = 51/60 (85.00%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 1  MGETSVVGMGSVFMMLVVVGLILFLPLVIGSLQPPSGLLLLLFPVTLAAVFFFLSRASSH 60
          M ET V GMGSV +MLVVVGL+L LPLVIGSLQPPSG LLLLFPVTLAAVFF LSRASSH
Sbjct: 1  MEETGVFGMGSVLIMLVVVGLVLLLPLVIGSLQPPSGFLLLLFPVTLAAVFFILSRASSH 60

[Close]

BLAST of HG10012095 vs. NCBI nr
Match: KAG7011309.1 (hypothetical protein SDJN02_26213, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 89.4 bits (220), Expect = 1.2e-14
Identity = 50/60 (83.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1   MGETSVVGMGSVFMMLVVVGLILFLPLVIGSLQPPSGLLLLLFPVTLAAVFFFLSRASSH 60
           MGE SV GMGSV +MLVVVG ILFLPLVIGS+QPPSGL+LL+FPVTLAAVFF LSRASS+
Sbjct: 52  MGENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSGLMLLIFPVTLAAVFFLLSRASSN 111

[Close]

BLAST of HG10012095 vs. NCBI nr
Match: KAE8650841.1 (hypothetical protein Csa_017605, partial [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 1.2e-11
Identity = 46/55 (83.64%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1  MGETSVVGMGSVFMMLVVVGLILFLPLVIGSLQPPSGLLLLLFPVTLAAVFFFLS 56
          M ET V GMGSV +MLVVVGL+L LPLVIGSLQPPSG LLLLFPVTLAAVFF LS
Sbjct: 1  MEETGVFGMGSVLIMLVVVGLVLLLPLVIGSLQPPSGFLLLLFPVTLAAVFFILS 55

[Close]

BLAST of HG10012095 vs. ExPASy TrEMBL
Match: A0A5A7T8Q7 (Stress response protein nst1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G001370 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.8e-16
Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1  MGETSVVGMGSVFMMLVVVGLILFLPLVIGSLQPPSGLLLLLFPVTLAAVFFFLSRASSH 60
          M ETSV GMGSV +MLVVVGL+LFLPL+IGSLQPPSG LLLLFPVTLAAVFF LSRASSH
Sbjct: 1  MEETSVFGMGSVLIMLVVVGLVLFLPLLIGSLQPPSGFLLLLFPVTLAAVFFILSRASSH 60

[Close]

BLAST of HG10012095 vs. ExPASy TrEMBL
Match: A0A1S3BHY2 (uncharacterized protein LOC103490051 OS=Cucumis melo OX=3656 GN=LOC103490051 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.8e-16
Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1  MGETSVVGMGSVFMMLVVVGLILFLPLVIGSLQPPSGLLLLLFPVTLAAVFFFLSRASSH 60
          M ETSV GMGSV +MLVVVGL+LFLPL+IGSLQPPSG LLLLFPVTLAAVFF LSRASSH
Sbjct: 1  MEETSVFGMGSVLIMLVVVGLVLFLPLLIGSLQPPSGFLLLLFPVTLAAVFFILSRASSH 60

[Close]

BLAST of HG10012095 vs. ExPASy TrEMBL
Match: A0A6P3ZL55 (stress response protein nst1 OS=Ziziphus jujuba OX=326968 GN=LOC107415812 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 7.0e-05
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 2   GETSVVGMGSVFMMLVVVGLILFLPLVIGSLQPPSGLLLLLFPVTLAAVFFFLSRASSH 61
           G+  V G GS+ M++VV  L+LFLPL +G++QPP    LL  PV L  VF FLSRAS+H
Sbjct: 164 GQDEVFGGGSILMIIVVGALLLFLPLTMGAVQPPPLFSLLAIPVFLLVVFIFLSRASTH 222

[Close]

BLAST of HG10012095 vs. ExPASy TrEMBL
Match: A0A2P5EXP0 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_139530 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-04
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 3  ETSVVGMGSVFMMLVVVGLILFLPLVIGSLQPPSGLLLLLFPVTLAAVFFFLSRASS 60
          +  V G+ SV M+LVV  L+LFLPL +G +QPPS   LL+FP+ L  VF  LSRASS
Sbjct: 35 DNGVCGVVSVVMILVVAALLLFLPLGMGPVQPPSAFTLLIFPLVLLVVFILLSRASS 91

The following BLAST results are available for this feature:

BLAST of HG10012095 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888108.1	7.4e-17	90.00	uncharacterized protein LOC120078008 [Benincasa hispida]	[more]
XP_008447644.1	1.4e-15	86.67	PREDICTED: uncharacterized protein LOC103490051 [Cucumis melo] >KAA0037855.1 str...	[more]
XP_011652820.1	9.0e-15	85.00	uncharacterized protein LOC105435116 [Cucumis sativus]	[more]
KAG7011309.1	1.2e-14	83.33	hypothetical protein SDJN02_26213, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAE8650841.1	1.2e-11	83.64	hypothetical protein Csa_017605, partial [Cucumis sativus]	[more]

BLAST of HG10012095 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10012095 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T8Q7	6.8e-16	86.67	Stress response protein nst1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3BHY2	6.8e-16	86.67	uncharacterized protein LOC103490051 OS=Cucumis melo OX=3656 GN=LOC103490051 PE=...	[more]
A0A6P3ZL55	7.0e-05	54.24	stress response protein nst1 OS=Ziziphus jujuba OX=326968 GN=LOC107415812 PE=4 S...	[more]
A0A2P5EXP0	1.6e-04	56.14	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_139530 PE=4 SV...	[more]

BLAST of HG10012095 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10012095.1	HG10012095.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane