HG10012090 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10012090
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Transcription factor PIF1-like isoform X1
Location	Chr01: 17402293 .. 17410011 (+)
RNA-Seq Expression	HG10012090
Synteny	HG10012090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCATGGGATGTGGTATGGTGCCTATGATGTTTCCTGGTGTACAACAATTTATGCCTCCAATGGGAATGGGACTTGGAATGGGCATGGGCATTGGCATGGAAACAGGCGTGAATCGTCCCATGATGCCGTATCCTAACATGTTAGCTGGACCGATGTTTCCGAGGCAAGCTGGAGCCGCTCAACTTGGACCAACTTTCTCTTTTCCACCCTTTCATATGGCACATGTTCCGAATACCGATCCATCAAGAATTCAAGAAACAAATCAGCCGGATCAAATGCACAGCTCATCAGGAATGCAAAATATAAATCAGCCAAGGGCCTCAAGTTCACTTGATGGCTATCAGCAGTTTCTTGGTTCCCGACAGATGCAGGTGAGAGCAGCATCATCACAGTCTTCCCCACAGGTATCATTATAACCAGTTGTGTGTGTATTATTACAGTTCATAATTGCATATATTTTACACTCTTAACTCTTCCACAGAATCAACTAGCCCTCCCACCAGTAACCCACAATCAACATACTAGTCAGAGACTCGAAAATATCGACAATCCCGAATCAGGAAGTCCTACCATGGATCCATGTAAGCTTTCATTTGAATGTTATTCTTGTTTCATTTGGTGCCTAAAGGTTCCTCTTCCTACCTTTTGAAATGTTGTACCTTGGAGCAGCTTAAGCTACTCTAATCTTAACTTTGTATGATTGCAGGTTGAAATTGGAGGAAGCATGGAATTTCTTAGATAGGTCCTACATTACATGCCTGCAAAATTTTGTAGCTAGGTAGAGTTTGATTATAATAACAACATAACACAGGTTGACATGTAAATTATGCATAGTTCATACCATTATCAAATGAGAACAACAGCTCATTTTGCAATTTTCTTCCTTTTCTTTCTTGGGATTTGTTTGAGTTTTTACACATTGATGATGTAAATTCTCAGATAAACACACCCTACAGATCAACTAATCGTGATTTGAGATTGTATCTTATAAATATTTGAGTCAGTTTGGAATGACTTTCTACGTGCTTAATAAATATTTGTAAAAACGAAAAAAATTGTTTTTAAGCACTTAAAAAGTCAATTCACATAGGCTTGGAGTCAAAGCAGGTAATTTGTTCTTGAACCATGGGGGAAATTCTCTCTGGATGGAATTGTCTGCATTTGCAATGACCTACTTGGAACTCTTGAAAGTGGATTATATTATTTCTGTCTCACGTGGTTTTTTTTTTCTTTTCTTTTTCTTTGATTTAGAGTATTGAAAGAGAAAAGGGAAGAGGAAGAAGACAGGCTGGTGAAGAGAAGACTGATGTGAATGAAGATAATTTTATTTGGATTTTGGAGGGACCAAACATAGACTAGATAATAAGTATTTTTAACATATTTAATCTAAATTTTGATATTTGTTTGTTTCCTATTAATTATAATTTTCTACCTATGAGTGTTACTATATTTGCTTCACAGCTTAGGCAAAGGAAAGAAGGATCAATCACATTTGAGTTTATGTTTTTTTTTATGCCATACCTTCTTGATTTTAAAGGCAAAGTTGCTTTTTCCTCATGATATACTGTCCAATGTCGATGTCATCCTAGAGGACATTTCTTTCCTGAAAATTCAAGATTTTCATGAATTAATGCGTTTATTATACAGTAATTTAAGAAGCCTGAACATCTGGAGATGCCTAGACATTCTAGGATGTCCTTATGGAAAGTATCTCAAAAGTTTTAAATGCTCCCTTAAAACATGGGTTTTTTAAGATTCCTGTGTTGAGAGCATAATCTTTTTACTCTTTCACCCTTTATATATATATATATATATATATATAATTTTGTTGAGAAATTAAAAATAACATATAAAATTAATATAAACTATATTAATTTTAAAAATTTTAAATTAGTAAAACACATAAATTTATATTAAATTAAGAGAATTTTTCATAGATAGAAAAAATATCAAACTATTTATAGAAAATAGCAAAAAAAAAAAAAATTATTGATAGATATTGATAGACTTCTATCAGCATCTATTAGACTTCAATAATTTCTATCACTGATAAACCTTGATAGACTTCTATCAGCGTCTATCACAACTATTTAAAAAGTTTTCTATTTTTGTGTAAATAGTTTTCCTTATTTTTCTATTTTTAAAAACTCCCTTTAAATTAAATTAATTATAAATTAATGAATAACTATAAATATTTTTTTTAGCATTATATAAATTTAAGACATTCTCGAGTAGAAATTCTATGAAACAAATACAGATATCTAAATAATTTGATAAATATTTATACAAAACAAATATGGTTATCTAAAAATGTCAAACATATGTAATTTTGGACATAAAAAATTTTGATTACCTACATTTTCAAAAAACAAACCATTCTTTAAGAGTTATAATAACTCTAAATTACATGAATGTCATAACATCACTAACTCCAAAGTAGCCTAAAAACATAAATGAAAGGTTTAAAATTGAAATTACTATAAAACCAACCATGAATTTGAGCTGAAGTCTTGGGATCATAATGTTTATAACCTTCCATAAATGAATAAAGCTCCACTTGAATAGTTTTTTATGTTTATTTTTTTTATATTGATGAGTATTTGGGTCAATTTACACGTACCTCAACTAATTTTATGAGACAATCTGCCTGACCCTACAACATTTAAGTATCTCTACTTGAAATAGTTTGAAGGGTAATTTTATGAATTGATGCTTCACTTGCACTAATTGACACTTGAATTACACATGCACTTGACTTTAACTTTATTGTCACGTCGTTCCACTAAACTTATTTTAAGTTTAACTTTAGTTTGTCATAAATAGGTTAAATGACAAATTTAGTCCTTGTGGTTTGGAGAAAGTTAAAATTTTGTCTCTATGATTTATAACTAGAATTCAATCTCGATAGTTTGAGAAAACTCTCATAAATAATCCTATAATACCTGCTTAAAAAATGAATTAAGTAGCCGTTCTATTTGGTTTGACTTTGAATATGTTATTATATGGTCACCATGGTTGAACTTAAAAACTTTATCAAATATCTGTCAAATGGTTTATATGAATTATCGAATAGCTACTTTGATAATATTTTTGTTTCTTGTTTCTCACTTTATGTTTTTTTTAAATAATAATAAAAAATAAAATGTGCTTGATAATTGTCTATTGTTTCTTATTTTTCTTTTTTTACTATAAAAAAGAGAAAAAGAACGTGTTTGATAACTATTTCTTTTTTTCTTTTGTAACTATTTTCTTTTGTTTCTTTTCTTTTTTCTTTTGATATTTTAAATAAAATTGTAAAATTTTAAAATGAAAATAAGTTTTAAAAAAAAGGTTATTTTCAAATATAGCAATATAAGTCAAAATATTTACAAATATAGTCAAATATGTCTATCAGTGATAGATAGTGATAGATGATAGTAGTCTTTCAGTGTTTATCACTGACAATGGATTTTGTTATATTTGAAAATATTTCTAGTAATTTTGTCATTTAAAACAATTACTCTTTTAAAAATTTAATATGGAATATTTGTATGTTGTAGTTATTTTTAGATATTTATCATGTATTTTAGAATTTTTGTTTATGTTTTGAAAAACGTTGGAACCAAGAAACTTGATCTTTATTGTGTTGTTTCAAAATTTTCTACACAATTTTGGTAACATTTTTGAAAAATAACAAACAAGAAACATAAACAGTTTACAAGATTCTTTTATTCTTAAAAAACTTGAAACAAAAAGCCAAATAAAGGTTAAATTGCAAATTTAGTAATCCATGTGGTTTAAAATTAGAATTTAGTTCATATGATTTGATAAAACCCTCCTAAATAGTCTTTAAAATAGGGACTAAATTCTAACTTTTTTTCAATCATAAAAATTAAATTCTAATTTTCTCCAAATTATAGAGACCAAATTCTAACTTTTAAAACTATAGGAACTAAATTCTAACTTTTTTAAAACTATAAAAACAAAATTCGAATTTTGAGAAAATTTATACCTTTCAATTTTGGGGTTGTATCAATTTAAAACCATAAATTAATAATTGTATCAATTTAAACCCTGAACTTTGAGAGTTGTATGAATTTAAATCACAAACTAATAATTGTATCAATTTAAACCATGAACTTTCATGAGTATATCAATTTAAACAAATTTAAACACTCAACTTTCGTAAGTGTATCCAAATAAAACATAAATAGAGAATTTAAATTGATATACTTATGGAGAATTTAAATTGATATACTTATGAAAGTTGAGGGTTTAAATTGACACAACTATAAATGTTTAGAGTTTAAATCGATACAATTATTAGTTCGAGGTTTAAATTAATATCATCAAAGTTTAGGATATAAATTCATATTTCTCTTTCTAATTTTTTTCCTATTTCTATTTCTTTTTATGAACCAAAACACTCCTTTTTGGTGTATTTCGGTTTTGTCAAAAATCCTCTCGTCGGACGGTGAAGCCAGGCGCCAAACCCCCTCCGGTGAGGCCTCTACTTTCCTTCTGCTTCTGTTATCGCCTCTTTGTTCTTCAGAATCCGTCTAATCTGATTGTTTGGTTAAAACTTGCTGAATTCGTTTTCTTTCTTTTGTTCTGCTTTCGGAGTCTTATGTCTGTTGGGAGTGATTTACATCAATCTGTTTTTGTTAATCTGCTTATGGTTGTGGAAGAATGTTGTAGTTTAGTTATTCTGGTGAATTCTTAACCGTCCGGACAGAATTTAAACTTCATTATTGATGATAGAAGCTTAAAATTGTCATCACTTCCAGCTTGATTGTTCTAATTTCATCATTTTTGGTTTGCAGCATTGAGTTTAAGAAATTGAACATTCTATGGGTCCTCGGAAATGTCAGGTCTGCAATGAAGCACCATCCAAATACAAATGCCCCCTATGCCTTGCACCTTAGTAAGAAATCAAGAAGATTTGTTTTTGGTTATTTTTGTGTAGTCTTTATTGAAAAGTCTCTGACCTTCATTCATTTGTGTGCTGGCTTCTCCCTTTCACTTTGCTTGAAGCTGCTCTCTGGTTTGTTTCAAGAAACACAAAGGTGCTGTTCTTTTGGACTTGGGTTTTTATTATTCTATTTATGTTCTATAGTTTGTATGAAGTTTCATGTTCTGATGGTCTATATAGTTCTTGTTGGCTTTTTATTTCGGGATAATTTCATAATGTGGCGAAATCGCTAGTTCTCTAGGTTGATGCTACTTGTGCTTTGTTATGAATTTGAACTCACTGCCCAAGTTCAAAGCAGATAATTGTTCTCAAGTTCCGTTGCCTGTATTTTAACCTTCTTTTAAGGTTTAGTTGATGCTTGCTGGAGGGTCTGGTATCTGTTTAAGGGTTGAATACTTATTAGTTATGTTTTTTACTTTTTTCAAGTTGAGGTACCCTTGAATGCTATGCTCCAATAAGTGGTTCATAGAGTGTTCTTTTACGTTACACACATTTTAAGAGCCCCAAATTTCAGATTAAATTAGGAAACATCTACAACATGTTCCAAATACACCTGAGCACCATGCTGCAGTAGGTGCTTGGTCTTTAGGGTTGTTAACACCTTTGGCCTTCCATGCTTCACTCCCTTGAATTTAAAATTTGGGCCAGATGGTGGACTGAAAGGGACTTCCTTCTTGGCATAATTGATTGTAGCTTGGTTAATAGCTAACCTATTGATGCCCAAGATTACATCGAAGTCCTATGTATTCAATTTGATCAACTTTGCTCCAAGAGTCTGGCCCCCAATAACTAGTTTTCCCAACTTCACTATAACAGTGAACCATATGGTGTAAATACCTGAAAGCAGGTAACCTAGAAGTTCTAGCTCTAAGTTAGCTGGTTGAACAAAGTCGGCAAAATAAAAGAATGACTTGACCTCGTGTCAAATAACATAAAATAGGAAAAACTAAGAATTGAGATAGTTCGTGTCAATAATTTACAAAGTATAAGATGAGAAAAAGACACACATATATCAAAGATAAAAGTCTAGAGCAAGCGTACCAGTAACAACTGCATATGCATTCTCAACTTCTTCCTTCGTAACCTTAAAGACGCATGCCTTCGATTTTCTTTCTTGATCAGGTGTTGGAGGATTCTTGGGGTCGACTTATCAATGTTAGGCTCACCCTTAGTTTGACAATCCTCCTTGAAGCAAGTCTTCTAGTCTACCTAATGTTGAACCCATAGTGGCCATTCTTCCTACACTTGAAGCAAGTGTTCTAGTCTACCTAATGTTGTCTGGTATTACGCCTATTGCACATGTTATATATGGAAGAAAAATGCCTTGTCCTTGTGTTTGCTGGAGATGAACTTTGTGAGGCTGGCTAGATGACGAGGGAATTGATTTCCTCTTAAACCCAAACAAAACCCACCTTGCAAAGTGGTCGTGCCTTCTTATCACCTTCTATCCATGATTAATGTACCGAGCACTGCAACAAAAGTTATAGGTTTTTTAGGACCAGAAAACCTCCAATCTCTTCATGTAACCCTTAATAAATCTATCGATTTTTCGCTTTGGCTAATCAAGTTTGGAGTGAAATGATATAGTTTTGTGAACTTTCTTTCATATTGAATCTCCGACATGTTGCCTTAAGTCAGATGTAGAAACTCGGTCTCCTTGTCATCTTTTACCATGTCAGTAGTAGTAGTCATGCCCTTGAAATTCTCATGAATTGAAGCATTTAAATTTTGTTAATCTGCTTGAGCATTAATACCTTATCGAATGACACTAACCGAACCGAAGGAACGCAAAGGGCAATTGGAAGAACTCTTGAATAAGGGATTTATTTGCTCTAGTGTGTCTCCTTGTCATGCTCTAGTTTTGTTCGTGATGAAAAGGACCATAGCAAGTTATTAGTACTTTTAGTGATTACTTTTCCATTTGAATAGGCTAGTTGATTCTTTTAAGTAGTTGGATTTAATTTTAGTTTAGTTTGTGAACTTGTTGAGGTTATTTCATTCATTCGTGGAGTTATGGTCATGTCTTTATTTTTGAGCTTGAGTTTTGTGGCTGTTGTTTAACTTCTAGATTTTTTATGCTTAAAGTTGTAGTGGCTTGATTGAAACTCTTTAATTGAAATCTAGTAAAGAGATAAGTTGTTTGATTCTTTTGTTTGAGCAAAGCTGTTATTTCATTTTATGGGAGTAACAGGTTTATATTCTTTGGTGAAGTGAGACTCAAGAGTTCTAATCCAAACTTCAGGCAGTTTCTTTTCAATAGTAATTTTCAGTTTGATTTTAATGAACTTGGTATCATAATTGAGTTTAACTGGGTAGGAAAAGTTGGAGACGTTCTCCAATAGTCTGAAATTTGTGGCGTTGCAAGCCGTCTGTGGCTGCATTTAATTCTGTTAGTATGATAACTTGTGTTATTTGCAACTTGTGCAGAAGTGCCCTGTGTCAAGCCTGTGTCTGCAGGGGACCAATCAAGTAAGACTAGGCCTATATTCACGTTTCATTTATCCCATTGTGTCATGTCATAGACCGCCCAATAATTGTCTACGAAGTTCCTTCCCGATTTTATCCTTTCGGATCCTGTGAATGTCAACAAACTTTATCTTCCTCATTCATTCTTCTAGTATTCATTGTACTCGCTGACCCCTTTTTATCCTTTCCATCTACAGCTGCTCCTAATGAAGCACTTGTAGATAGGCCAATATGTGTTGGAGACCAGAATGAAGTACTTGAAAAGTTGCAGCTAGAGGCTATTGGTATTAATTCATAA

mRNA sequence

ATGTCCATGGGATGTGGTATGGTGCCTATGATGTTTCCTGGTGTACAACAATTTATGCCTCCAATGGGAATGGGACTTGGAATGGGCATGGGCATTGGCATGGAAACAGGCGTGAATCGTCCCATGATGCCGTATCCTAACATGTTAGCTGGACCGATGTTTCCGAGGCAAGCTGGAGCCGCTCAACTTGGACCAACTTTCTCTTTTCCACCCTTTCATATGGCACATGTTCCGAATACCGATCCATCAAGAATTCAAGAAACAAATCAGCCGGATCAAATGCACAGCTCATCAGGAATGCAAAATATAAATCAGCCAAGGGCCTCAAGTTCACTTGATGGCTATCAGCAGTTTCTTGGTTCCCGACAGATGCAGGTGAGAGCAGCATCATCACAGTCTTCCCCACAGAATCAACTAGCCCTCCCACCAGTAACCCACAATCAACATACTAGTCAGAGACTCGAAAATATCGACAATCCCGAATCAGGAAGTCCTACCATGGATCCATCTGCTCCTAATGAAGCACTTGTAGATAGGCCAATATGTGTTGGAGACCAGAATGAAGTACTTGAAAAGTTGCAGCTAGAGGCTATTGGTATTAATTCATAA

Coding sequence (CDS)

ATGTCCATGGGATGTGGTATGGTGCCTATGATGTTTCCTGGTGTACAACAATTTATGCCTCCAATGGGAATGGGACTTGGAATGGGCATGGGCATTGGCATGGAAACAGGCGTGAATCGTCCCATGATGCCGTATCCTAACATGTTAGCTGGACCGATGTTTCCGAGGCAAGCTGGAGCCGCTCAACTTGGACCAACTTTCTCTTTTCCACCCTTTCATATGGCACATGTTCCGAATACCGATCCATCAAGAATTCAAGAAACAAATCAGCCGGATCAAATGCACAGCTCATCAGGAATGCAAAATATAAATCAGCCAAGGGCCTCAAGTTCACTTGATGGCTATCAGCAGTTTCTTGGTTCCCGACAGATGCAGGTGAGAGCAGCATCATCACAGTCTTCCCCACAGAATCAACTAGCCCTCCCACCAGTAACCCACAATCAACATACTAGTCAGAGACTCGAAAATATCGACAATCCCGAATCAGGAAGTCCTACCATGGATCCATCTGCTCCTAATGAAGCACTTGTAGATAGGCCAATATGTGTTGGAGACCAGAATGAAGTACTTGAAAAGTTGCAGCTAGAGGCTATTGGTATTAATTCATAA

Protein sequence

MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGMQNINQPRASSSLDGYQQFLGSRQMQVRAASSQSSPQNQLALPPVTHNQHTSQRLENIDNPESGSPTMDPSAPNEALVDRPICVGDQNEVLEKLQLEAIGINS

Homology

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BLAST of HG10012090 vs. NCBI nr
Match: XP_038887610.1 (transcription factor PIF1-like [Benincasa hispida] >XP_038887611.1 transcription factor PIF1-like [Benincasa hispida])

HSP 1 Score: 285.0 bits (728), Expect = 4.9e-73
Identity = 147/170 (86.47%), Postives = 150/170 (88.24%), Query Frame = 0


Query: 1   MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQAGA 60
           MSMGCGM+PMMFPGVQQFMPPMGMGLGMGMG GMETGVNR MMPYPNMLAGPMFPRQAGA
Sbjct: 371 MSMGCGMMPMMFPGVQQFMPPMGMGLGMGMGTGMETGVNRAMMPYPNMLAGPMFPRQAGA 430

Query: 61  AQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGMQNINQPRASSSLDGYQQFLG 120
            QLGPTF FPPFHMAHVPNTDPSRIQETNQ DQMHSSSGMQNIN PRASSSLDGY  FLG
Sbjct: 431 TQLGPTFPFPPFHMAHVPNTDPSRIQETNQADQMHSSSGMQNINSPRASSSLDGYHHFLG 490

Query: 121 SRQMQVRAASSQSSPQNQLALP-PVTHNQHTSQRLENIDNPESGSPTMDP 170
           S+QMQV AASS  SPQNQ   P P  HNQHTS+RLENIDN ESG  TMDP
Sbjct: 491 SQQMQVPAASSHPSPQNQPPAPLPGMHNQHTSRRLENIDNHESGCSTMDP 540

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BLAST of HG10012090 vs. NCBI nr
Match: KAA0037888.1 (transcription factor PIF1-like isoform X1 [Cucumis melo var. makuwa] >TYJ98022.1 transcription factor PIF1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 265.0 bits (676), Expect = 5.3e-67
Identity = 138/172 (80.23%), Postives = 145/172 (84.30%), Query Frame = 0


Query: 1   MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQAGA 60
           MSMGCGMVPMM+PGVQQFMPPMGMGLGMGMGIGME GVNRPMMPYPNMLAGPMFPR AGA
Sbjct: 116 MSMGCGMVPMMYPGVQQFMPPMGMGLGMGMGIGMEAGVNRPMMPYPNMLAGPMFPRLAGA 175

Query: 61  AQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGMQNINQPRASSSLDGYQQFLG 120
            QLGP+FSFPPFHMAHV N DPSRIQETNQ DQMHSSSGMQNIN PRASSS D Y QF G
Sbjct: 176 TQLGPSFSFPPFHMAHVSNADPSRIQETNQSDQMHSSSGMQNINLPRASSSFDSYHQFPG 235

Query: 121 SRQMQVRAASSQSSPQ--NQLALPPVTHNQHTSQRLENIDNPESGSPTMDPS 171
           S+QMQ+ AASSQ SPQ  + +   P T N     RLENIDN E+GSPTMDPS
Sbjct: 236 SQQMQMSAASSQPSPQFFHSMNRQPATRNTINIHRLENIDNHETGSPTMDPS 287

[Close]

BLAST of HG10012090 vs. NCBI nr
Match: XP_011651631.1 (transcription factor PIF1 [Cucumis sativus] >XP_011651632.1 transcription factor PIF1 [Cucumis sativus] >KGN58326.1 hypothetical protein Csa_017636 [Cucumis sativus])

HSP 1 Score: 258.8 bits (660), Expect = 3.8e-65
Identity = 140/172 (81.40%), Postives = 146/172 (84.88%), Query Frame = 0


Query: 1   MSMGCGMVPMMFPGVQQFMPP--MGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQA 60
           MSMGCGMVPMMFPG QQFMPP  MGMGLGMG+GIGME GVNRPMMPYPNMLAG MFP QA
Sbjct: 367 MSMGCGMVPMMFPGAQQFMPPMGMGMGLGMGIGIGMEAGVNRPMMPYPNMLAGQMFPWQA 426

Query: 61  GAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGMQNINQPRASSSLDGYQQF 120
           GA QLGP+ SFPPFHMAHV NTDPSRIQETNQ DQMHSSS MQNIN PRASSSLD Y QF
Sbjct: 427 GATQLGPSLSFPPFHMAHVSNTDPSRIQETNQSDQMHSSSEMQNINLPRASSSLDSYHQF 486

Query: 121 LGSRQMQVRAASSQSSPQNQ-LALPPVTHNQHTSQRLENIDNPESGSPTMDP 170
            GS+QMQ  A+SSQ S QNQ  AL P THNQHT +RLENIDN E+GSPTM P
Sbjct: 487 PGSQQMQKSASSSQPSLQNQPPALLPGTHNQHTRRRLENIDNHETGSPTMYP 538

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BLAST of HG10012090 vs. NCBI nr
Match: XP_022159238.1 (transcription factor PIF1-like isoform X1 [Momordica charantia])

HSP 1 Score: 250.0 bits (637), Expect = 1.8e-62
Identity = 133/171 (77.78%), Postives = 143/171 (83.63%), Query Frame = 0


Query: 1   MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQAGA 60
           MSMGCGM+PMMFPG+QQF+PPMGMGLGMGM  GMET  NRPMMPYPNMLAG  FPRQAGA
Sbjct: 345 MSMGCGMLPMMFPGMQQFVPPMGMGLGMGM--GMETSANRPMMPYPNMLAGSTFPRQAGA 404

Query: 61  AQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGMQNINQPRASSSLDGYQQFLG 120
           AQLGPTF F  FHMAH+ + DPSRIQ TNQ D MHSS GMQNINQ R SSSLDGYQQFLG
Sbjct: 405 AQLGPTFPFAAFHMAHIASNDPSRIQGTNQSDPMHSSPGMQNINQSRMSSSLDGYQQFLG 464

Query: 121 SRQMQVRAASSQSSPQNQLALPPVTHNQHTSQR--LENIDNPESGSPTMDP 170
           S+QMQV AA SQ SPQNQ A PP THNQHT+ R  LENI+N +SG+ TMDP
Sbjct: 465 SQQMQVPAAVSQRSPQNQPAAPPGTHNQHTNSRSGLENIENYKSGNRTMDP 513

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BLAST of HG10012090 vs. NCBI nr
Match: XP_022159249.1 (transcription factor PIF1-like isoform X2 [Momordica charantia])

HSP 1 Score: 250.0 bits (637), Expect = 1.8e-62
Identity = 133/171 (77.78%), Postives = 143/171 (83.63%), Query Frame = 0


Query: 1   MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQAGA 60
           MSMGCGM+PMMFPG+QQF+PPMGMGLGMGM  GMET  NRPMMPYPNMLAG  FPRQAGA
Sbjct: 343 MSMGCGMLPMMFPGMQQFVPPMGMGLGMGM--GMETSANRPMMPYPNMLAGSTFPRQAGA 402

Query: 61  AQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGMQNINQPRASSSLDGYQQFLG 120
           AQLGPTF F  FHMAH+ + DPSRIQ TNQ D MHSS GMQNINQ R SSSLDGYQQFLG
Sbjct: 403 AQLGPTFPFAAFHMAHIASNDPSRIQGTNQSDPMHSSPGMQNINQSRMSSSLDGYQQFLG 462

Query: 121 SRQMQVRAASSQSSPQNQLALPPVTHNQHTSQR--LENIDNPESGSPTMDP 170
           S+QMQV AA SQ SPQNQ A PP THNQHT+ R  LENI+N +SG+ TMDP
Sbjct: 463 SQQMQVPAAVSQRSPQNQPAAPPGTHNQHTNSRSGLENIENYKSGNRTMDP 511

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BLAST of HG10012090 vs. ExPASy Swiss-Prot
Match: Q8GZM7 (Transcription factor PIF1 OS=Arabidopsis thaliana OX=3702 GN=PIF1 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.5e-11
Identity = 62/158 (39.24%), Postives = 79/158 (50.00%), Query Frame = 0


Query: 1   MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPM-FPRQAG 60
           MSMGCGM+PMM+PG+QQ+MP M MG+GM   I   +      MP+PNMLA     P Q  
Sbjct: 340 MSMGCGMMPMMYPGMQQYMPHMAMGMGMNQPIPPPS-----FMPFPNMLAAQRPLPTQTH 399

Query: 61  AAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGMQNINQPR-ASSSLDGYQQF 120
            A  GP +   P H      +DPSR+   NQ  Q   +SG     QP+  +   D YQQF
Sbjct: 400 MAGSGPQY---PVHA-----SDPSRVFVPNQ--QYDPTSG-----QPQYPAGYTDPYQQF 459

Query: 121 LGSR-----QMQVRAASSQSSPQNQLALPPVTHNQHTS 152
            G       Q Q +A S  SS +   +     H  HT+
Sbjct: 460 RGLHPTQPPQFQNQATSYPSSSRVSSSKESEDHGNHTT 477

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BLAST of HG10012090 vs. ExPASy Swiss-Prot
Match: Q8GT73 (Transcription factor bHLH119 OS=Arabidopsis thaliana OX=3702 GN=BHLH119 PE=2 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 5.4e-06
Identity = 52/142 (36.62%), Postives = 70/142 (49.30%), Query Frame = 0


Query: 1   MSMGCGMV-PMMFPG-VQQFMPPMGMGLGMGMGIGMETGVNR--PMMPYPNMLAGPMFPR 60
           MSMG GM+ PMM  G  QQFMP M MG+          G+NR  P +P+P    G  FPR
Sbjct: 413 MSMGHGMMPPMMHEGNTQQFMPHMAMGM---------KGMNRPPPFVPFP----GKTFPR 472

Query: 61  QAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGMQNINQPRASSSLDGYQ 120
               A +GP++   P      P+T  S +   + P  +HS+      NQPR  + ++ Y 
Sbjct: 473 PGHMAGVGPSY---PALRYPFPDTQASDLSRVHVP-SLHSNPVP---NQPRFPAYINPYS 532

Query: 121 QFLGSRQMQVRAASSQSSPQNQ 139
           QF+G  QMQ      Q  P +Q
Sbjct: 533 QFVGLHQMQQPPLPLQGQPTSQ 534

[Close]

BLAST of HG10012090 vs. ExPASy TrEMBL
Match: A0A5D3BE16 (Transcription factor PIF1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00510 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.6e-67
Identity = 138/172 (80.23%), Postives = 145/172 (84.30%), Query Frame = 0


Query: 1   MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQAGA 60
           MSMGCGMVPMM+PGVQQFMPPMGMGLGMGMGIGME GVNRPMMPYPNMLAGPMFPR AGA
Sbjct: 116 MSMGCGMVPMMYPGVQQFMPPMGMGLGMGMGIGMEAGVNRPMMPYPNMLAGPMFPRLAGA 175

Query: 61  AQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGMQNINQPRASSSLDGYQQFLG 120
            QLGP+FSFPPFHMAHV N DPSRIQETNQ DQMHSSSGMQNIN PRASSS D Y QF G
Sbjct: 176 TQLGPSFSFPPFHMAHVSNADPSRIQETNQSDQMHSSSGMQNINLPRASSSFDSYHQFPG 235

Query: 121 SRQMQVRAASSQSSPQ--NQLALPPVTHNQHTSQRLENIDNPESGSPTMDPS 171
           S+QMQ+ AASSQ SPQ  + +   P T N     RLENIDN E+GSPTMDPS
Sbjct: 236 SQQMQMSAASSQPSPQFFHSMNRQPATRNTINIHRLENIDNHETGSPTMDPS 287

[Close]

BLAST of HG10012090 vs. ExPASy TrEMBL
Match: A0A0A0LE09 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G622450 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.8e-65
Identity = 140/172 (81.40%), Postives = 146/172 (84.88%), Query Frame = 0


Query: 1   MSMGCGMVPMMFPGVQQFMPP--MGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQA 60
           MSMGCGMVPMMFPG QQFMPP  MGMGLGMG+GIGME GVNRPMMPYPNMLAG MFP QA
Sbjct: 367 MSMGCGMVPMMFPGAQQFMPPMGMGMGLGMGIGIGMEAGVNRPMMPYPNMLAGQMFPWQA 426

Query: 61  GAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGMQNINQPRASSSLDGYQQF 120
           GA QLGP+ SFPPFHMAHV NTDPSRIQETNQ DQMHSSS MQNIN PRASSSLD Y QF
Sbjct: 427 GATQLGPSLSFPPFHMAHVSNTDPSRIQETNQSDQMHSSSEMQNINLPRASSSLDSYHQF 486

Query: 121 LGSRQMQVRAASSQSSPQNQ-LALPPVTHNQHTSQRLENIDNPESGSPTMDP 170
            GS+QMQ  A+SSQ S QNQ  AL P THNQHT +RLENIDN E+GSPTM P
Sbjct: 487 PGSQQMQKSASSSQPSLQNQPPALLPGTHNQHTRRRLENIDNHETGSPTMYP 538

[Close]

BLAST of HG10012090 vs. ExPASy TrEMBL
Match: A0A6J1DY63 (transcription factor PIF1-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111025654 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 8.5e-63
Identity = 133/171 (77.78%), Postives = 143/171 (83.63%), Query Frame = 0


Query: 1   MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQAGA 60
           MSMGCGM+PMMFPG+QQF+PPMGMGLGMGM  GMET  NRPMMPYPNMLAG  FPRQAGA
Sbjct: 342 MSMGCGMLPMMFPGMQQFVPPMGMGLGMGM--GMETSANRPMMPYPNMLAGSTFPRQAGA 401

Query: 61  AQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGMQNINQPRASSSLDGYQQFLG 120
           AQLGPTF F  FHMAH+ + DPSRIQ TNQ D MHSS GMQNINQ R SSSLDGYQQFLG
Sbjct: 402 AQLGPTFPFAAFHMAHIASNDPSRIQGTNQSDPMHSSPGMQNINQSRMSSSLDGYQQFLG 461

Query: 121 SRQMQVRAASSQSSPQNQLALPPVTHNQHTSQR--LENIDNPESGSPTMDP 170
           S+QMQV AA SQ SPQNQ A PP THNQHT+ R  LENI+N +SG+ TMDP
Sbjct: 462 SQQMQVPAAVSQRSPQNQPAAPPGTHNQHTNSRSGLENIENYKSGNRTMDP 510

[Close]

BLAST of HG10012090 vs. ExPASy TrEMBL
Match: A0A6J1DY96 (transcription factor PIF1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111025654 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 8.5e-63
Identity = 133/171 (77.78%), Postives = 143/171 (83.63%), Query Frame = 0


Query: 1   MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQAGA 60
           MSMGCGM+PMMFPG+QQF+PPMGMGLGMGM  GMET  NRPMMPYPNMLAG  FPRQAGA
Sbjct: 345 MSMGCGMLPMMFPGMQQFVPPMGMGLGMGM--GMETSANRPMMPYPNMLAGSTFPRQAGA 404

Query: 61  AQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGMQNINQPRASSSLDGYQQFLG 120
           AQLGPTF F  FHMAH+ + DPSRIQ TNQ D MHSS GMQNINQ R SSSLDGYQQFLG
Sbjct: 405 AQLGPTFPFAAFHMAHIASNDPSRIQGTNQSDPMHSSPGMQNINQSRMSSSLDGYQQFLG 464

Query: 121 SRQMQVRAASSQSSPQNQLALPPVTHNQHTSQR--LENIDNPESGSPTMDP 170
           S+QMQV AA SQ SPQNQ A PP THNQHT+ R  LENI+N +SG+ TMDP
Sbjct: 465 SQQMQVPAAVSQRSPQNQPAAPPGTHNQHTNSRSGLENIENYKSGNRTMDP 513

[Close]

BLAST of HG10012090 vs. ExPASy TrEMBL
Match: A0A6J1E1W0 (transcription factor PIF1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111025654 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 8.5e-63
Identity = 133/171 (77.78%), Postives = 143/171 (83.63%), Query Frame = 0


Query: 1   MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQAGA 60
           MSMGCGM+PMMFPG+QQF+PPMGMGLGMGM  GMET  NRPMMPYPNMLAG  FPRQAGA
Sbjct: 343 MSMGCGMLPMMFPGMQQFVPPMGMGLGMGM--GMETSANRPMMPYPNMLAGSTFPRQAGA 402

Query: 61  AQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGMQNINQPRASSSLDGYQQFLG 120
           AQLGPTF F  FHMAH+ + DPSRIQ TNQ D MHSS GMQNINQ R SSSLDGYQQFLG
Sbjct: 403 AQLGPTFPFAAFHMAHIASNDPSRIQGTNQSDPMHSSPGMQNINQSRMSSSLDGYQQFLG 462

Query: 121 SRQMQVRAASSQSSPQNQLALPPVTHNQHTSQR--LENIDNPESGSPTMDP 170
           S+QMQV AA SQ SPQNQ A PP THNQHT+ R  LENI+N +SG+ TMDP
Sbjct: 463 SQQMQVPAAVSQRSPQNQPAAPPGTHNQHTNSRSGLENIENYKSGNRTMDP 511

[Close]

BLAST of HG10012090 vs. TAIR 10
Match: AT2G20180.2 (phytochrome interacting factor 3-like 5 )

HSP 1 Score: 68.6 bits (166), Expect = 6.8e-12
Identity = 62/158 (39.24%), Postives = 79/158 (50.00%), Query Frame = 0


Query: 1   MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPM-FPRQAG 60
           MSMGCGM+PMM+PG+QQ+MP M MG+GM   I   +      MP+PNMLA     P Q  
Sbjct: 340 MSMGCGMMPMMYPGMQQYMPHMAMGMGMNQPIPPPS-----FMPFPNMLAAQRPLPTQTH 399

Query: 61  AAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGMQNINQPR-ASSSLDGYQQF 120
            A  GP +   P H      +DPSR+   NQ  Q   +SG     QP+  +   D YQQF
Sbjct: 400 MAGSGPQY---PVHA-----SDPSRVFVPNQ--QYDPTSG-----QPQYPAGYTDPYQQF 459

Query: 121 LGSR-----QMQVRAASSQSSPQNQLALPPVTHNQHTS 152
            G       Q Q +A S  SS +   +     H  HT+
Sbjct: 460 RGLHPTQPPQFQNQATSYPSSSRVSSSKESEDHGNHTT 477

[Close]

BLAST of HG10012090 vs. TAIR 10
Match: AT2G20180.1 (phytochrome interacting factor 3-like 5 )

HSP 1 Score: 68.6 bits (166), Expect = 6.8e-12
Identity = 62/158 (39.24%), Postives = 79/158 (50.00%), Query Frame = 0


Query: 1   MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPM-FPRQAG 60
           MSMGCGM+PMM+PG+QQ+MP M MG+GM   I   +      MP+PNMLA     P Q  
Sbjct: 269 MSMGCGMMPMMYPGMQQYMPHMAMGMGMNQPIPPPS-----FMPFPNMLAAQRPLPTQTH 328

Query: 61  AAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGMQNINQPR-ASSSLDGYQQF 120
            A  GP +   P H      +DPSR+   NQ  Q   +SG     QP+  +   D YQQF
Sbjct: 329 MAGSGPQY---PVHA-----SDPSRVFVPNQ--QYDPTSG-----QPQYPAGYTDPYQQF 388

Query: 121 LGSR-----QMQVRAASSQSSPQNQLALPPVTHNQHTS 152
            G       Q Q +A S  SS +   +     H  HT+
Sbjct: 389 RGLHPTQPPQFQNQATSYPSSSRVSSSKESEDHGNHTT 406

[Close]

BLAST of HG10012090 vs. TAIR 10
Match: AT2G20180.3 (phytochrome interacting factor 3-like 5 )

HSP 1 Score: 68.6 bits (166), Expect = 6.8e-12
Identity = 62/158 (39.24%), Postives = 79/158 (50.00%), Query Frame = 0


Query: 1   MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPM-FPRQAG 60
           MSMGCGM+PMM+PG+QQ+MP M MG+GM   I   +      MP+PNMLA     P Q  
Sbjct: 340 MSMGCGMMPMMYPGMQQYMPHMAMGMGMNQPIPPPS-----FMPFPNMLAAQRPLPTQTH 399

Query: 61  AAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGMQNINQPR-ASSSLDGYQQF 120
            A  GP +   P H      +DPSR+   NQ  Q   +SG     QP+  +   D YQQF
Sbjct: 400 MAGSGPQY---PVHA-----SDPSRVFVPNQ--QYDPTSG-----QPQYPAGYTDPYQQF 459

Query: 121 LGSR-----QMQVRAASSQSSPQNQLALPPVTHNQHTS 152
            G       Q Q +A S  SS +   +     H  HT+
Sbjct: 460 RGLHPTQPPQFQNQATSYPSSSRVSSSKESEDHGNHTT 477

[Close]

BLAST of HG10012090 vs. TAIR 10
Match: AT4G28811.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 52.8 bits (125), Expect = 3.8e-07
Identity = 52/142 (36.62%), Postives = 70/142 (49.30%), Query Frame = 0


Query: 1   MSMGCGMV-PMMFPG-VQQFMPPMGMGLGMGMGIGMETGVNR--PMMPYPNMLAGPMFPR 60
           MSMG GM+ PMM  G  QQFMP M MG+          G+NR  P +P+P    G  FPR
Sbjct: 413 MSMGHGMMPPMMHEGNTQQFMPHMAMGM---------KGMNRPPPFVPFP----GKTFPR 472

Query: 61  QAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGMQNINQPRASSSLDGYQ 120
               A +GP++   P      P+T  S +   + P  +HS+      NQPR  + ++ Y 
Sbjct: 473 PGHMAGVGPSY---PALRYPFPDTQASDLSRVHVP-SLHSNPVP---NQPRFPAYINPYS 532

Query: 121 QFLGSRQMQVRAASSQSSPQNQ 139
           QF+G  QMQ      Q  P +Q
Sbjct: 533 QFVGLHQMQQPPLPLQGQPTSQ 534

The following BLAST results are available for this feature:

BLAST of HG10012090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887610.1	4.9e-73	86.47	transcription factor PIF1-like [Benincasa hispida] >XP_038887611.1 transcription...	[more]
KAA0037888.1	5.3e-67	80.23	transcription factor PIF1-like isoform X1 [Cucumis melo var. makuwa] >TYJ98022.1...	[more]
XP_011651631.1	3.8e-65	81.40	transcription factor PIF1 [Cucumis sativus] >XP_011651632.1 transcription factor...	[more]
XP_022159238.1	1.8e-62	77.78	transcription factor PIF1-like isoform X1 [Momordica charantia]	[more]
XP_022159249.1	1.8e-62	77.78	transcription factor PIF1-like isoform X2 [Momordica charantia]	[more]

BLAST of HG10012090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GZM7	9.5e-11	39.24	Transcription factor PIF1 OS=Arabidopsis thaliana OX=3702 GN=PIF1 PE=1 SV=1	[more]
Q8GT73	5.4e-06	36.62	Transcription factor bHLH119 OS=Arabidopsis thaliana OX=3702 GN=BHLH119 PE=2 SV=...	[more]

BLAST of HG10012090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BE16	2.6e-67	80.23	Transcription factor PIF1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A0A0LE09	1.8e-65	81.40	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G622450 PE=4 S...	[more]
A0A6J1DY63	8.5e-63	77.78	transcription factor PIF1-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1DY96	8.5e-63	77.78	transcription factor PIF1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1E1W0	8.5e-63	77.78	transcription factor PIF1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC1...	[more]

BLAST of HG10012090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20180.2	6.8e-12	39.24	phytochrome interacting factor 3-like 5	[more]
AT2G20180.1	6.8e-12	39.24	phytochrome interacting factor 3-like 5	[more]
AT2G20180.3	6.8e-12	39.24	phytochrome interacting factor 3-like 5	[more]
AT4G28811.1	3.8e-07	36.62	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..175
None	No IPR available	PANTHER	PTHR45855:SF34	TRANSCRIPTION FACTOR BHLH FAMILY-RELATED	coord: 1..143
IPR031066	Basic helix-loop-helix (bHLH) transcription factors ALC-like, plant	PANTHER	PTHR45855	TRANSCRIPTION FACTOR PIF1-RELATED	coord: 1..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10012090.1	HG10012090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity