HG10012085 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10012085
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	protein LOW PSII ACCUMULATION 1, chloroplastic
Location	Chr01: 17335999 .. 17339870 (+)
RNA-Seq Expression	HG10012085
Synteny	HG10012085

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGCGGCAAATTCTGGGTATCGTGGCGGCATCGAGACCATCCCTCGAAATTTGCTTCCATTGACAAACTGTGAAACTACCTCACGTGTCAATGCTCAGTTTCTCGAGTCGTTAACCATGGTGGTTTCCCTTTCCATGCCCAACATTTCCTCCTGCAACAACATTGCTCGTCCTCTTCATAACACTCCTGATTTCAGATCCTGCCGCCGTTTCCGCTGCCATGTTCATCGGAAGGCGGCCTCCTTTAATTCTAGCCCTAGTCTACCAGATTCGCTTCGTTTTCTTCATTACGCCAGACGAAATTTAGCTAACTTCACTTGCTCGGCTGCTGATAAACCGGAAATCAGGTTCTTCTCTCTTTCTCTGCCGTGGTAGTGTCTACAATGGATCGATAATGGCTGATGATTTTAATCCTATTATGAATTTTACATCTAAGCACTTGACATTTGATTGATTTTAGGTAGTTTCATGTTATTTTTCTTTTGTTCATGAGATTATGTGTTTGGATGGCTGAAAACCAACATATATTTGTGGAAATTAGGAGGGTCATAACTGGGTTCTTATATGAATTTTGTATTTGTGTATTTTCCAATTGAGTATTTAAGTTGGTGACTTCGTATTTTATGCCATGAGCTACAGTGCTTGTCTGCGTTTCTCTTTCTCTTATTTGTTATTTGATCACAATTTGATTTGTGTATGAACAAATCTATAGATAGTTAAAAGGCTCATTTGGTACCCGTTTAGTTTTATGTTTTTGAAAATTAAGCTTATTTCCTCTCAATTTGTTACCATGGTTATCATCCTTCTTAAGTAAAATAGTTTAATTCTTTGCCGAATTCTAAAAACAAAAACAAGTTTTTATTTTTTTATAGAATCAACAACTTTCATTGATTAAAAATGAAAGAATGTGAGGGCATACAAAAAAAAAACGAAGCCCACAAAAAACACTCCTTAAAGAAAGGGAGACCAAGTAAAATGTTTCCTAGAGAGTAGTTACAAAAGGTGTTCGAAATCGAAGCTCAAAGGGAGATAAAACTTAAGCAAAGACCACACATCATGCTAGGAGTCCTCTCCAACCCTTTAAACACTTTGTTAATTCTCTCTCCCCATAAAACCCATAACAAAGCGCACACCCCAGCATCCCAAAGAAAGCGGTCCTTCTCCCTACAAAGCGAATTAAGGAGGAACTCCTCAATCAAGCCACTGACACTCCTCTGAGGAGCCAATTGAAACCTAACTCCTAAAAGAAGCAATTCCACAATGAACGCACAACTCCAGCGCAGATGATCCAGGTCTTCCTCCGCCTTCCAACAAAGAATACAACAGAAGGGACCAACTAATGAAGGTAACTTCCTCAAAAGTCGATCCATCAAGTTCGCACGACTAAGTAGTAAAACTTGCCAAGAAAAGAAATTAACTTTCTTAGGAATCTTTATCCTCCACAAGGCAACAAAATGGGACTTATGGTAGAGTGATCCAACAAATATCGAAAGAAAGACTTACAAGAGAAACCATATAATGGGTTCAGACTCCAAACACGAATGTCCTTTCTCCCAAGCCTAAAACCAAACTCTCCAATCAAAGACAAAAGTATAACAAACCTCCTTTATCGATCAATGAGCGACAAAAGCCAAACGAAAAAGAAACATAGCTCTCCAACCAAACAAGAAAATCAGATATAAAACAATGCTTAAGGGAAGACAAATGATAAAGACGTGGAAAACCGAGCAGAGGGGTCTATCCTCCACCCACTGATCCTCCCAAAAATACGTTTTTCCCCTGCCCCACCATGCAACGAACAAGATGGGAAAAAGAAGGGAGCTCAGAAGAAATGTCCTTCCATAAATTTCAAGAAATGCCTTTAACCTCACTCGCAAAAATCAAAGGGATGAGGGTCATGCTTGCTAACAACTCTATGCCATAAGGAATCAGACTCAGGGGGAAACGCCACATCCACTTGGCCAACAAGGCTTTGTTCCAAAACCTTAAAACCTTAAATTAGTTTTTGTTTTTGACATTTATGCTTGTTCTCCTAATTTCCTTACCATGTTTTTCACCTTTCTTAAAGAATCATTTGAATTCTTAGTCAAGTTTGAAAACAAAAACGAGCTTTTAAAATCTACTTTTTTCGGTCTTCAAAACTTGAATTGGTTTTTGAAAATATTGGTAGAAAGTGAATAGCAAAACAAAGATAAATATAAGTGGAAATAGTGTTTATAATCTTGATTTTTAAGCCTAAATGGTTATCAAACTGGGTCTGCAATTTTCTAATGTGGTGTTTATTTTTTTGGGGGGAGTTGAGTGAGTGAGCCTGGCTGTGTTCTAACCTAGTCTCTTTTTCCATTACGCCTGTTATTCAACCTGAAATATGGCGTTGTGTAACTGTATTTGGTTTTTTCTTAGTTCCACGGCCAAGATAAGAAGTGAAGTTCTTTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCAAGTGGTACATTGGGAGGATTGATAGCAACCACTCAATTGCTTGCTGCATTGGCAAACTCATCAAGAGCTGAAGAAGTCCCTGATATTCTGAAAGGACTTGGAATAGACTTCGGAGCCGTAGCCCTTTTTGCATTTCTTTATTTCAGAGAGAACAATGCAAAAAATGCTCAGTTGGCTAGACTGTCAAGAGAAGAAAGCCTTTCCAATTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCCATCAGCACTTTGCGTGGGATTGCTCGTCTGGTAATTTGTGCTGGCCCTGAATCCTTTATCATGGAAGCTTTTAAATCAAGTGAACCTTTCACTGAACGACTTCTAGAACGGGGTGTTTTAGTCGTACCCCTTGCCACAGATGTCAGTACACTGAAGTTTGAGTTTGATGAACGTGAAGAGGTGAAGGATATAACCACCAAAAGGAAAAGACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCAGCGTAAGTCATTATAATTAACATCCATTTTCACAATTGTTCTCCTTCTCCTTCCCTCATGTAATTTTCCTTTTCTTGTGAACAATAGGTGGTTAGATGAACAGAAGAAGTTGGCTGGAGTCTCCTCCGACTCTCCAGTGTAAGTTGTCCTTGTTGTTAAACTTTGAATTCAAATTGATGAAGTGTAAAATGGTTTTCTTTTTAATGCTTGAACTCCCAATCAAGTTGTGTCGTAGGTATTGATTTTTTTTATTTAAGTACTACTTTGGCCCTATACTTTTAGTTTTGATTCATTTTAGTTGTCTGTTCAAAATGTTCATTTAGCCTCGTAGTTTTAACAAGTGGTCAATTTCTCCCTATACGCAGATGTTTAACACAACTTGTATAAATGAAGGGACCAAAATAGTTATTTTATGTAAGTATAGAGACAAAAATGGACATTTTCAAAGTACATGCACCAAAATGAACAATAGTTGAAATTGCATAAATTGAAAAGAACCAAAGTCGGAAGTATAGAAACTGGAGTAGTATTAGTTTTGTAATGAAATATATTGTTTCATTAATCATCATTCATGAGTTATCCAATTTGGAGTCGCATAGTTGGTAATGTAAACTGCACAGAAAAAAAAGGAAAGGAAAGGAAAGGAAATAAACTTTTTGCTGAATCTAATGCCAAAACTAGTTAATCTTACAGAAGTTAACCAAAGTAGAATTTAAAGCTAAACTTTTTCTATGTTAATGTTTGTTCATGCAGGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGCGGTGTTGGCTATCCTCCATGGAATGCTCTTGTAGCACAATTACCACCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGACGGGAGAGTTCTTTGA

mRNA sequence

ATGGTGGCGGCAAATTCTGGGTATCGTGGCGGCATCGAGACCATCCCTCGAAATTTGCTTCCATTGACAAACTGTGAAACTACCTCACGTGTCAATGCTCAGTTTCTCGAGTCGTTAACCATGGTGGTTTCCCTTTCCATGCCCAACATTTCCTCCTGCAACAACATTGCTCGTCCTCTTCATAACACTCCTGATTTCAGATCCTGCCGCCGTTTCCGCTGCCATGTTCATCGGAAGGCGGCCTCCTTTAATTCTAGCCCTAGTCTACCAGATTCGCTTCGTTTTCTTCATTACGCCAGACGAAATTTAGCTAACTTCACTTGCTCGGCTGCTGATAAACCGGAAATCAGTTCCACGGCCAAGATAAGAAGTGAAGTTCTTTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCAAGTGGTACATTGGGAGGATTGATAGCAACCACTCAATTGCTTGCTGCATTGGCAAACTCATCAAGAGCTGAAGAAGTCCCTGATATTCTGAAAGGACTTGGAATAGACTTCGGAGCCGTAGCCCTTTTTGCATTTCTTTATTTCAGAGAGAACAATGCAAAAAATGCTCAGTTGGCTAGACTGTCAAGAGAAGAAAGCCTTTCCAATTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCCATCAGCACTTTGCGTGGGATTGCTCGTCTGGTAATTTGTGCTGGCCCTGAATCCTTTATCATGGAAGCTTTTAAATCAAGTGAACCTTTCACTGAACGACTTCTAGAACGGGGTGTTTTAGTCGTACCCCTTGCCACAGATGTCAGTACACTGAAGTTTGAGTTTGATGAACGTGAAGAGGTGAAGGATATAACCACCAAAAGGAAAAGACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCAGCGTGGTTAGATGAACAGAAGAAGTTGGCTGGAGTCTCCTCCGACTCTCCAGTGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGCGGTGTTGGCTATCCTCCATGGAATGCTCTTGTAGCACAATTACCACCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGACGGGAGAGTTCTTTGA

Coding sequence (CDS)

ATGGTGGCGGCAAATTCTGGGTATCGTGGCGGCATCGAGACCATCCCTCGAAATTTGCTTCCATTGACAAACTGTGAAACTACCTCACGTGTCAATGCTCAGTTTCTCGAGTCGTTAACCATGGTGGTTTCCCTTTCCATGCCCAACATTTCCTCCTGCAACAACATTGCTCGTCCTCTTCATAACACTCCTGATTTCAGATCCTGCCGCCGTTTCCGCTGCCATGTTCATCGGAAGGCGGCCTCCTTTAATTCTAGCCCTAGTCTACCAGATTCGCTTCGTTTTCTTCATTACGCCAGACGAAATTTAGCTAACTTCACTTGCTCGGCTGCTGATAAACCGGAAATCAGTTCCACGGCCAAGATAAGAAGTGAAGTTCTTTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCAAGTGGTACATTGGGAGGATTGATAGCAACCACTCAATTGCTTGCTGCATTGGCAAACTCATCAAGAGCTGAAGAAGTCCCTGATATTCTGAAAGGACTTGGAATAGACTTCGGAGCCGTAGCCCTTTTTGCATTTCTTTATTTCAGAGAGAACAATGCAAAAAATGCTCAGTTGGCTAGACTGTCAAGAGAAGAAAGCCTTTCCAATTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCCATCAGCACTTTGCGTGGGATTGCTCGTCTGGTAATTTGTGCTGGCCCTGAATCCTTTATCATGGAAGCTTTTAAATCAAGTGAACCTTTCACTGAACGACTTCTAGAACGGGGTGTTTTAGTCGTACCCCTTGCCACAGATGTCAGTACACTGAAGTTTGAGTTTGATGAACGTGAAGAGGTGAAGGATATAACCACCAAAAGGAAAAGACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCAGCGTGGTTAGATGAACAGAAGAAGTTGGCTGGAGTCTCCTCCGACTCTCCAGTGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGCGGTGTTGGCTATCCTCCATGGAATGCTCTTGTAGCACAATTACCACCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGACGGGAGAGTTCTTTGA

Protein sequence

MVAANSGYRGGIETIPRNLLPLTNCETTSRVNAQFLESLTMVVSLSMPNISSCNNIARPLHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSLRFLHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

Homology

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BLAST of HG10012085 vs. NCBI nr
Match: XP_038888898.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida] >XP_038888899.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 609.0 bits (1569), Expect = 2.7e-170
Identity = 313/333 (93.99%), Postives = 316/333 (94.89%), Query Frame = 0


Query: 41  MVVSLSMPNISSCNNIARPLH--NTPDFRSCRRFRCHVHRKAASFNSSPSLPDSLRFLHY 100
           M VSLS PNISSCNNI RP H   T DF+  RR  CHVHRK  SFNSSP+LPDSL  LHY
Sbjct: 1   MAVSLSTPNISSCNNITRPPHFSRTSDFKFRRRICCHVHRKTLSFNSSPTLPDSLPSLHY 60

Query: 101 ARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLA 160
           ARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLA
Sbjct: 61  ARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLA 120

Query: 161 ALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVD 220
           ALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVD
Sbjct: 121 ALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVD 180

Query: 221 QNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLKFE 280
           QNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTL FE
Sbjct: 181 QNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLNFE 240

Query: 281 FDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGS 340
           FDEREEVKD+TTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGS
Sbjct: 241 FDEREEVKDMTTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGS 300

Query: 341 GVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 372
           GVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 GVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 333

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BLAST of HG10012085 vs. NCBI nr
Match: XP_022963501.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata] >XP_022963502.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 606.7 bits (1563), Expect = 1.4e-169
Identity = 313/376 (83.24%), Postives = 331/376 (88.03%), Query Frame = 0


Query: 3   AANSGYRGGIETIPRNLLPLTNCETTSRVNAQFLESLTMVVSLSMPNISSCNNIARP--- 62
           AANSGYRG IET  RNLLPL   ETT  +N Q+LE   MVVS+++  I SCNN  RP   
Sbjct: 7   AANSGYRGAIETFLRNLLPLIIWETTLYINCQYLEWSIMVVSMAI--IPSCNNFGRPPHC 66

Query: 63  ----LHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSLRFLHYARRNLANFTCSAADKPE 122
                HN  + + CRR  CHVHR   SFN  PS+ DSLR+L Y RRNLA+ TCSA+DKPE
Sbjct: 67  SRTRSHNARNLKFCRRICCHVHRNPVSFNFGPSVADSLRYLQYRRRNLASVTCSASDKPE 126

Query: 123 ISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKG 182
           ISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDIL G
Sbjct: 127 ISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILNG 186

Query: 183 LGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLV 242
           LGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVI ISTLRGIARLV
Sbjct: 187 LGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVITISTLRGIARLV 246

Query: 243 ICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRL 302
           ICAGPESFIMEAFK+SEPFTERLLERGVLV+P ATD S+L FEFDEREE+KDITTKRKRL
Sbjct: 247 ICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSLNFEFDEREEMKDITTKRKRL 306

Query: 303 WRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPV 362
           WRLTPVYM++WSAWLD+QKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPV
Sbjct: 307 WRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPV 366

Query: 363 KGLWSGLLDGMDGRVL 372
           KGLWSGLLDGMDGRVL
Sbjct: 367 KGLWSGLLDGMDGRVL 380

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BLAST of HG10012085 vs. NCBI nr
Match: XP_023554665.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023554666.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 603.6 bits (1555), Expect = 1.2e-168
Identity = 311/376 (82.71%), Postives = 330/376 (87.77%), Query Frame = 0


Query: 3   AANSGYRGGIETIPRNLLPLTNCETTSRVNAQFLESLTMVVSLSMPNISSCNNIARP--- 62
           AANSGYRG IET  RNLLPL   ETT  +N ++LE   MVVS+++  I SCNN  RP   
Sbjct: 7   AANSGYRGAIETFLRNLLPLIIWETTLYINCKYLEWSIMVVSMAI--IPSCNNFGRPPHC 66

Query: 63  ----LHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSLRFLHYARRNLANFTCSAADKPE 122
                HN  + + CRR  CHVHR   SFN  PS+ DSLR+L Y RRNLA+ TCSA+DKPE
Sbjct: 67  SRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSLRYLQYRRRNLASVTCSASDKPE 126

Query: 123 ISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKG 182
           ISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDIL G
Sbjct: 127 ISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILNG 186

Query: 183 LGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLV 242
           LGIDFGAVA FAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVI ISTLRGIARLV
Sbjct: 187 LGIDFGAVAFFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVITISTLRGIARLV 246

Query: 243 ICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRL 302
           ICAGPESFIMEAFK+SEPFTERLLERGVLV+P ATD S+L FEFDEREE+KDITTKRKRL
Sbjct: 247 ICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSLNFEFDEREEMKDITTKRKRL 306

Query: 303 WRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPV 362
           WRLTPVYM++WSAWLD+QKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPV
Sbjct: 307 WRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPV 366

Query: 363 KGLWSGLLDGMDGRVL 372
           KGLWSGLLDGMDGRVL
Sbjct: 367 KGLWSGLLDGMDGRVL 380

[Close]

BLAST of HG10012085 vs. NCBI nr
Match: KAG7011306.1 (Protein LOW PSII ACCUMULATION 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 585.9 bits (1509), Expect = 2.5e-163
Identity = 311/396 (78.54%), Postives = 330/396 (83.33%), Query Frame = 0


Query: 3   AANSGYRGGIETIPRNLLPLTNCETTSRVNAQFLESLTMVVSLSMPNISSCNNIARP--- 62
           AANSGYRG IET  RNLLPL   ETT  +N Q+LE   MVVS+++  I SCNN  RP   
Sbjct: 19  AANSGYRGAIETFLRNLLPLIIWETTLYINCQYLEWSIMVVSMAI--IPSCNNFGRPPHC 78

Query: 63  ----LHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSLRFLHYARRNLANFTCSAADKPE 122
                HN  + + CRR  CHVHR   SFN  PS+ DSLR+L Y  R+LA+ TCSA+DKPE
Sbjct: 79  SRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSLRYLKY--RDLASVTCSASDKPE 138

Query: 123 I--------------------SSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ 182
           I                    SSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ
Sbjct: 139 ISTPVIQYEMRLCVTVSVFFLSSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ 198

Query: 183 LLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL 242
           LLAALANSSRAEEVPDIL GLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL
Sbjct: 199 LLAALANSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL 258

Query: 243 RVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTL 302
           RVDQNKVI ISTLRGIARLVICAGPESFIMEAFK+SEPFTERLLERGVLV+P ATD S+L
Sbjct: 259 RVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSL 318

Query: 303 KFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRV 362
            FEFDEREE+KDITTKRKRLWRLTPVYM++WSAWLD+QKKLAGVSSDSPVYLSLRMDGRV
Sbjct: 319 NFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRV 378

Query: 363 RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 372
           RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 379 RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 410

[Close]

BLAST of HG10012085 vs. NCBI nr
Match: XP_004152010.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus] >KGN58323.1 hypothetical protein Csa_017553 [Cucumis sativus])

HSP 1 Score: 576.2 bits (1484), Expect = 2.0e-160
Identity = 298/338 (88.17%), Postives = 308/338 (91.12%), Query Frame = 0


Query: 41  MVVSLSMPNISSCNNIA-------RPLHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSL 100
           M VSL  P+ISS NNIA        P HN  DF+  RR  C VHRK  SF+SSP LP SL
Sbjct: 1   MAVSLFTPSISSFNNIAPPPHFSPTPSHNASDFKFRRRSYCRVHRKTVSFSSSPRLPVSL 60

Query: 101 RFLHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 160
           RFL Y RRNLANF CSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  RFLVYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 161 TQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 220
           TQLL ALANSSRA+EVPDIL+GLG+DFGAVALFAFLYFRENNAKNAQLARLSREESLSNL
Sbjct: 121 TQLLGALANSSRADEVPDILEGLGVDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 221 KLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVS 280
           KLRVDQNKVIPIS LRGIARLVICAGPESFI+EAFKSSEPFTERLLERGVLVVPLATDV+
Sbjct: 181 KLRVDQNKVIPISILRGIARLVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVT 240

Query: 281 TLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 340
           TL FEFD+REEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGV+SDSPVYLSLRMDG
Sbjct: 241 TLNFEFDDREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSDSPVYLSLRMDG 300

Query: 341 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 372
           RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]

BLAST of HG10012085 vs. ExPASy Swiss-Prot
Match: Q9SRY4 (Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LPA1 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.6e-30
Identity = 82/265 (30.94%), Postives = 131/265 (49.43%), Query Frame = 0


Query: 121 KIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDF 180
           K+ SEV +PFR VR FFY  F A+  +       +L+ A+     A  + +      I+ 
Sbjct: 187 KLISEVRAPFRGVRKFFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTGNAAINI 246

Query: 181 GAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGP 240
           G + +   L+  EN  +  Q+ +++R+E+LS L LR+  N+V+ +  LR   R VI AG 
Sbjct: 247 GGIVVMVSLFLWENKKEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGK 306

Query: 241 ESFIMEAFKSSEPFTERLLERGVLVVPL---------------------ATDVSTLKFEF 300
           +  +  A + ++ F   LL RGVL+VP+                     AT + ++  +F
Sbjct: 307 KETVTLAMQKADRFRTELLRRGVLLVPVVWGERKTPEIEKKGFGASSKAATSLPSIGEDF 366

Query: 301 DEREE--VKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG 360
           D R +  V     K +  ++   V   EW  W+ +Q+   GV+    VY+ LR+DGRVR 
Sbjct: 367 DTRAQSVVAQSKLKGEIRFKAETVSPGEWERWIRDQQISEGVNPGDDVYIILRLDGRVRR 426

Query: 361 SGVGYPPWNALVAQLPPVKGLWSGL 363
           SG G P W  +  +LPP+  + S L
Sbjct: 427 SGRGMPDWAEISKELPPMDDVLSKL 451

[Close]

BLAST of HG10012085 vs. ExPASy TrEMBL
Match: A0A6J1HGA1 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111463810 PE=4 SV=1)

HSP 1 Score: 606.7 bits (1563), Expect = 6.6e-170
Identity = 313/376 (83.24%), Postives = 331/376 (88.03%), Query Frame = 0


Query: 3   AANSGYRGGIETIPRNLLPLTNCETTSRVNAQFLESLTMVVSLSMPNISSCNNIARP--- 62
           AANSGYRG IET  RNLLPL   ETT  +N Q+LE   MVVS+++  I SCNN  RP   
Sbjct: 7   AANSGYRGAIETFLRNLLPLIIWETTLYINCQYLEWSIMVVSMAI--IPSCNNFGRPPHC 66

Query: 63  ----LHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSLRFLHYARRNLANFTCSAADKPE 122
                HN  + + CRR  CHVHR   SFN  PS+ DSLR+L Y RRNLA+ TCSA+DKPE
Sbjct: 67  SRTRSHNARNLKFCRRICCHVHRNPVSFNFGPSVADSLRYLQYRRRNLASVTCSASDKPE 126

Query: 123 ISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKG 182
           ISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDIL G
Sbjct: 127 ISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILNG 186

Query: 183 LGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLV 242
           LGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVI ISTLRGIARLV
Sbjct: 187 LGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVITISTLRGIARLV 246

Query: 243 ICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRL 302
           ICAGPESFIMEAFK+SEPFTERLLERGVLV+P ATD S+L FEFDEREE+KDITTKRKRL
Sbjct: 247 ICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSLNFEFDEREEMKDITTKRKRL 306

Query: 303 WRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPV 362
           WRLTPVYM++WSAWLD+QKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPV
Sbjct: 307 WRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPV 366

Query: 363 KGLWSGLLDGMDGRVL 372
           KGLWSGLLDGMDGRVL
Sbjct: 367 KGLWSGLLDGMDGRVL 380

[Close]

BLAST of HG10012085 vs. ExPASy TrEMBL
Match: A0A0A0L902 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G621430 PE=4 SV=1)

HSP 1 Score: 576.2 bits (1484), Expect = 9.5e-161
Identity = 298/338 (88.17%), Postives = 308/338 (91.12%), Query Frame = 0


Query: 41  MVVSLSMPNISSCNNIA-------RPLHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSL 100
           M VSL  P+ISS NNIA        P HN  DF+  RR  C VHRK  SF+SSP LP SL
Sbjct: 1   MAVSLFTPSISSFNNIAPPPHFSPTPSHNASDFKFRRRSYCRVHRKTVSFSSSPRLPVSL 60

Query: 101 RFLHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 160
           RFL Y RRNLANF CSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  RFLVYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 161 TQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 220
           TQLL ALANSSRA+EVPDIL+GLG+DFGAVALFAFLYFRENNAKNAQLARLSREESLSNL
Sbjct: 121 TQLLGALANSSRADEVPDILEGLGVDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 221 KLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVS 280
           KLRVDQNKVIPIS LRGIARLVICAGPESFI+EAFKSSEPFTERLLERGVLVVPLATDV+
Sbjct: 181 KLRVDQNKVIPISILRGIARLVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVT 240

Query: 281 TLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 340
           TL FEFD+REEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGV+SDSPVYLSLRMDG
Sbjct: 241 TLNFEFDDREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSDSPVYLSLRMDG 300

Query: 341 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 372
           RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]

BLAST of HG10012085 vs. ExPASy TrEMBL
Match: A0A5D3BG35 (Protein LOW PSII ACCUMULATION 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00670 PE=4 SV=1)

HSP 1 Score: 572.8 bits (1475), Expect = 1.1e-159
Identity = 297/338 (87.87%), Postives = 308/338 (91.12%), Query Frame = 0


Query: 41  MVVSLSMPNISSCNNIA-------RPLHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSL 100
           M VSLS   +SS NNIA        P HN PDF+ CRR   HVHRK  SF+SSP LP SL
Sbjct: 1   MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSL 60

Query: 101 RFLHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 160
           RF  Y RRNLAN+  SAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 161 TQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 220
           TQLL ALANSSRA+EVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL
Sbjct: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 221 KLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVS 280
           KLRVDQNKVIPISTLRGIARLVICAGPESF++EAFKSSEPFTE+LLERGVLVVPLATDV+
Sbjct: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT 240

Query: 281 TLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 340
           TL FEFDEREEVKDIT+KRK+LWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
Sbjct: 241 TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300

Query: 341 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 372
           RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]

BLAST of HG10012085 vs. ExPASy TrEMBL
Match: A0A1S3BHU5 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489822 PE=4 SV=1)

HSP 1 Score: 572.8 bits (1475), Expect = 1.1e-159
Identity = 297/338 (87.87%), Postives = 308/338 (91.12%), Query Frame = 0


Query: 41  MVVSLSMPNISSCNNIA-------RPLHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSL 100
           M VSLS   +SS NNIA        P HN PDF+ CRR   HVHRK  SF+SSP LP SL
Sbjct: 1   MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSL 60

Query: 101 RFLHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 160
           RF  Y RRNLAN+  SAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 161 TQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 220
           TQLL ALANSSRA+EVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL
Sbjct: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 221 KLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVS 280
           KLRVDQNKVIPISTLRGIARLVICAGPESF++EAFKSSEPFTE+LLERGVLVVPLATDV+
Sbjct: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT 240

Query: 281 TLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 340
           TL FEFDEREEVKDIT+KRK+LWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
Sbjct: 241 TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300

Query: 341 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 372
           RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]

BLAST of HG10012085 vs. ExPASy TrEMBL
Match: A0A6J1HWD0 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466857 PE=4 SV=1)

HSP 1 Score: 559.7 bits (1441), Expect = 9.2e-156
Identity = 286/338 (84.62%), Postives = 303/338 (89.64%), Query Frame = 0


Query: 41  MVVSLSMPNISSCNNIARP-------LHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSL 100
           MVVS+++  I SCNN  RP        HN  + + CRR  CHVHR   SFN  PS+ DSL
Sbjct: 1   MVVSMAI--IPSCNNFGRPPHCSRTRSHNAHNLKFCRRICCHVHRNPVSFNFGPSVADSL 60

Query: 101 RFLHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 160
           R+L Y RRNLA+ TCSA+DKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  RYLQYRRRNLASVTCSASDKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 161 TQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 220
           TQLLAALAN+SRAEEVPDIL GLGIDFGAVA FAFLYFRENNAKNAQLARLSREESLSNL
Sbjct: 121 TQLLAALANTSRAEEVPDILNGLGIDFGAVAFFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 221 KLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVS 280
           KLRVDQNKVI ISTLRGIARLVICAGPES IMEAFK+SEPFTERLLERGVLV+P ATD S
Sbjct: 181 KLRVDQNKVITISTLRGIARLVICAGPESLIMEAFKTSEPFTERLLERGVLVIPFATDAS 240

Query: 281 TLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 340
           +L FEFDEREE+KDITTKRKRLWRLTPVYM++WSAWLD+QKKLAGVSSDSPVYLSLRMDG
Sbjct: 241 SLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDG 300

Query: 341 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 372
           RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 336

[Close]

BLAST of HG10012085 vs. TAIR 10
Match: AT4G28740.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT1G02910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 367.5 bits (942), Expect = 1.3e-101
Identity = 199/346 (57.51%), Postives = 249/346 (71.97%), Query Frame = 0


Query: 28  TSRVNAQFLESLTMVVSLSMPNISSCNNIARPLHNTPDFRSCRRFRCHVHRKAASFNSSP 87
           T  V       +  +VS S   I  C+   + L+   +  S RR   H HR+   F+   
Sbjct: 6   TGEVAENLARPMATLVS-SQTYIYHCHISKQALYQAKESYSHRRISRHNHRERLDFSHR- 65

Query: 88  SLPDSLRFLHYARRNLANFTCSAADKP-EISSTAKIRSEVLSPFRSVRMFFYLTFIASGT 147
                L      +    N  C AAD+P EIS+ A+IRSEVLSPFRSVRMFFYL FIASG+
Sbjct: 66  --NHRLTITRKQQPLSFNTVCFAADEPSEISADARIRSEVLSPFRSVRMFFYLAFIASGS 125

Query: 148 LGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSR 207
           LGGLIAT++L+ ALAN +R+ EV +I+KGLG+D GA +LFAFLYF EN  KNAQ+ARLSR
Sbjct: 126 LGGLIATSRLIGALANPARSGEVLEIVKGLGVDIGAASLFAFLYFNENKTKNAQMARLSR 185

Query: 208 EESLSNLKLRVDQ-NKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLV 267
           EE+L  LK+RV++ NKVI +  LRG+ARLVICAGP  FI EAFK S+ +T+ L+ERGV+V
Sbjct: 186 EENLGKLKMRVEENNKVISVGDLRGVARLVICAGPAEFIEEAFKRSKEYTQGLVERGVVV 245

Query: 268 VPLATDVSTLKFEFDEREEV-KDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSP 327
           V  ATD ++   EFDE +   ++++ +RK+LWR+TPV++ EW  WL+EQKKLA VSSDSP
Sbjct: 246 VAYATDGNSPVLEFDETDIADEEMSQRRKKLWRVTPVFVPEWEKWLNEQKKLANVSSDSP 305

Query: 328 VYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRV 371
           VYLSLR+DGRVR SGVGYPPW A VAQLPPVKG+W+GLLDGMDGRV
Sbjct: 306 VYLSLRLDGRVRASGVGYPPWQAFVAQLPPVKGMWTGLLDGMDGRV 347

[Close]

BLAST of HG10012085 vs. TAIR 10
Match: AT1G02910.1 (tetratricopeptide repeat (TPR)-containing protein )

HSP 1 Score: 134.4 bits (337), Expect = 1.8e-31
Identity = 82/265 (30.94%), Postives = 131/265 (49.43%), Query Frame = 0


Query: 121 KIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDF 180
           K+ SEV +PFR VR FFY  F A+  +       +L+ A+     A  + +      I+ 
Sbjct: 187 KLISEVRAPFRGVRKFFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTGNAAINI 246

Query: 181 GAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGP 240
           G + +   L+  EN  +  Q+ +++R+E+LS L LR+  N+V+ +  LR   R VI AG 
Sbjct: 247 GGIVVMVSLFLWENKKEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGK 306

Query: 241 ESFIMEAFKSSEPFTERLLERGVLVVPL---------------------ATDVSTLKFEF 300
           +  +  A + ++ F   LL RGVL+VP+                     AT + ++  +F
Sbjct: 307 KETVTLAMQKADRFRTELLRRGVLLVPVVWGERKTPEIEKKGFGASSKAATSLPSIGEDF 366

Query: 301 DEREE--VKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG 360
           D R +  V     K +  ++   V   EW  W+ +Q+   GV+    VY+ LR+DGRVR 
Sbjct: 367 DTRAQSVVAQSKLKGEIRFKAETVSPGEWERWIRDQQISEGVNPGDDVYIILRLDGRVRR 426

Query: 361 SGVGYPPWNALVAQLPPVKGLWSGL 363
           SG G P W  +  +LPP+  + S L
Sbjct: 427 SGRGMPDWAEISKELPPMDDVLSKL 451

The following BLAST results are available for this feature:

BLAST of HG10012085 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888898.1	2.7e-170	93.99	protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida] >XP_038888899...	[more]
XP_022963501.1	1.4e-169	83.24	protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata] >XP_02296350...	[more]
XP_023554665.1	1.2e-168	82.71	protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo] >XP_...	[more]
KAG7011306.1	2.5e-163	78.54	Protein LOW PSII ACCUMULATION 1, chloroplastic, partial [Cucurbita argyrosperma ...	[more]
XP_004152010.1	2.0e-160	88.17	protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus] >KGN58323.1 hyp...	[more]

BLAST of HG10012085 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRY4	2.6e-30	30.94	Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of HG10012085 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HGA1	6.6e-170	83.24	protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A0A0L902	9.5e-161	88.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G621430 PE=4 SV=1	[more]
A0A5D3BG35	1.1e-159	87.87	Protein LOW PSII ACCUMULATION 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3BHU5	1.1e-159	87.87	protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1HWD0	9.2e-156	84.62	protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of HG10012085 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28740.1	1.3e-101	57.51	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G02910.1	1.8e-31	30.94	tetratricopeptide repeat (TPR)-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021883	Protein LOW PSII ACCUMULATION 1-like	PFAM	PF11998	DUF3493	coord: 117..194 e-value: 3.5E-27 score: 94.4
None	No IPR available	PANTHER	PTHR35498:SF1	LOW PSII ACCUMULATION-LIKE PROTEIN	coord: 72..369
None	No IPR available	PANTHER	PTHR35498	PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC	coord: 72..369

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10012085.1	HG10012085.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane