HG10012001 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10012001
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Mitochondrial transcription termination factor family protein
Location	Chr01: 16425386 .. 16426387 (+)
RNA-Seq Expression	HG10012001
Synteny	HG10012001

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACTAAAAATTGCACAAACAACATCAAAACACGTAGATTTTAAAAGCCAAACCGTTCCAGATTCTGTAGTTCATTTCTTCAAAAGTCTTGGGTTTACAAATTCCGACATTTGTCTCATTATCAAGAGACGCCCAACTCTTCTTTGCTCCAATCCATCAAAAACATTGGTCCCTAAAATTTCTTTTCTACATGAAGTTGGCTTTTCTAAACAACAGATGAAAAAACTACTTTGCATGTTTCCCTCTGTTTTACATCAAAGTTTATATCAAAACATCATTCCTTCATTTGATTTTGTTGAAAAATTTCTTAATTCTAACAAGGAAGCTGCTGTTCAGGTCCTAACACAATGTGGGACTATTTTTAATCTTAATCTTCAAACCACATTACAAGCCAACATCGAATATCTTGAAAAATCTAAAGTTCCATCCAAACATATCCAAACCTTTTTTTTTTTTCGCTATCCTCATACACTTATGATTAATTCCCAAAGATTTAAAGCTACAGTAGATATTGTTAAGAATATGGGGATGGATCCGAATATGATGAAGTTTGTGAATACTGTTCGATGTGTGATGAGGGTGAGGAAAGATCTTTGGAAAAAGAAGAATGAAGCATACAAAAAATGGGGGTTGACGGAGGATGAAGTGTACGGGGCATTCAAAAAAAATATCACGATAATGCTATCATCGGTCGACAAAATTAATTCCATGATGGATTTCTTTGTCAATAAGGCAGGATGTCAAGCTTCCATTCTCCTAGACTTCCCTGATTTGATAAACTTCAGTGTGGAGGGAAGACTAGTTCCGAGAAATGTCGTTTTTCAAGCTTTGAAGTCTAAGGGCCTCATTACAAAAAATGTAATTAGAATTGGACACATTTTTACATCAGCTGAAAAGAAATTCAAAGGTAGATTTATCGACCCGTTCAAGGAGCATATTGGCGACCTATCGATGCTCTACGAAGAGAAGATGATGCTTGCACAAAAAAACAAAGACTAA

mRNA sequence

ATGTCACTAAAAATTGCACAAACAACATCAAAACACGTAGATTTTAAAAGCCAAACCGTTCCAGATTCTGTAGTTCATTTCTTCAAAAGTCTTGGGTTTACAAATTCCGACATTTGTCTCATTATCAAGAGACGCCCAACTCTTCTTTGCTCCAATCCATCAAAAACATTGGTCCCTAAAATTTCTTTTCTACATGAAGTTGGCTTTTCTAAACAACAGATGAAAAAACTACTTTGCATGTTTCCCTCTGTTTTACATCAAAGTTTATATCAAAACATCATTCCTTCATTTGATTTTGTTGAAAAATTTCTTAATTCTAACAAGGAAGCTGCTGTTCAGGTCCTAACACAATGTGGGACTATTTTTAATCTTAATCTTCAAACCACATTACAAGCCAACATCGAATATCTTGAAAAATCTAAAGTTCCATCCAAACATATCCAAACCTTTTTTTTTTTTCGCTATCCTCATACACTTATGATTAATTCCCAAAGATTTAAAGCTACAGTAGATATTGTTAAGAATATGGGGATGGATCCGAATATGATGAAGTTTGTGAATACTGTTCGATGTGTGATGAGGGTGAGGAAAGATCTTTGGAAAAAGAAGAATGAAGCATACAAAAAATGGGGGTTGACGGAGGATGAAGTGTACGGGGCATTCAAAAAAAATATCACGATAATGCTATCATCGGTCGACAAAATTAATTCCATGATGGATTTCTTTGTCAATAAGGCAGGATGTCAAGCTTCCATTCTCCTAGACTTCCCTGATTTGATAAACTTCAGTGTGGAGGGAAGACTAGTTCCGAGAAATGTCGTTTTTCAAGCTTTGAAGTCTAAGGGCCTCATTACAAAAAATGTAATTAGAATTGGACACATTTTTACATCAGCTGAAAAGAAATTCAAAGGTAGATTTATCGACCCGTTCAAGGAGCATATTGGCGACCTATCGATGCTCTACGAAGAGAAGATGATGCTTGCACAAAAAAACAAAGACTAA

Coding sequence (CDS)

ATGTCACTAAAAATTGCACAAACAACATCAAAACACGTAGATTTTAAAAGCCAAACCGTTCCAGATTCTGTAGTTCATTTCTTCAAAAGTCTTGGGTTTACAAATTCCGACATTTGTCTCATTATCAAGAGACGCCCAACTCTTCTTTGCTCCAATCCATCAAAAACATTGGTCCCTAAAATTTCTTTTCTACATGAAGTTGGCTTTTCTAAACAACAGATGAAAAAACTACTTTGCATGTTTCCCTCTGTTTTACATCAAAGTTTATATCAAAACATCATTCCTTCATTTGATTTTGTTGAAAAATTTCTTAATTCTAACAAGGAAGCTGCTGTTCAGGTCCTAACACAATGTGGGACTATTTTTAATCTTAATCTTCAAACCACATTACAAGCCAACATCGAATATCTTGAAAAATCTAAAGTTCCATCCAAACATATCCAAACCTTTTTTTTTTTTCGCTATCCTCATACACTTATGATTAATTCCCAAAGATTTAAAGCTACAGTAGATATTGTTAAGAATATGGGGATGGATCCGAATATGATGAAGTTTGTGAATACTGTTCGATGTGTGATGAGGGTGAGGAAAGATCTTTGGAAAAAGAAGAATGAAGCATACAAAAAATGGGGGTTGACGGAGGATGAAGTGTACGGGGCATTCAAAAAAAATATCACGATAATGCTATCATCGGTCGACAAAATTAATTCCATGATGGATTTCTTTGTCAATAAGGCAGGATGTCAAGCTTCCATTCTCCTAGACTTCCCTGATTTGATAAACTTCAGTGTGGAGGGAAGACTAGTTCCGAGAAATGTCGTTTTTCAAGCTTTGAAGTCTAAGGGCCTCATTACAAAAAATGTAATTAGAATTGGACACATTTTTACATCAGCTGAAAAGAAATTCAAAGGTAGATTTATCGACCCGTTCAAGGAGCATATTGGCGACCTATCGATGCTCTACGAAGAGAAGATGATGCTTGCACAAAAAAACAAAGACTAA

Protein sequence

MSLKIAQTTSKHVDFKSQTVPDSVVHFFKSLGFTNSDICLIIKRRPTLLCSNPSKTLVPKISFLHEVGFSKQQMKKLLCMFPSVLHQSLYQNIIPSFDFVEKFLNSNKEAAVQVLTQCGTIFNLNLQTTLQANIEYLEKSKVPSKHIQTFFFFRYPHTLMINSQRFKATVDIVKNMGMDPNMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLSSVDKINSMMDFFVNKAGCQASILLDFPDLINFSVEGRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKKFKGRFIDPFKEHIGDLSMLYEEKMMLAQKNKD

Homology

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BLAST of HG10012001 vs. NCBI nr
Match: XP_023539068.1 (transcription termination factor MTERF5, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243.4 bits (620), Expect = 2.7e-60
Identity = 132/329 (40.12%), Postives = 203/329 (61.70%), Query Frame = 0


Query: 2   SLKIAQTTSKHVDFKSQTVPDSVVHFFKSLGFTNSDICLIIKRRPTLLCSNPSKTLVPKI 61
           S K A   S  VDF+S   P  V+  FK+ GF+ S I  +IK+ P ++ +NP KTL+PK+
Sbjct: 40  SPKSASLASNFVDFESNEKP--VILLFKNHGFSKSQISELIKKFPQVISTNPEKTLLPKL 99

Query: 62  SFLHEVGFSKQQMKKLLCMFPSVLHQSLYQNIIPSFDFVEKFLNSNKEAAVQVLTQCGTI 121
            FL   G S  ++ KL+C FP++L +SL + IIPSF+++   L + +E  +  + +CG +
Sbjct: 100 LFLQSKGLSSPEVAKLVCGFPAILKRSLNRQIIPSFNYIHDLLQT-EEKTIAAIKRCGGL 159

Query: 122 FNLNLQTTLQANIEYLEKSKVPSKHIQTFFFFRYPHTLMINSQRFKATVDIVKNMGMDPN 181
              +L  + + N+E L +  VP  +I +    + P   +I+S RFK  V+ VK MG +P 
Sbjct: 160 LTWDLHNSARPNVEILRQIGVPDSNIASILRSQ-PRVFLISSIRFKEIVEEVKEMGFNPL 219

Query: 182 MMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLSSVDKINSMMDF 241
            +KFV  V  +  + K  WKKK E Y+KWG  E+E+  AF+++   M++S DKIN ++DF
Sbjct: 220 RLKFVVAVFALRAMSKSTWKKKVEVYRKWGWPEEEILFAFRRHPCCMMASEDKINGVVDF 279

Query: 242 FVNKAGCQASILLDFPDLINFSVEGRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKK 301
           FVN+ GC++S +   P LI+ S++ RLVPR  V+Q L S GLI K+V  +  +F S EK+
Sbjct: 280 FVNQIGCESSYIARIPSLISHSLKKRLVPRGSVYQVLLSNGLIKKHV-NLPLLFVSTEKR 339

Query: 302 FKGRFIDPFKEHIGDLSMLYEEKMMLAQK 331
           F  +FI+P K+ I +L  LY EK+ ++ K
Sbjct: 340 FLDKFIEPHKKRIPELFKLYTEKLEVSSK 363

[Close]

BLAST of HG10012001 vs. NCBI nr
Match: XP_023521670.1 (transcription termination factor MTERF5, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 242.3 bits (617), Expect = 6.0e-60
Identity = 132/329 (40.12%), Postives = 203/329 (61.70%), Query Frame = 0


Query: 2   SLKIAQTTSKHVDFKSQTVPDSVVHFFKSLGFTNSDICLIIKRRPTLLCSNPSKTLVPKI 61
           S K A   S  VDF+S   P  V+  FK+ GF+ S I  +IK+ P +L ++P KTL+PK+
Sbjct: 40  SPKSASLASNFVDFESNEKP--VILLFKNHGFSKSQISELIKKFPQVLSTDPEKTLLPKL 99

Query: 62  SFLHEVGFSKQQMKKLLCMFPSVLHQSLYQNIIPSFDFVEKFLNSNKEAAVQVLTQCGTI 121
            FL   G S  ++ KL+C FP++L +SL + IIPSF+++   L + +E  +  + +CG +
Sbjct: 100 LFLQSKGLSSPEVAKLVCGFPAILKRSLNRQIIPSFNYIHDLLQT-EEKTIAAIKRCGGL 159

Query: 122 FNLNLQTTLQANIEYLEKSKVPSKHIQTFFFFRYPHTLMINSQRFKATVDIVKNMGMDPN 181
              +L  + + N+E L +  VP  +I +    + P   +I+S RFK  V+ VK MG +P 
Sbjct: 160 LTWDLHNSARPNVEILRQIGVPDSNIASILRSQ-PRVFLISSIRFKEIVEEVKEMGFNPL 219

Query: 182 MMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLSSVDKINSMMDF 241
            +KFV  V  +  + K  WKKK E Y+KWG  E+E+  AF+++   M++S DKIN ++DF
Sbjct: 220 RLKFVVAVFALRAMSKSTWKKKVEVYRKWGWPEEEILFAFRRHPCCMMASEDKINGVVDF 279

Query: 242 FVNKAGCQASILLDFPDLINFSVEGRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKK 301
           FVN+ GC++S +   P LI+ S++ RLVPR  V+Q L S GLI K+V  +  +F S EK+
Sbjct: 280 FVNQIGCESSYIARIPSLISHSLKKRLVPRGSVYQVLLSNGLIKKHV-NLPLLFVSTEKR 339

Query: 302 FKGRFIDPFKEHIGDLSMLYEEKMMLAQK 331
           F  +FI+P K+ I +L  LY EK+ ++ K
Sbjct: 340 FLDKFIEPHKKRIPELFKLYTEKLEVSSK 363

[Close]

BLAST of HG10012001 vs. NCBI nr
Match: XP_022956115.1 (transcription termination factor MTERF4, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 241.1 bits (614), Expect = 1.3e-59
Identity = 134/340 (39.41%), Postives = 205/340 (60.29%), Query Frame = 0


Query: 2   SLKIAQTTSKHVDFKSQTVPDS-----------VVHFFKSLGFTNSDICLIIKRRPTLLC 61
           SL+ + T+S+         PDS           V+ FF++ GF+ + I  ++K+ P +L 
Sbjct: 28  SLRYSSTSSEIASPPKSASPDSDSVKPENDEKPVIVFFENHGFSKTQISDLVKKFPQVLS 87

Query: 62  SNPSKTLVPKISFLHEVGFSKQQMKKLLCMFPSVLHQSLYQNIIPSFDFVEKFLNSNKEA 121
           +NP KTL+PK+ F    G S  ++ KL+C FPS+L +SL + IIP+FD++++ L + ++ 
Sbjct: 88  ANPEKTLLPKLLFFQSKGLSSPEIAKLVCSFPSILARSLDRKIIPAFDYIQELLQTEEKT 147

Query: 122 AVQVLTQCGTIFNLNLQTTLQANIEYLEKSKVPSKHIQTFFFFRYPHTLMINSQRFKATV 181
              +    G I   +LQ   + N+E L +  VP  +I T   ++ P   +IN+ RFK  V
Sbjct: 148 VASIKRFLG-ILTCDLQIHARPNVETLIQIGVPDSNIATILHYQ-PRVFLINTVRFKEIV 207

Query: 182 DIVKNMGMDPNMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLS 241
           + VK MG +P  +KFV  V  +  + K  W+KK E YKKWG  E+E+  AF+++   M++
Sbjct: 208 EEVKEMGFNPLRLKFVLAVFAMRAMSKSTWRKKVEVYKKWGWPEEEILSAFRRHPWCMMA 267

Query: 242 SVDKINSMMDFFVNKAGCQASILLDFPDLINFSVEGRLVPRNVVFQALKSKGLITKNVIR 301
           S DKIN +MDFFVNK GC+ S +   P LI+ S++ R+VPR  V+QAL SKGLI K+V  
Sbjct: 268 SEDKINGVMDFFVNKIGCEPSYIAKRPALISLSLKKRIVPRGSVYQALLSKGLIKKDV-N 327

Query: 302 IGHIFTSAEKKFKGRFIDPFKEHIGDLSMLYEEKMMLAQK 331
           +  +F S E +F  +FIDP KE I +L  LY+EK+  A++
Sbjct: 328 LPLLFDSTESRFLAKFIDPHKELIPELLKLYKEKLEDAKR 364

[Close]

BLAST of HG10012001 vs. NCBI nr
Match: KAG6582228.1 (Transcription termination factor MTERF15, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 239.6 bits (610), Expect = 3.9e-59
Identity = 134/340 (39.41%), Postives = 205/340 (60.29%), Query Frame = 0


Query: 2   SLKIAQTTSKHVDFKSQTVPDS-----------VVHFFKSLGFTNSDICLIIKRRPTLLC 61
           SL+ + T+S+         PDS           V+ FFK+ GF+ + I  ++K+ P +L 
Sbjct: 147 SLRYSSTSSEIASPPKSESPDSNSVKPENDEKPVIVFFKNHGFSKTQISDLVKKFPQVLS 206

Query: 62  SNPSKTLVPKISFLHEVGFSKQQMKKLLCMFPSVLHQSLYQNIIPSFDFVEKFLNSNKEA 121
           +NP KTL+PK+ F    G S  ++ KL+C FPS+L +SL + IIP+FD++++ L + ++ 
Sbjct: 207 ANPEKTLLPKLLFFQSKGLSSPEIAKLVCSFPSILARSLDRKIIPAFDYIQELLQTEEKT 266

Query: 122 AVQVLTQCGTIFNLNLQTTLQANIEYLEKSKVPSKHIQTFFFFRYPHTLMINSQRFKATV 181
              +    G I   +LQ   + N+E L +  VP  +I T   ++ P   +IN+ RFK  V
Sbjct: 267 VASMKRFLG-ILTCDLQIHARPNVETLIQIGVPDSNIATILHYQ-PRVFLINTVRFKEIV 326

Query: 182 DIVKNMGMDPNMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLS 241
           + VK MG +P  +KFV  V  +  + K  W+KK E YKKWG  E+E+  AF+++   M++
Sbjct: 327 EEVKEMGFNPLRLKFVLAVFAMRAMSKSTWRKKVEVYKKWGWPEEEILSAFRRHPWCMMA 386

Query: 242 SVDKINSMMDFFVNKAGCQASILLDFPDLINFSVEGRLVPRNVVFQALKSKGLITKNVIR 301
           S +KIN +MDFFVNK GC+ S +   P LI+ S++ R+VPR  V+QAL SKGLI K+V  
Sbjct: 387 SENKINGVMDFFVNKIGCEPSYIAKRPALISLSLKKRIVPRGSVYQALLSKGLIKKDV-N 446

Query: 302 IGHIFTSAEKKFKGRFIDPFKEHIGDLSMLYEEKMMLAQK 331
           +  +F S E +F  +FIDP KE I +L  LY+EK+  A++
Sbjct: 447 LPLLFDSTESRFLAKFIDPHKELIPELLKLYKEKLEDAKR 483

[Close]

BLAST of HG10012001 vs. NCBI nr
Match: XP_023526917.1 (transcription termination factor MTERF6, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.4 bits (607), Expect = 8.7e-59
Identity = 132/329 (40.12%), Postives = 203/329 (61.70%), Query Frame = 0


Query: 2   SLKIAQTTSKHVDFKSQTVPDSVVHFFKSLGFTNSDICLIIKRRPTLLCSNPSKTLVPKI 61
           SLK A   S  V  ++   P  V+ FF++ GF+ + I  ++K+ P +L +NP KTL+PK+
Sbjct: 41  SLKSASPDSNSVKPENDEKP--VIVFFENHGFSKTQISDLVKKFPQVLSANPEKTLLPKL 100

Query: 62  SFLHEVGFSKQQMKKLLCMFPSVLHQSLYQNIIPSFDFVEKFLNSNKEAAVQVLTQCGTI 121
            F    G S  ++ KL+C +PS+L +SL + IIP+FD++++ L + ++    +    G I
Sbjct: 101 LFFQSKGLSSPEIAKLVCSYPSILARSLDRKIIPAFDYIQELLQTEEKTVASIKRFLG-I 160

Query: 122 FNLNLQTTLQANIEYLEKSKVPSKHIQTFFFFRYPHTLMINSQRFKATVDIVKNMGMDPN 181
              +LQ   + N+E L +  VP  +I T   ++ P   +IN+ RFK  V+ VK MG +P 
Sbjct: 161 LTCDLQIYARPNVETLIQIGVPDSNIATILHYQ-PRVFLINTVRFKEIVEEVKEMGFNPL 220

Query: 182 MMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLSSVDKINSMMDF 241
            +KFV  V  +  + K  W+KK E YKKWG  E+E+  AF+++   M++S +KIN +MDF
Sbjct: 221 RLKFVLAVFAMRAMSKCTWRKKVEVYKKWGWPEEEILSAFRRHPWCMMASENKINGVMDF 280

Query: 242 FVNKAGCQASILLDFPDLINFSVEGRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKK 301
           FVNK GC+ S +   P LI+ S++ R+VPR  V+Q L SKGLI K+V  +  +F S E +
Sbjct: 281 FVNKIGCEPSYIAKRPALISLSLKKRIVPRGSVYQVLLSKGLIKKDV-NLPLLFDSTESR 340

Query: 302 FKGRFIDPFKEHIGDLSMLYEEKMMLAQK 331
           F  +FIDP KE I +L MLY+EK+  A++
Sbjct: 341 FLAKFIDPHKELIPELLMLYKEKLEDAKR 364

[Close]

BLAST of HG10012001 vs. ExPASy Swiss-Prot
Match: F4IHL3 (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF2 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.6e-07
Identity = 32/113 (28.32%), Postives = 56/113 (49.56%), Query Frame = 0


Query: 24  VVHFFKSLGFTNSDICLIIKRRPTLLCSNPSKTLVPKISFLHEVGFSKQQMKKLLCMFPS 83
           +V +F  LG     +  I+  +P L C +  KT+ PK+ FL E+G   + +  +L  FPS
Sbjct: 391 LVKYFYYLGIPKEGMKRILVVKPILYCIDLEKTIAPKVRFLQEMGIPNEAIGNMLVKFPS 450

Query: 84  VLHQSLYQNIIPSFDFVEKFLNSNKEAAVQVLTQCGTIFNLNLQTTLQANIEY 137
           +L  SLY+ I P   F+       ++   +V+     +   ++ T L+ N+ Y
Sbjct: 451 LLTNSLYKKIRPVVIFLLTRAGVTQKDIGKVIAMDPALLGCSIGTKLEPNMRY 503

[Close]

BLAST of HG10012001 vs. ExPASy Swiss-Prot
Match: F4JVI3 (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF5 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.6e-07
Identity = 34/119 (28.57%), Postives = 61/119 (51.26%), Query Frame = 0


Query: 24  VVHFFKSLGFTNSDICLIIKRRPTLLCSNPSKTLVPKISFLHEVGFSKQQMKKLLCMFPS 83
           VV F   LG   SDI  I+ +RP +   + +  L P ++FL  +G  K Q  K++  FP+
Sbjct: 235 VVEFLLDLGIPKSDIPTILCKRPQICGISLTDNLKPTMAFLETLGIDKNQWAKIISRFPA 294

Query: 84  VLHQSLYQNIIPSFDFVEKFLNSNKEAAVQVLTQCGTIFNLNLQTTLQANIEYLEKSKV 143
           +L  S  Q +  + +F+ +     +E   ++LT+C  I + +++  L+  +EY     V
Sbjct: 295 ILTYS-RQKLTSTVEFLSQ-TGLTEEQIGRILTRCPNIMSYSVEDKLRPTMEYFRSLNV 351

[Close]

BLAST of HG10012001 vs. ExPASy Swiss-Prot
Match: Q84X53 (Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF1 PE=2 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 8.1e-07
Identity = 31/85 (36.47%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 27  FFKSLGFTNSDICLIIKRRPTLLCSNPSKTLVPKISFLHE-VGFSKQQMKKLLCMFPSVL 86
           F K+LGF   D   I  R   LL SN  +TL+PKI +L E +GF+++++ K++   P++L
Sbjct: 144 FLKTLGFVGRD--TITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALL 203

Query: 87  HQSLYQNIIPSFD-FVEKFLNSNKE 110
             S+  N++P  + F+E+     KE
Sbjct: 204 TYSVDNNLVPKVEFFIEEMRGDVKE 226

[Close]

BLAST of HG10012001 vs. ExPASy TrEMBL
Match: A0A6J1GWY1 (transcription termination factor MTERF4, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457902 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 6.5e-60
Identity = 134/340 (39.41%), Postives = 205/340 (60.29%), Query Frame = 0


Query: 2   SLKIAQTTSKHVDFKSQTVPDS-----------VVHFFKSLGFTNSDICLIIKRRPTLLC 61
           SL+ + T+S+         PDS           V+ FF++ GF+ + I  ++K+ P +L 
Sbjct: 28  SLRYSSTSSEIASPPKSASPDSDSVKPENDEKPVIVFFENHGFSKTQISDLVKKFPQVLS 87

Query: 62  SNPSKTLVPKISFLHEVGFSKQQMKKLLCMFPSVLHQSLYQNIIPSFDFVEKFLNSNKEA 121
           +NP KTL+PK+ F    G S  ++ KL+C FPS+L +SL + IIP+FD++++ L + ++ 
Sbjct: 88  ANPEKTLLPKLLFFQSKGLSSPEIAKLVCSFPSILARSLDRKIIPAFDYIQELLQTEEKT 147

Query: 122 AVQVLTQCGTIFNLNLQTTLQANIEYLEKSKVPSKHIQTFFFFRYPHTLMINSQRFKATV 181
              +    G I   +LQ   + N+E L +  VP  +I T   ++ P   +IN+ RFK  V
Sbjct: 148 VASIKRFLG-ILTCDLQIHARPNVETLIQIGVPDSNIATILHYQ-PRVFLINTVRFKEIV 207

Query: 182 DIVKNMGMDPNMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLS 241
           + VK MG +P  +KFV  V  +  + K  W+KK E YKKWG  E+E+  AF+++   M++
Sbjct: 208 EEVKEMGFNPLRLKFVLAVFAMRAMSKSTWRKKVEVYKKWGWPEEEILSAFRRHPWCMMA 267

Query: 242 SVDKINSMMDFFVNKAGCQASILLDFPDLINFSVEGRLVPRNVVFQALKSKGLITKNVIR 301
           S DKIN +MDFFVNK GC+ S +   P LI+ S++ R+VPR  V+QAL SKGLI K+V  
Sbjct: 268 SEDKINGVMDFFVNKIGCEPSYIAKRPALISLSLKKRIVPRGSVYQALLSKGLIKKDV-N 327

Query: 302 IGHIFTSAEKKFKGRFIDPFKEHIGDLSMLYEEKMMLAQK 331
           +  +F S E +F  +FIDP KE I +L  LY+EK+  A++
Sbjct: 328 LPLLFDSTESRFLAKFIDPHKELIPELLKLYKEKLEDAKR 364

[Close]

BLAST of HG10012001 vs. ExPASy TrEMBL
Match: A0A6J1I9L4 (transcription termination factor MTERF5, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111472348 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 9.4e-59
Identity = 130/329 (39.51%), Postives = 200/329 (60.79%), Query Frame = 0


Query: 2   SLKIAQTTSKHVDFKSQTVPDSVVHFFKSLGFTNSDICLIIKRRPTLLCSNPSKTLVPKI 61
           S K A   S  VDF+S   P  V+ FF++ GF+ S I  ++K+ P +L +NP KTL+PK+
Sbjct: 40  SPKSASLASNFVDFESNEKP--VILFFENHGFSKSQISELVKKFPQVLSTNPEKTLLPKL 99

Query: 62  SFLHEVGFSKQQMKKLLCMFPSVLHQSLYQNIIPSFDFVEKFLNSNKEAAVQVLTQCGTI 121
            FL   G S  ++ KL+C FP +L +SL + IIPSF+++   L + +E  +  + + G +
Sbjct: 100 LFLQSKGLSSPEVAKLVCGFPGILKRSLNRQIIPSFNYIHDLLQT-EEKTIAAIKRFGGL 159

Query: 122 FNLNLQTTLQANIEYLEKSKVPSKHIQTFFFFRYPHTLMINSQRFKATVDIVKNMGMDPN 181
              +LQ + + N+E L +  VP  +I +    + P   +I+  RF+  V+ VK MG +P 
Sbjct: 160 LTWDLQNSARPNVEILRQIGVPDSNIASILRSQ-PRVFLISPIRFRKIVEEVKEMGFNPL 219

Query: 182 MMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLSSVDKINSMMDF 241
            +KFV  V  +  + K  WKKK E Y+KWG  E+E+  AF ++   M++S DKIN +MDF
Sbjct: 220 RLKFVLAVFALRAMSKSTWKKKVEVYRKWGWPEEEILFAFGRHPWCMMASADKINGVMDF 279

Query: 242 FVNKAGCQASILLDFPDLINFSVEGRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKK 301
           FVN+ GC++S +   P LI+ S++ R+VPR  V+Q L S GLI K+V  +  +F S EK+
Sbjct: 280 FVNQIGCESSYIARIPSLISHSLKKRIVPRGSVYQVLLSNGLIKKHV-NLPLLFVSTEKR 339

Query: 302 FKGRFIDPFKEHIGDLSMLYEEKMMLAQK 331
           F  +FI+P K+ I  L  LY EK+ ++ K
Sbjct: 340 FLDKFIEPHKKRIPGLLKLYTEKLEVSSK 363

[Close]

BLAST of HG10012001 vs. ExPASy TrEMBL
Match: A0A6J1EZH0 (uncharacterized protein LOC111440613 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111440613 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 3.6e-58
Identity = 131/335 (39.10%), Postives = 198/335 (59.10%), Query Frame = 0


Query: 2   SLKIAQTTSKHVDFKSQTVPDS-----------VVHFFKSLGFTNSDICLIIKRRPTLLC 61
           SL+   T+S+         PDS           V+ FF++ GF+ + I  ++K+ P +L 
Sbjct: 122 SLRYLSTSSEIASSPKSASPDSNKVKPENDEKPVIVFFENHGFSKTQISELVKKFPQVLS 181

Query: 62  SNPSKTLVPKISFLHEVGFSKQQMKKLLCMFPSVLHQSLYQNIIPSFDFVEKFLNSNKEA 121
           +NP KTL+PK+ F    G S  ++ KL+C FPS+L +SL + IIP+FD++++ L + ++ 
Sbjct: 182 ANPEKTLLPKLLFFQSKGLSSPEIAKLVCGFPSILMRSLDRKIIPAFDYIQELLQTEEKT 241

Query: 122 AVQVLTQCGTIFNLNLQTTLQANIEYLEKSKVPSKHIQTFFFFRYPHTLMINSQRFKATV 181
              +    G I   +LQ   + N+E L +  VP   I T   ++ P   ++N+ RFK  V
Sbjct: 242 IASIKRFLG-ILTWDLQIYARPNVETLIQIGVPDSKIATILEYQ-PRVFLVNTVRFKEIV 301

Query: 182 DIVKNMGMDPNMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLS 241
           + VK MG +P  + FV  V  +  + K  W+KK E YKKWG  E+E+  AF+++   M++
Sbjct: 302 EEVKEMGFNPLRLNFVLAVFAMRAMSKSTWRKKVEVYKKWGWPEEEILSAFRRHPWCMMA 361

Query: 242 SVDKINSMMDFFVNKAGCQASILLDFPDLINFSVEGRLVPRNVVFQALKSKGLITKNVIR 301
           S DKIN +MDFFVNK GC+ S +   P LI+ S++ R+VPR  V+Q L SKGLI K+V  
Sbjct: 362 SEDKINGVMDFFVNKIGCEPSYIAKRPALISLSLKKRIVPRGSVYQVLLSKGLIKKDV-N 421

Query: 302 IGHIFTSAEKKFKGRFIDPFKEHIGDLSMLYEEKM 326
           +  +F SAE +F  +FIDP KE I  L  LY+EK+
Sbjct: 422 LPFLFESAENRFLDKFIDPHKELIPGLLKLYKEKL 453

[Close]

BLAST of HG10012001 vs. ExPASy TrEMBL
Match: A0A6J1F4G8 (uncharacterized protein LOC111440613 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111440613 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 3.6e-58
Identity = 131/335 (39.10%), Postives = 198/335 (59.10%), Query Frame = 0


Query: 2   SLKIAQTTSKHVDFKSQTVPDS-----------VVHFFKSLGFTNSDICLIIKRRPTLLC 61
           SL+   T+S+         PDS           V+ FF++ GF+ + I  ++K+ P +L 
Sbjct: 123 SLRYLSTSSEIASSPKSASPDSNKVKPENDEKPVIVFFENHGFSKTQISELVKKFPQVLS 182

Query: 62  SNPSKTLVPKISFLHEVGFSKQQMKKLLCMFPSVLHQSLYQNIIPSFDFVEKFLNSNKEA 121
           +NP KTL+PK+ F    G S  ++ KL+C FPS+L +SL + IIP+FD++++ L + ++ 
Sbjct: 183 ANPEKTLLPKLLFFQSKGLSSPEIAKLVCGFPSILMRSLDRKIIPAFDYIQELLQTEEKT 242

Query: 122 AVQVLTQCGTIFNLNLQTTLQANIEYLEKSKVPSKHIQTFFFFRYPHTLMINSQRFKATV 181
              +    G I   +LQ   + N+E L +  VP   I T   ++ P   ++N+ RFK  V
Sbjct: 243 IASIKRFLG-ILTWDLQIYARPNVETLIQIGVPDSKIATILEYQ-PRVFLVNTVRFKEIV 302

Query: 182 DIVKNMGMDPNMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLS 241
           + VK MG +P  + FV  V  +  + K  W+KK E YKKWG  E+E+  AF+++   M++
Sbjct: 303 EEVKEMGFNPLRLNFVLAVFAMRAMSKSTWRKKVEVYKKWGWPEEEILSAFRRHPWCMMA 362

Query: 242 SVDKINSMMDFFVNKAGCQASILLDFPDLINFSVEGRLVPRNVVFQALKSKGLITKNVIR 301
           S DKIN +MDFFVNK GC+ S +   P LI+ S++ R+VPR  V+Q L SKGLI K+V  
Sbjct: 363 SEDKINGVMDFFVNKIGCEPSYIAKRPALISLSLKKRIVPRGSVYQVLLSKGLIKKDV-N 422

Query: 302 IGHIFTSAEKKFKGRFIDPFKEHIGDLSMLYEEKM 326
           +  +F SAE +F  +FIDP KE I  L  LY+EK+
Sbjct: 423 LPFLFESAENRFLDKFIDPHKELIPGLLKLYKEKL 454

[Close]

BLAST of HG10012001 vs. ExPASy TrEMBL
Match: A0A6J1GVP2 (uncharacterized protein LOC111457902 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457902 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.0e-57
Identity = 130/335 (38.81%), Postives = 198/335 (59.10%), Query Frame = 0


Query: 2   SLKIAQTTSKHVDFKSQTVPDS-----------VVHFFKSLGFTNSDICLIIKRRPTLLC 61
           SL+ + T+S+         PDS           V+  F++ GF+ + I  ++K+ P +L 
Sbjct: 28  SLRYSSTSSEIASSPKSASPDSNSVEPENDEKPVIVLFENHGFSKTQISELVKKFPQVLS 87

Query: 62  SNPSKTLVPKISFLHEVGFSKQQMKKLLCMFPSVLHQSLYQNIIPSFDFVEKFLNSNKEA 121
           +NP KTL+PK+ F    G S  ++ KL+C FPS+L +SL + IIP+FD++++ L + ++ 
Sbjct: 88  ANPEKTLLPKLLFFQSKGLSSPEIAKLVCGFPSILMRSLDRKIIPAFDYIQELLQTEEKT 147

Query: 122 AVQVLTQCGTIFNLNLQTTLQANIEYLEKSKVPSKHIQTFFFFRYPHTLMINSQRFKATV 181
              +    G I   +LQ   + N+E L +  VP   I T   ++ P   ++N+ RFK  V
Sbjct: 148 IASIKRFLG-ILTWDLQIYARPNVETLIQIGVPDSKIATILEYQ-PRVFLVNTVRFKEIV 207

Query: 182 DIVKNMGMDPNMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLS 241
           + VK MG +P  + FV  V  +  + K  W+KK E YKKWG  E+E+  AF+++   M++
Sbjct: 208 EEVKEMGFNPLRLNFVLAVFAMRAMSKSTWRKKVEVYKKWGWPEEEILSAFRRHPWCMMA 267

Query: 242 SVDKINSMMDFFVNKAGCQASILLDFPDLINFSVEGRLVPRNVVFQALKSKGLITKNVIR 301
           S DKIN +MDFFVNK GC+ S +   P LI+ S++ R+VPR  V+Q L SKGLI K+V  
Sbjct: 268 SEDKINGVMDFFVNKIGCEPSYIAKRPALISLSLKKRIVPRGSVYQVLLSKGLIKKDV-N 327

Query: 302 IGHIFTSAEKKFKGRFIDPFKEHIGDLSMLYEEKM 326
           +  +F SAE +F  +FIDP KE I  L  LY+EK+
Sbjct: 328 LPFLFESAENRFLDKFIDPHKELIPGLLKLYKEKL 359

[Close]

BLAST of HG10012001 vs. TAIR 10
Match: AT5G07900.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 161.8 bits (408), Expect = 9.7e-40
Identity = 97/317 (30.60%), Postives = 167/317 (52.68%), Query Frame = 0


Query: 6   AQTTSKHVDFKSQTVPDSVVHFFKSLGFTNSDICLIIKRRPTLLCSNPSKTLVPKISFLH 65
           A   S+ +   S   P++V++  +  GFT + I  ++K+RP LL +N    L+PK+SF  
Sbjct: 86  ATVASRKLLLDSPERPNTVLNLLRDHGFTTAQISSLVKKRPVLLLANAESVLLPKLSFFL 145

Query: 66  EVGFSKQQMKKLLCMFPSVLHQSLYQNIIPSFDFVEKFLNSNKEAAVQVLTQCGTIFNLN 125
            +G SK  + + L   P++L +SL   +IPS++F++  L+S+ E  V  L +   +F  +
Sbjct: 146 SIGVSKSLLARTLASDPTILTRSLVNQLIPSYNFLKSVLDSD-EKIVAALRRTTWVFLED 205

Query: 126 LQTTLQANIEYLEKSKVPSKHIQTFFFFRYPHTLMINSQRFKATVDIVKNMGMDPNMMKF 185
               L  NI Y+ ++ VP K I+      +P  +M  +  F+A     + MG +P    F
Sbjct: 206 HTKNLVPNINYMAETGVPEKCIK-LLLTHFPEAVMQKNHEFQAIAKQAQEMGFNPQKSTF 265

Query: 186 VNTVRCVM-RVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLSSVDKINSMMDFFVN 245
           V  +  +  +  K +W K  E Y++WG +ED++  AFKK+   M+ S  KIN  M++FVN
Sbjct: 266 VLAIHALSGKGNKSIWDKCFEVYQRWGWSEDDIMCAFKKHPHCMMLSERKINRTMEYFVN 325

Query: 246 KAGCQASILLDFPDLINFSVEGRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKKFKG 305
           +       +   P ++ FS+E R++PR  V + L S GL+ K    +  +    EK F  
Sbjct: 326 EMNMAPRSIAQCPVVLFFSLEKRIIPRCSVTKVLVSNGLV-KEDWSLTSLLVPVEKVFLE 385

Query: 306 RFIDPFKEHIGDLSMLY 322
           + +  ++E + +L  LY
Sbjct: 386 KLVIKYEEELPELMNLY 399

[Close]

BLAST of HG10012001 vs. TAIR 10
Match: AT1G21150.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 135.2 bits (339), Expect = 9.7e-32
Identity = 86/317 (27.13%), Postives = 156/317 (49.21%), Query Frame = 0


Query: 1   MSLKIAQTTSKHVDFKSQTVPDSVVHFFKSLGFTNSDICLIIKRRPTLLCSNPSKTLVPK 60
           +SL+ A++ S+ V   S   PDSV+  FK  GFTN  I  +IK  P +L  +P   + PK
Sbjct: 68  LSLESAKSNSRFVKLVSSKKPDSVLALFKDHGFTNDQITSVIKSFPRVLSLSPEDVISPK 127

Query: 61  ISFLHEVGFSKQQMKKLLCMFPSVLHQSLYQNIIPSFDFVEKFLNSNKEAAVQVLTQCGT 120
           + F   +GFS     K++   P +L  SL++ +IP +D ++  L   +E+ V+ L +   
Sbjct: 128 LMFFSSIGFSTSDTAKMISSSPKMLSYSLHKRLIPCYDSLKSIL-VEEESVVKCLKRGIR 187

Query: 121 IFNLNLQTTLQANIEYLEKSKVPSKHIQTFFFFRYPHTLMINSQRFKATVDIVKNMGMDP 180
            F+L +   +   +    +  VP K I+ +     P T     +RF   ++ V + G DP
Sbjct: 188 CFSLKITHCVSLRVSICRELGVPDKSIK-WLVQASPFTFFSRERRFNEVLNRVCSYGFDP 247

Query: 181 NMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLSSVDKINSMMD 240
               FV+ +       +   ++K + ++ +G ++++   A  +    +  S +KI   ++
Sbjct: 248 KKAGFVHAMVAFDCTSESAMERKFKLFQCFGWSKEDFVAAIMRFPNCVTVSDEKIMYTLE 307

Query: 241 FFVNKAGCQASILLDFPDLINFSVEGRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEK 300
           + VN  G QA  ++  P +++ S+E R+ PRN V   L SKGL+ K  I    I      
Sbjct: 308 YLVNNIGLQARDIVARPVVLSLSMEKRIKPRNQVISLLLSKGLVKKEDINYFTILKLKSS 367

Query: 301 KFKGRFIDPFKEHIGDL 318
           +F  +F+  +++ +  L
Sbjct: 368 EFMDKFVLKYQDEMPQL 382

[Close]

BLAST of HG10012001 vs. TAIR 10
Match: AT1G61980.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 117.1 bits (292), Expect = 2.7e-26
Identity = 88/342 (25.73%), Postives = 157/342 (45.91%), Query Frame = 0


Query: 4   KIAQTTSKHVDFKSQTVPDSVVHFFKSLGFTNSDICLIIKRRPTLLCSNPSKTLVPKISF 63
           K+A++ S+ V F+ +  PDSV++  +S GFT+S I  I+   P LL ++  K+L PK+ F
Sbjct: 67  KLAESVSRKVSFEDKDNPDSVLNLLRSHGFTDSQISTIVTDYPQLLVADAEKSLAPKLQF 126

Query: 64  LHEVGFSKQQMKKLLCMFPSVLHQSLYQNIIPSFDFVEKFL---NSNKEAAVQVLTQCGT 123
           L   G S  ++ +++   P +L +  ++ I   +DF+++ L   +S  E + Q   Q   
Sbjct: 127 LQSRGASSSELTEIVSTVPKILGKRGHKTISVFYDFIKETLLDKSSKSEKSCQPFPQG-- 186

Query: 124 IFNLNLQTTLQANIEYLEKSKVPSKHIQTFFFFRYPHTLMINSQRFKATVDIVKNMGMDP 183
               NL+  ++ N+  L +  +P K +  F         +   ++F+ ++  V  MG DP
Sbjct: 187 ----NLENKIR-NLSVLRELGMPHKLL--FPLLISCDVPVFGKEKFEESLKKVVEMGFDP 246

Query: 184 NMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKK----------------- 243
           +  KFV  +  V R+     + K  AYK+ G   + V+  FK+                 
Sbjct: 247 STSKFVEALCVVQRLSDKNIEDKVNAYKRLGFDVEYVWTVFKRWPNFLTHSEKKILNTIE 306

Query: 244 ----------NITIMLS--------SVDKINSMMDFFVNKAGCQASILLDFPDLINFSVE 303
                       ++++         S + +    +F V K       L+  P ++ +S+E
Sbjct: 307 TFLGLGFSRDEFSVLIKRFPQGIGLSAEMVKKKTEFLVKKMNWPLKALVSNPAVLGYSLE 366

Query: 304 GRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKKFKGRFI 308
            R VPR  V QAL SKGLI   +  I  +F   ++ F  R++
Sbjct: 367 KRTVPRGNVVQALISKGLIGSELPSISRVFVCTDQVFLNRYV 399

[Close]

BLAST of HG10012001 vs. TAIR 10
Match: AT1G61970.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-25
Identity = 83/342 (24.27%), Postives = 157/342 (45.91%), Query Frame = 0


Query: 1   MSLKIAQTTSKHVDFKSQTVPDSVVHFFKSLGFTNSDICLIIKRRPTLLCSNPSKTLVPK 60
           ++ K+A++ S+ V F+ +  PDSV++   S GFT S I  II+  P LL ++  K+L PK
Sbjct: 64  LTTKLAESISRKVSFEDKNNPDSVLNLLTSHGFTGSQISTIIRDYPQLLIADAEKSLGPK 123

Query: 61  ISFLHEVGFSKQQMKKLLCMFPSVLHQSLYQNIIPSFDFVEKFLNSNKEAAVQVLTQCGT 120
           + FL   G S  ++ +++   P +L +  ++ I   +DF++  L        ++   C +
Sbjct: 124 LQFLQSRGASSSEITEIVSSVPEILGKKGHKTISVYYDFIKDTLLEKSSKNEKL---CHS 183

Query: 121 IFNLNLQTTLQANIEYLEKSKVPSKHIQTFFFFRYPHTLMINSQRFKATVDIVKNMGMDP 180
           +   NL+  ++ N+  L +  +P K +  F         +   ++F+ T+  V  MG DP
Sbjct: 184 LPQGNLENKIR-NVSVLRELGMPHKLL--FSLLISDSQPVCGKEKFEETLKKVVEMGFDP 243

Query: 181 NMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKK-NITIMLS--------- 240
              KFV  ++ + ++ +   ++K   YK  G    +V+ +FKK  I++ +S         
Sbjct: 244 TTSKFVEALQVIYKMNEKTIEEKVHLYKSLGFDVGDVWSSFKKWPISLRVSEKKMLDSIE 303

Query: 241 -------------------------SVDKINSMMDFFVNKAGCQASILLDFPDLINFSVE 300
                                    S + +    +F V K       ++  P +  +S+E
Sbjct: 304 TFLGLGFSRDEFAKMVKHFPPCIGLSTETVKKKTEFLVKKMNWPLKAVVSNPAVFGYSLE 363

Query: 301 GRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKKFKGRFI 308
            R+VPR  V +AL SKGL+   +  I  +    ++ F  R++
Sbjct: 364 KRIVPRGNVIKALMSKGLMRNELPSISCVLMCTKQVFLNRYV 399

[Close]

BLAST of HG10012001 vs. TAIR 10
Match: AT1G61970.2 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-25
Identity = 83/342 (24.27%), Postives = 157/342 (45.91%), Query Frame = 0


Query: 1   MSLKIAQTTSKHVDFKSQTVPDSVVHFFKSLGFTNSDICLIIKRRPTLLCSNPSKTLVPK 60
           ++ K+A++ S+ V F+ +  PDSV++   S GFT S I  II+  P LL ++  K+L PK
Sbjct: 64  LTTKLAESISRKVSFEDKNNPDSVLNLLTSHGFTGSQISTIIRDYPQLLIADAEKSLGPK 123

Query: 61  ISFLHEVGFSKQQMKKLLCMFPSVLHQSLYQNIIPSFDFVEKFLNSNKEAAVQVLTQCGT 120
           + FL   G S  ++ +++   P +L +  ++ I   +DF++  L        ++   C +
Sbjct: 124 LQFLQSRGASSSEITEIVSSVPEILGKKGHKTISVYYDFIKDTLLEKSSKNEKL---CHS 183

Query: 121 IFNLNLQTTLQANIEYLEKSKVPSKHIQTFFFFRYPHTLMINSQRFKATVDIVKNMGMDP 180
           +   NL+  ++ N+  L +  +P K +  F         +   ++F+ T+  V  MG DP
Sbjct: 184 LPQGNLENKIR-NVSVLRELGMPHKLL--FSLLISDSQPVCGKEKFEETLKKVVEMGFDP 243

Query: 181 NMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKK-NITIMLS--------- 240
              KFV  ++ + ++ +   ++K   YK  G    +V+ +FKK  I++ +S         
Sbjct: 244 TTSKFVEALQVIYKMNEKTIEEKVHLYKSLGFDVGDVWSSFKKWPISLRVSEKKMLDSIE 303

Query: 241 -------------------------SVDKINSMMDFFVNKAGCQASILLDFPDLINFSVE 300
                                    S + +    +F V K       ++  P +  +S+E
Sbjct: 304 TFLGLGFSRDEFAKMVKHFPPCIGLSTETVKKKTEFLVKKMNWPLKAVVSNPAVFGYSLE 363

Query: 301 GRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKKFKGRFI 308
            R+VPR  V +AL SKGL+   +  I  +    ++ F  R++
Sbjct: 364 KRIVPRGNVIKALMSKGLMRNELPSISCVLMCTKQVFLNRYV 399

The following BLAST results are available for this feature:

BLAST of HG10012001 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023539068.1	2.7e-60	40.12	transcription termination factor MTERF5, chloroplastic-like [Cucurbita pepo subs...	[more]
XP_023521670.1	6.0e-60	40.12	transcription termination factor MTERF5, chloroplastic-like [Cucurbita pepo subs...	[more]
XP_022956115.1	1.3e-59	39.41	transcription termination factor MTERF4, chloroplastic-like isoform X1 [Cucurbit...	[more]
KAG6582228.1	3.9e-59	39.41	Transcription termination factor MTERF15, mitochondrial, partial [Cucurbita argy...	[more]
XP_023526917.1	8.7e-59	40.12	transcription termination factor MTERF6, chloroplastic/mitochondrial-like [Cucur...	[more]

BLAST of HG10012001 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IHL3	3.6e-07	28.32	Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana O...	[more]
F4JVI3	3.6e-07	28.57	Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q84X53	8.1e-07	36.47	Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX...	[more]

BLAST of HG10012001 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GWY1	6.5e-60	39.41	transcription termination factor MTERF4, chloroplastic-like isoform X1 OS=Cucurb...	[more]
A0A6J1I9L4	9.4e-59	39.51	transcription termination factor MTERF5, chloroplastic-like OS=Cucurbita maxima ...	[more]
A0A6J1EZH0	3.6e-58	39.10	uncharacterized protein LOC111440613 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1F4G8	3.6e-58	39.10	uncharacterized protein LOC111440613 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1GVP2	1.0e-57	38.81	uncharacterized protein LOC111457902 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of HG10012001 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G07900.1	9.7e-40	30.60	Mitochondrial transcription termination factor family protein	[more]
AT1G21150.1	9.7e-32	27.13	Mitochondrial transcription termination factor family protein	[more]
AT1G61980.1	2.7e-26	25.73	Mitochondrial transcription termination factor family protein	[more]
AT1G61970.1	1.4e-25	24.27	Mitochondrial transcription termination factor family protein	[more]
AT1G61970.2	1.4e-25	24.27	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 250..284 e-value: 8.1 score: 15.4 coord: 75..106 e-value: 3.6 score: 16.6 coord: 149..179 e-value: 220.0 score: 8.9 coord: 39..70 e-value: 0.0028 score: 26.9 coord: 112..143 e-value: 150.0 score: 10.3
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 26..147 e-value: 2.8E-17 score: 62.6 coord: 151..302 e-value: 2.0E-14 score: 53.2
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 2..327
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 104..313 e-value: 2.4E-33 score: 117.4
None	No IPR available	PANTHER	PTHR13068:SF160	TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED	coord: 2..327

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10012001.1	HG10012001.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003690	double-stranded DNA binding