HG10012040 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10012040
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like
Location	Chr01: 16839997 .. 16840727 (+)
RNA-Seq Expression	HG10012040
Synteny	HG10012040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTCTCAGGTAGTAGCAGCCATAACATCATCATCAACAACAATAACAACAACATCAACCACCACCAACAAGCTCCACCAACGTCCTCTTCCAGCAGCAGATATGAGAATCAAAAGCGTCGCGATTGGAAAACTTTCGGTCAATATCTCAACAATCATCGCCCCCCGCTCGCCCTCTCGCGATGCAGCGGAGCTCATGTCCTTGAATTCCTCAGGTAGATAATAAAACTGCTCTCCCTCTACCTATTCGTGGACGTAGTTAACACACTCTTAGTGAATCACATAAAAACTCTGTTTCGATCTATCCTGCCTGTGAATTTCAAGTTATACAACAATTGTCTTTCTTTAATTAATTATATAAAAAGTTAGAACGTAAAATTTTGACTCGGGTTCTCGACAGGTATCTAGATCAATTTGGAAAGACGAAAGTGCATACGGCTATTTGCCCTTTCTACGGGCTGCCGAACCCTCCGGCACCGTGCCCGTGCCCTCTTCGACAGGCATGGGGGAGCCTCGACGCGTTGGTCGGACGGCTTCGAGCGGCTTTCGAAGAGAATGGTGGGAAACCAGAAGCCAATCCATTTGGGGCTAGAGCTGTGAGATTGTATCTTCGTGAGGTTCGTGATTTGCAGTCAAAAGCAAGAGGAATTAGCTATGAGAAGAAAAGAAAGCGCCCACCTTCACAATTGCCTTTAACACAACAAACATCTCATGGTACTACTTCATAA

mRNA sequence

ATGGATTTCTCAGGTAGTAGCAGCCATAACATCATCATCAACAACAATAACAACAACATCAACCACCACCAACAAGCTCCACCAACGTCCTCTTCCAGCAGCAGATATGAGAATCAAAAGCGTCGCGATTGGAAAACTTTCGGTCAATATCTCAACAATCATCGCCCCCCGCTCGCCCTCTCGCGATGCAGCGGAGCTCATGTCCTTGAATTCCTCAGGTATCTAGATCAATTTGGAAAGACGAAAGTGCATACGGCTATTTGCCCTTTCTACGGGCTGCCGAACCCTCCGGCACCGTGCCCGTGCCCTCTTCGACAGGCATGGGGGAGCCTCGACGCGTTGGTCGGACGGCTTCGAGCGGCTTTCGAAGAGAATGGTGGGAAACCAGAAGCCAATCCATTTGGGGCTAGAGCTGTGAGATTGTATCTTCGTGAGGTTCGTGATTTGCAGTCAAAAGCAAGAGGAATTAGCTATGAGAAGAAAAGAAAGCGCCCACCTTCACAATTGCCTTTAACACAACAAACATCTCATGGTACTACTTCATAA

Coding sequence (CDS)

ATGGATTTCTCAGGTAGTAGCAGCCATAACATCATCATCAACAACAATAACAACAACATCAACCACCACCAACAAGCTCCACCAACGTCCTCTTCCAGCAGCAGATATGAGAATCAAAAGCGTCGCGATTGGAAAACTTTCGGTCAATATCTCAACAATCATCGCCCCCCGCTCGCCCTCTCGCGATGCAGCGGAGCTCATGTCCTTGAATTCCTCAGGTATCTAGATCAATTTGGAAAGACGAAAGTGCATACGGCTATTTGCCCTTTCTACGGGCTGCCGAACCCTCCGGCACCGTGCCCGTGCCCTCTTCGACAGGCATGGGGGAGCCTCGACGCGTTGGTCGGACGGCTTCGAGCGGCTTTCGAAGAGAATGGTGGGAAACCAGAAGCCAATCCATTTGGGGCTAGAGCTGTGAGATTGTATCTTCGTGAGGTTCGTGATTTGCAGTCAAAAGCAAGAGGAATTAGCTATGAGAAGAAAAGAAAGCGCCCACCTTCACAATTGCCTTTAACACAACAAACATCTCATGGTACTACTTCATAA

Protein sequence

MDFSGSSSHNIIINNNNNNINHHQQAPPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTSHGTTS

Homology

[Close]

BLAST of HG10012040 vs. NCBI nr
Match: XP_004152053.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucumis sativus] >KGN57900.1 hypothetical protein Csa_011754 [Cucumis sativus])

HSP 1 Score: 349.7 bits (896), Expect = 1.5e-92
Identity = 172/181 (95.03%), Postives = 174/181 (96.13%), Query Frame = 0


Query: 1   MDFSGSSSHNIIINNNNNNINHHQQAPPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL 60
           MDFS  SSHNIIINNNNN IN HQQ  PTSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL
Sbjct: 1   MDFSSGSSHNIIINNNNNTIN-HQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL 60

Query: 61  SRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 120
           SRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA
Sbjct: 61  SRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 120

Query: 121 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTSHGTT 180
           AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQT+HG +
Sbjct: 121 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTTHGAS 180

Query: 181 S 182
           S
Sbjct: 181 S 180

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BLAST of HG10012040 vs. NCBI nr
Match: XP_008447415.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo] >KAA0038043.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo var. makuwa] >TYK20560.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 348.2 bits (892), Expect = 4.3e-92
Identity = 171/181 (94.48%), Postives = 175/181 (96.69%), Query Frame = 0


Query: 1   MDFSGSSSHNIIINNNNNNINHHQQAPPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL 60
           MDFS SSSHNIIIN+NNN IN HQQ  PTSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL
Sbjct: 1   MDFSSSSSHNIIINHNNNTIN-HQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL 60

Query: 61  SRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 120
           SRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA
Sbjct: 61  SRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 120

Query: 121 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTSHGTT 180
           AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP+QLPLTQQT+HG +
Sbjct: 121 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPLTQQTTHGAS 180

Query: 181 S 182
           S
Sbjct: 181 S 180

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BLAST of HG10012040 vs. NCBI nr
Match: XP_038888358.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Benincasa hispida] >XP_038888359.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Benincasa hispida])

HSP 1 Score: 344.7 bits (883), Expect = 4.7e-91
Identity = 173/183 (94.54%), Postives = 174/183 (95.08%), Query Frame = 0


Query: 1   MDFSGSSSHNIIINNNNNNINHH-QQAPPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLA 60
           MDFS SSSHNIIINNNNN+INHH QQA  TSSSSSRYENQKRRDWKTFGQYLNNHRPPLA
Sbjct: 1   MDFSSSSSHNIIINNNNNSINHHQQQAATTSSSSSRYENQKRRDWKTFGQYLNNHRPPLA 60

Query: 61  LSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLR 120
           LSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLR
Sbjct: 61  LSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLR 120

Query: 121 AAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP-SQLPLTQQTSHG 180
           AAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP SQLPLT  TSHG
Sbjct: 121 AAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSSQLPLTHHTSHG 180

Query: 181 TTS 182
             S
Sbjct: 181 EPS 183

[Close]

BLAST of HG10012040 vs. NCBI nr
Match: KAG7036313.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 320.9 bits (821), Expect = 7.3e-84
Identity = 158/171 (92.40%), Postives = 163/171 (95.32%), Query Frame = 0


Query: 1   MDFSGSSSHNIIINNNNNNINHHQQAPPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL 60
           MDFSGSSS++IIINNNNN +N HQ +   SSSSSRYENQKRRDWKTFGQYLNNHRPPLAL
Sbjct: 1   MDFSGSSSNSIIINNNNNAMN-HQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPPLAL 60

Query: 61  SRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 120
           SRCSGAHVLEFLRYLDQFGKTKVHT ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA
Sbjct: 61  SRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 120

Query: 121 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPL 172
           AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISY+KKRKRPPSQ PL
Sbjct: 121 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPL 170

[Close]

BLAST of HG10012040 vs. NCBI nr
Match: XP_022931179.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita moschata])

HSP 1 Score: 318.9 bits (816), Expect = 2.8e-83
Identity = 157/174 (90.23%), Postives = 163/174 (93.68%), Query Frame = 0


Query: 1   MDFSGSSSHNIII---NNNNNNINHHQQAPPTSSSSSRYENQKRRDWKTFGQYLNNHRPP 60
           MDFSGSSS++I+I   NNNNNN  +HQ +   SSSSSRYENQKRRDWKTFGQYLNNHRPP
Sbjct: 1   MDFSGSSSNSIVIINNNNNNNNAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP 60

Query: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120
           LALSRCSGAHVLEFLRYLDQFGKTKVHT ICPFYGLPNPPAPCPCPLRQAWGSLDALVGR
Sbjct: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120

Query: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPL 172
           LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISY+KKRKRPPSQ PL
Sbjct: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPL 174

[Close]

BLAST of HG10012040 vs. ExPASy Swiss-Prot
Match: O82268 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.2e-68
Identity = 132/182 (72.53%), Postives = 147/182 (80.77%), Query Frame = 0


Query: 3   FSGSSSHNIIINNNNN--NINHHQQAPPTSSS------SSRYENQKRRDWKTFGQYLNNH 62
           + G ++ NII NN+++       +   P SSS      SSRYENQKRRDW TFGQYL NH
Sbjct: 14  YGGVTNLNIISNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNH 73

Query: 63  RPPLALSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDAL 122
           RPPL+LSRCSGAHVLEFLRYLDQFGKTKVHT IC FYG PNPPAPCPCPLRQAWGSLDAL
Sbjct: 74  RPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDAL 133

Query: 123 VGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQ 177
           +GRLRAAFEENGGKPE NPFGARAVRLYLREVRD+QSKARG+SYEKK+++ P     T  
Sbjct: 134 IGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRPLPSSSTSS 193

[Close]

BLAST of HG10012040 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 2.0e-68
Identity = 123/141 (87.23%), Postives = 128/141 (90.78%), Query Frame = 0


Query: 34  SRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGL 93
           SRYENQKRRDW TFGQYL NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHT +CPF+G 
Sbjct: 47  SRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGH 106

Query: 94  PNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKA 153
           PNPPAPC CPLRQAWGSLDAL+GRLRAAFEENGG PE NPFGARAVRLYLREVRD Q+KA
Sbjct: 107 PNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKA 166

Query: 154 RGISYE-KKRKRPPSQLPLTQ 174
           RGISYE KKRKRPP  LP  Q
Sbjct: 167 RGISYEKKKRKRPPPPLPPAQ 187

[Close]

BLAST of HG10012040 vs. ExPASy Swiss-Prot
Match: A2YG32 (Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 4.2e-66
Identity = 120/141 (85.11%), Postives = 129/141 (91.49%), Query Frame = 0


Query: 34  SRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGL 93
           SRYE+QKRRDW TFGQYL NHRPPL LSRCSGAHVLEFLRYLDQFGKTKVH A CPF+G 
Sbjct: 21  SRYESQKRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAAGCPFFGH 80

Query: 94  PNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKA 153
           P+PPAPCPCPLRQAWGSLDALVGRLRAAFEE+GG+PEANPFGARAVRLYLREVRD Q+KA
Sbjct: 81  PSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPEANPFGARAVRLYLREVRDSQAKA 140

Query: 154 RGISYEKK-RKRPPSQLPLTQ 174
           RGI+YEKK RKRPP+    +Q
Sbjct: 141 RGIAYEKKRRKRPPTSSSSSQ 161

[Close]

BLAST of HG10012040 vs. ExPASy Swiss-Prot
Match: Q652I1 (Protein G1-like2 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L2 PE=1 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 4.2e-66
Identity = 120/141 (85.11%), Postives = 129/141 (91.49%), Query Frame = 0


Query: 34  SRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGL 93
           SRYE+QKRRDW TFGQYL NHRPPL LSRCSGAHVLEFLRYLDQFGKTKVH A CPF+G 
Sbjct: 21  SRYESQKRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAAGCPFFGH 80

Query: 94  PNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKA 153
           P+PPAPCPCPLRQAWGSLDALVGRLRAAFEE+GG+PEANPFGARAVRLYLREVRD Q+KA
Sbjct: 81  PSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPEANPFGARAVRLYLREVRDSQAKA 140

Query: 154 RGISYEKK-RKRPPSQLPLTQ 174
           RGI+YEKK RKRPP+    +Q
Sbjct: 141 RGIAYEKKRRKRPPTSSSSSQ 161

[Close]

BLAST of HG10012040 vs. ExPASy Swiss-Prot
Match: Q6NNI3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana OX=3702 GN=LSH1 PE=1 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.6e-65
Identity = 124/164 (75.61%), Postives = 135/164 (82.32%), Query Frame = 0


Query: 10  NIIINNNNNNINHHQQAPPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVL 69
           ++I +  N N N   Q  P   SSSRYENQKRRDW TF QYL NHRPPL+L  CSGAHVL
Sbjct: 2   DLISHQPNKNPNSSTQLTP--PSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVL 61

Query: 70  EFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKP 129
           EFLRYLDQFGKTKVH   C F+GLPNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG P
Sbjct: 62  EFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPP 121

Query: 130 EANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQ 174
           EANPFG+RAVRL+LREVRD Q+KARG+SYEKKRKR   Q P TQ
Sbjct: 122 EANPFGSRAVRLFLREVRDFQAKARGVSYEKKRKRVNRQKPQTQ 163

[Close]

BLAST of HG10012040 vs. ExPASy TrEMBL
Match: A0A0A0L7E1 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G383760 PE=3 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 7.1e-93
Identity = 172/181 (95.03%), Postives = 174/181 (96.13%), Query Frame = 0


Query: 1   MDFSGSSSHNIIINNNNNNINHHQQAPPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL 60
           MDFS  SSHNIIINNNNN IN HQQ  PTSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL
Sbjct: 1   MDFSSGSSHNIIINNNNNTIN-HQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL 60

Query: 61  SRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 120
           SRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA
Sbjct: 61  SRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 120

Query: 121 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTSHGTT 180
           AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQT+HG +
Sbjct: 121 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTTHGAS 180

Query: 181 S 182
           S
Sbjct: 181 S 180

[Close]

BLAST of HG10012040 vs. ExPASy TrEMBL
Match: A0A5D3DAV8 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001490 PE=3 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 2.1e-92
Identity = 171/181 (94.48%), Postives = 175/181 (96.69%), Query Frame = 0


Query: 1   MDFSGSSSHNIIINNNNNNINHHQQAPPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL 60
           MDFS SSSHNIIIN+NNN IN HQQ  PTSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL
Sbjct: 1   MDFSSSSSHNIIINHNNNTIN-HQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL 60

Query: 61  SRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 120
           SRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA
Sbjct: 61  SRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 120

Query: 121 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTSHGTT 180
           AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP+QLPLTQQT+HG +
Sbjct: 121 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPLTQQTTHGAS 180

Query: 181 S 182
           S
Sbjct: 181 S 180

[Close]

BLAST of HG10012040 vs. ExPASy TrEMBL
Match: A0A1S3BGU6 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo OX=3656 GN=LOC103489867 PE=3 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 2.1e-92
Identity = 171/181 (94.48%), Postives = 175/181 (96.69%), Query Frame = 0


Query: 1   MDFSGSSSHNIIINNNNNNINHHQQAPPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL 60
           MDFS SSSHNIIIN+NNN IN HQQ  PTSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL
Sbjct: 1   MDFSSSSSHNIIINHNNNTIN-HQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL 60

Query: 61  SRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 120
           SRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA
Sbjct: 61  SRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 120

Query: 121 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTSHGTT 180
           AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP+QLPLTQQT+HG +
Sbjct: 121 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPLTQQTTHGAS 180

Query: 181 S 182
           S
Sbjct: 181 S 180

[Close]

BLAST of HG10012040 vs. ExPASy TrEMBL
Match: A0A6J1ETL1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita moschata OX=3662 GN=LOC111437437 PE=3 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.3e-83
Identity = 157/174 (90.23%), Postives = 163/174 (93.68%), Query Frame = 0


Query: 1   MDFSGSSSHNIII---NNNNNNINHHQQAPPTSSSSSRYENQKRRDWKTFGQYLNNHRPP 60
           MDFSGSSS++I+I   NNNNNN  +HQ +   SSSSSRYENQKRRDWKTFGQYLNNHRPP
Sbjct: 1   MDFSGSSSNSIVIINNNNNNNNAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP 60

Query: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120
           LALSRCSGAHVLEFLRYLDQFGKTKVHT ICPFYGLPNPPAPCPCPLRQAWGSLDALVGR
Sbjct: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120

Query: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPL 172
           LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISY+KKRKRPPSQ PL
Sbjct: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPL 174

[Close]

BLAST of HG10012040 vs. ExPASy TrEMBL
Match: A0A6J1DS94 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Momordica charantia OX=3673 GN=LOC111022718 PE=3 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 3.0e-83
Identity = 157/178 (88.20%), Postives = 160/178 (89.89%), Query Frame = 0


Query: 1   MDFSGSSSHNIIINNNNNNINHHQQAPPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL 60
           M+FS SS  N++ NNN      H Q   TSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL
Sbjct: 1   MEFSSSSGSNMMNNNN------HLQGAATSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL 60

Query: 61  SRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 120
           SRCSGAHVLEFLRYLDQFGKTKVH  ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA
Sbjct: 61  SRCSGAHVLEFLRYLDQFGKTKVHAPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 120

Query: 121 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTSHG 179
           AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPL QQT HG
Sbjct: 121 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLPQQTPHG 172

[Close]

BLAST of HG10012040 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 260.8 bits (665), Expect = 8.3e-70
Identity = 132/182 (72.53%), Postives = 147/182 (80.77%), Query Frame = 0


Query: 3   FSGSSSHNIIINNNNN--NINHHQQAPPTSSS------SSRYENQKRRDWKTFGQYLNNH 62
           + G ++ NII NN+++       +   P SSS      SSRYENQKRRDW TFGQYL NH
Sbjct: 14  YGGVTNLNIISNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNH 73

Query: 63  RPPLALSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDAL 122
           RPPL+LSRCSGAHVLEFLRYLDQFGKTKVHT IC FYG PNPPAPCPCPLRQAWGSLDAL
Sbjct: 74  RPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDAL 133

Query: 123 VGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQ 177
           +GRLRAAFEENGGKPE NPFGARAVRLYLREVRD+QSKARG+SYEKK+++ P     T  
Sbjct: 134 IGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRPLPSSSTSS 193

[Close]

BLAST of HG10012040 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 260.0 bits (663), Expect = 1.4e-69
Identity = 123/141 (87.23%), Postives = 128/141 (90.78%), Query Frame = 0


Query: 34  SRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGL 93
           SRYENQKRRDW TFGQYL NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHT +CPF+G 
Sbjct: 47  SRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGH 106

Query: 94  PNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKA 153
           PNPPAPC CPLRQAWGSLDAL+GRLRAAFEENGG PE NPFGARAVRLYLREVRD Q+KA
Sbjct: 107 PNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKA 166

Query: 154 RGISYE-KKRKRPPSQLPLTQ 174
           RGISYE KKRKRPP  LP  Q
Sbjct: 167 RGISYEKKKRKRPPPPLPPAQ 187

[Close]

BLAST of HG10012040 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 250.4 bits (638), Expect = 1.1e-66
Identity = 124/164 (75.61%), Postives = 135/164 (82.32%), Query Frame = 0


Query: 10  NIIINNNNNNINHHQQAPPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVL 69
           ++I +  N N N   Q  P   SSSRYENQKRRDW TF QYL NHRPPL+L  CSGAHVL
Sbjct: 2   DLISHQPNKNPNSSTQLTP--PSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVL 61

Query: 70  EFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKP 129
           EFLRYLDQFGKTKVH   C F+GLPNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG P
Sbjct: 62  EFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPP 121

Query: 130 EANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQ 174
           EANPFG+RAVRL+LREVRD Q+KARG+SYEKKRKR   Q P TQ
Sbjct: 122 EANPFGSRAVRLFLREVRDFQAKARGVSYEKKRKRVNRQKPQTQ 163

[Close]

BLAST of HG10012040 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 242.3 bits (617), Expect = 3.1e-64
Identity = 121/174 (69.54%), Postives = 137/174 (78.74%), Query Frame = 0


Query: 14  NNNNNNINHHQQAPPTSS---SSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLE 73
           NN N N +   Q P + S   SSSRYENQKRRDW TF QYL NH PPL+L+ CSGAHVL+
Sbjct: 9   NNRNPNTSLSTQTPSSFSSPPSSSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLD 68

Query: 74  FLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPE 133
           FLRYLDQFGKTKVH   C F+GLPNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG PE
Sbjct: 69  FLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPE 128

Query: 134 ANPFGARAVRLYLREVRDLQSKARGISYEKKRKR----------PPSQLPLTQQ 175
            +PFG+R+VR++LREVRD Q+K+RG+SYEKKRKR          P SQ PL QQ
Sbjct: 129 TSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNKQITQSQPQSQPPLPQQ 182

[Close]

BLAST of HG10012040 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 232.3 bits (591), Expect = 3.2e-61
Identity = 107/143 (74.83%), Postives = 127/143 (88.81%), Query Frame = 0


Query: 26  APPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHT 85
           +PP  ++ SRYE+QKRRDW TF QYL NH+PPLALSRCSGAHV+EFL+YLDQFGKTKVH 
Sbjct: 24  SPP--ATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHV 83

Query: 86  AICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLRE 145
           A CP++G   PP+PC CPL+QAWGSLDAL+GRLRAA+EENGG+P++NPF ARAVR+YLRE
Sbjct: 84  AACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLRE 143

Query: 146 VRDLQSKARGISYE-KKRKRPPS 168
           VR+ Q+KARGI YE KKRKRPP+
Sbjct: 144 VRESQAKARGIPYEKKKRKRPPT 164

The following BLAST results are available for this feature:

BLAST of HG10012040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152053.1	1.5e-92	95.03	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucumis sativus] >KGN57900.1 hypothe...	[more]
XP_008447415.1	4.3e-92	94.48	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo] >KAA00...	[more]
XP_038888358.1	4.7e-91	94.54	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Benincasa hispida] >XP_03888835...	[more]
KAG7036313.1	7.3e-84	92.40	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022931179.1	2.8e-83	90.23	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita moschata]	[more]

BLAST of HG10012040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82268	1.2e-68	72.53	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q9LW68	2.0e-68	87.23	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2YG32	4.2e-66	85.11	Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1	[more]
Q652I1	4.2e-66	85.11	Protein G1-like2 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L2 PE=1 SV=1	[more]
Q6NNI3	1.6e-65	75.61	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]

BLAST of HG10012040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7E1	7.1e-93	95.03	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G383760 PE=3 S...	[more]
A0A5D3DAV8	2.1e-92	94.48	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3BGU6	2.1e-92	94.48	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1ETL1	1.3e-83	90.23	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1DS94	3.0e-83	88.20	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Momordica charantia OX=3673 G...	[more]

BLAST of HG10012040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31160.1	8.3e-70	72.53	Protein of unknown function (DUF640)	[more]
AT3G23290.2	1.4e-69	87.23	Protein of unknown function (DUF640)	[more]
AT5G28490.1	1.1e-66	75.61	Protein of unknown function (DUF640)	[more]
AT3G04510.1	3.1e-64	69.54	Protein of unknown function (DUF640)	[more]
AT1G07090.1	3.2e-61	74.83	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 25..148 e-value: 4.4E-65 score: 217.6
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 35..162 score: 82.885216
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 167..181
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 154..181
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..39
None	No IPR available	PANTHER	PTHR31165:SF89	G1-LIKE PROTEIN	coord: 14..176
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 14..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10012040.1	HG10012040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus