HG10012010 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10012010
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr01: 16510721 .. 16510996 (-)
RNA-Seq ExpressionHG10012010
SyntenyHG10012010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATCCAATTCACTTTCTTTTTAGCCATTTTGCTTCTTCTTGCCAATGCTCATCAGCTCCAAAGTTGTAGAACCATGAAAGATGATCAACAAAAATGGTCCATGCTGCTTCAACAATCGCTGCAGAGGGCACCGGTACCTCCGTCCGGCCGAGACGACGGCACCAACATTCCGGTACCGCTCGGGCAACAGGCCTTCGCCGGAAAGTTCATGGCGCCACCGGCCTACGCCTATCCAGATCATCTAATGGTTCCTTCTGGTGTGGCCTTTTGA

mRNA sequence

ATGAAGATCCAATTCACTTTCTTTTTAGCCATTTTGCTTCTTCTTGCCAATGCTCATCAGCTCCAAAGTTGTAGAACCATGAAAGATGATCAACAAAAATGGTCCATGCTGCTTCAACAATCGCTGCAGAGGGCACCGGTACCTCCGTCCGGCCGAGACGACGGCACCAACATTCCGGTACCGCTCGGGCAACAGGCCTTCGCCGGAAAGTTCATGGCGCCACCGGCCTACGCCTATCCAGATCATCTAATGGTTCCTTCTGGTGTGGCCTTTTGA

Coding sequence (CDS)

ATGAAGATCCAATTCACTTTCTTTTTAGCCATTTTGCTTCTTCTTGCCAATGCTCATCAGCTCCAAAGTTGTAGAACCATGAAAGATGATCAACAAAAATGGTCCATGCTGCTTCAACAATCGCTGCAGAGGGCACCGGTACCTCCGTCCGGCCGAGACGACGGCACCAACATTCCGGTACCGCTCGGGCAACAGGCCTTCGCCGGAAAGTTCATGGCGCCACCGGCCTACGCCTATCCAGATCATCTAATGGTTCCTTCTGGTGTGGCCTTTTGA

Protein sequence

MKIQFTFFLAILLLLANAHQLQSCRTMKDDQQKWSMLLQQSLQRAPVPPSGRDDGTNIPVPLGQQAFAGKFMAPPAYAYPDHLMVPSGVAF
Homology
BLAST of HG10012010 vs. NCBI nr
Match: KAG6571506.1 (hypothetical protein SDJN03_28234, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154.1 bits (388), Expect = 5.9e-34
Identity = 74/90 (82.22%), Postives = 81/90 (90.00%), Query Frame = 0

Query: 1  MKIQFTFFLAILLLLANAHQLQSCRTMKDDQQKWSMLLQQSLQRAPVPPSGRDDGTNIPV 60
          MKIQF F LAI L+LAN HQLQSCR MK DQQKWSM+LQQSLQRAPVPPSG+D GT IPV
Sbjct: 1  MKIQFAFILAIFLVLANVHQLQSCRIMKVDQQKWSMVLQQSLQRAPVPPSGKDGGTTIPV 60

Query: 61 PLGQQAFAGKFMAPPAYAYPDHLMVPSGVA 91
          PLG++AFAGKFMAPPA AYPDHL++PSGVA
Sbjct: 61 PLGERAFAGKFMAPPADAYPDHLLIPSGVA 90

BLAST of HG10012010 vs. NCBI nr
Match: KAA0025373.1 (hypothetical protein E6C27_scaffold1204G00600 [Cucumis melo var. makuwa] >TYJ95702.1 hypothetical protein E5676_scaffold63958G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 148.7 bits (374), Expect = 2.5e-32
Identity = 74/90 (82.22%), Postives = 79/90 (87.78%), Query Frame = 0

Query: 1  MKIQFTFFLAILLLLANAHQLQSCRTMKDDQQKWSMLLQQSLQRAPVPPSGRDDGTNIPV 60
          MKIQFTFF AIL+LLANAH LQSCRTMKDDQ+KWSML+QQSLQRAPVPPS RD  TNIPV
Sbjct: 1  MKIQFTFFFAILVLLANAHHLQSCRTMKDDQRKWSMLIQQSLQRAPVPPSTRDGDTNIPV 60

Query: 61 PLGQQAFAGKFMAPPAYAYPDHLMVPSGVA 91
          PLGQQAFAGK   PPA+  PD+L VPSGVA
Sbjct: 61 PLGQQAFAGKSTVPPAFPDPDNLEVPSGVA 90

BLAST of HG10012010 vs. NCBI nr
Match: KAG6571505.1 (hypothetical protein SDJN03_28233, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.7 bits (330), Expect = 3.1e-27
Identity = 65/90 (72.22%), Postives = 75/90 (83.33%), Query Frame = 0

Query: 1  MKIQFTFFLAILLLLANAHQLQSCRTMKDDQQKWSMLLQQSLQRAPVPPSGRDDGTNIPV 60
          MKIQF F LAI++LLANAHQLQSCRTMKDD+QKWS+LLQQSLQRAPVPPS ++ GT IPV
Sbjct: 1  MKIQFAFLLAIVVLLANAHQLQSCRTMKDDRQKWSILLQQSLQRAPVPPSAKNGGTTIPV 60

Query: 61 PLGQQAFAGKFMAPPAYAYPDHLMVPSGVA 91
          PLGQ+AF GK    PA++Y   + VP GVA
Sbjct: 61 PLGQRAFVGKSTPSPAHSYHHQVPVPFGVA 90

BLAST of HG10012010 vs. NCBI nr
Match: KAG6571503.1 (hypothetical protein SDJN03_28231, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124.8 bits (312), Expect = 3.8e-25
Identity = 63/91 (69.23%), Postives = 75/91 (82.42%), Query Frame = 0

Query: 1  MKIQFTFFLAILLLLANAHQLQSCRTMKDDQQKWS-MLLQQSLQRAPVPPSGRDDGTNIP 60
          MKIQF F LAIL++LANAHQLQSCRTMK+D+QKWS +LLQQSLQRAPVPPS ++ GT IP
Sbjct: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDRQKWSILLLQQSLQRAPVPPSAKNGGTTIP 60

Query: 61 VPLGQQAFAGKFMAPPAYAYPDHLMVPSGVA 91
          VPLGQ++F GK    PA++Y   + VP GVA
Sbjct: 61 VPLGQRSFVGKSTPSPAHSYHHQVPVPFGVA 91

BLAST of HG10012010 vs. NCBI nr
Match: KAG6571504.1 (hypothetical protein SDJN03_28232, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.5 bits (306), Expect = 1.9e-24
Identity = 62/91 (68.13%), Postives = 73/91 (80.22%), Query Frame = 0

Query: 1  MKIQFTFFLAILLLLANAHQLQSCRTMKDDQQKWS-MLLQQSLQRAPVPPSGRDDGTNIP 60
          MKIQF F LAIL++LANAHQLQSCRTMK+D QKWS +LLQQSLQRAPVPP+ ++ GT IP
Sbjct: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDPQKWSILLLQQSLQRAPVPPNAKNGGTTIP 60

Query: 61 VPLGQQAFAGKFMAPPAYAYPDHLMVPSGVA 91
           PLGQ+AF GK    PA++Y   + VP GVA
Sbjct: 61 TPLGQRAFVGKSTPSPAHSYHHQVPVPLGVA 91

BLAST of HG10012010 vs. ExPASy TrEMBL
Match: A0A5D3B777 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold63958G00010 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-32
Identity = 74/90 (82.22%), Postives = 79/90 (87.78%), Query Frame = 0

Query: 1  MKIQFTFFLAILLLLANAHQLQSCRTMKDDQQKWSMLLQQSLQRAPVPPSGRDDGTNIPV 60
          MKIQFTFF AIL+LLANAH LQSCRTMKDDQ+KWSML+QQSLQRAPVPPS RD  TNIPV
Sbjct: 1  MKIQFTFFFAILVLLANAHHLQSCRTMKDDQRKWSMLIQQSLQRAPVPPSTRDGDTNIPV 60

Query: 61 PLGQQAFAGKFMAPPAYAYPDHLMVPSGVA 91
          PLGQQAFAGK   PPA+  PD+L VPSGVA
Sbjct: 61 PLGQQAFAGKSTVPPAFPDPDNLEVPSGVA 90

BLAST of HG10012010 vs. ExPASy TrEMBL
Match: A0A0A0LCY5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G393150 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.4e-20
Identity = 57/82 (69.51%), Postives = 65/82 (79.27%), Query Frame = 0

Query: 1  MKIQFTFFLAILLLLANAHQLQSCRTMKDDQQKWSM---LLQQSLQRAPVPPSGRDDGTN 60
          MKIQF+F LAIL+LLAN H LQSCRT+KDDQQ WS+   LLQQSLQR PVPPS ++  TN
Sbjct: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60

Query: 61 IPVPLGQQAFAGKFMAPPAYAY 80
          IPVP+GQ+AFAGK  A  A  Y
Sbjct: 61 IPVPVGQRAFAGKTSAALARNY 82

BLAST of HG10012010 vs. ExPASy TrEMBL
Match: A0A7J7CYF4 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW12G00102 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.8e-04
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 0

Query: 9  LAILLLLANAHQLQSCRTMKDDQQKWSMLLQQSLQRAPVPPSGRDDGTNIPVPLG----- 68
          + + +LL   ++ Q+ R +  D    ++L+ QSLQR PV PSG +  T IP   G     
Sbjct: 16 MILQILLMQPNEAQASRVLDQD----NVLMLQSLQRGPVRPSGPNGCTYIPGRGGAPCTS 75

Query: 69 QQAFAGKFMAPPAYAYPDHLMVPSGVA 91
          Q+ FAG+ +A P  AYPD+LMVP GVA
Sbjct: 76 QRGFAGRAVAAP-NAYPDNLMVPFGVA 97

BLAST of HG10012010 vs. ExPASy TrEMBL
Match: A0A061DNY2 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_004138 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.3e-04
Identity = 36/84 (42.86%), Postives = 48/84 (57.14%), Query Frame = 0

Query: 5  FTFFLAILLLLANAHQLQSCRTMKDDQQKWSMLLQQSLQRAPVPPSGRDDGTNIPVPLG- 64
          F F  A+  LL + H  ++ R + +D     +L+ QSLQ+ PVPPSGR+  TNIP   G 
Sbjct: 7  FVFVTAVNFLL-STHPCEASRLLNED-----VLVLQSLQKGPVPPSGRNGCTNIPGRGGP 66

Query: 65 ----QQAFAGKFMAPPAYAYPDHL 84
               +AFAG  MAPP    PDH+
Sbjct: 67 PCTSHRAFAGHIMAPPR-LQPDHM 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6571506.15.9e-3482.22hypothetical protein SDJN03_28234, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0025373.12.5e-3282.22hypothetical protein E6C27_scaffold1204G00600 [Cucumis melo var. makuwa] >TYJ957... [more]
KAG6571505.13.1e-2772.22hypothetical protein SDJN03_28233, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571503.13.8e-2569.23hypothetical protein SDJN03_28231, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571504.11.9e-2468.13hypothetical protein SDJN03_28232, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3B7771.2e-3282.22Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LCY51.4e-2069.51Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G393150 PE=4 SV=1[more]
A0A7J7CYF41.8e-0442.53Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW12G00102 ... [more]
A0A061DNY25.3e-0442.86Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_004138 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10012010.1HG10012010.1mRNA