HG10011996 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10011996
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Serine protease inhibitor
Location	Chr01: 16363108 .. 16363329 (-)
RNA-Seq Expression	HG10011996
Synteny	HG10011996

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTGTTTAGGAAAGTCAGTTTGGGCAGAGCTTGTAGGGAAGCGTGGAGAAGAAGCAGTGCAGATAATAAAGAAAGAGAATCCAAATGTAAGTCCTTACATAAGACGACCATGCCAATCGGAACGAGTTACTGCAAGCTATAGGTCGAACGTTGCAAGTCCAGTTGAAGTGGTCGTTGGCCGTCATGGAAAGGTGATTAAGGCCCCTGCCATTGGCTAA

mRNA sequence

ATGATTTGTTTAGGAAAGTCAGTTTGGGCAGAGCTTGTAGGGAAGCGTGGAGAAGAAGCAGTGCAGATAATAAAGAAAGAGAATCCAAATGTAAGTCCTTACATAAGACGACCATGCCAATCGGAACGAGTTACTGCAAGCTATAGGTCGAACGTTGCAAGTCCAGTTGAAGTGGTCGTTGGCCGTCATGGAAAGGTGATTAAGGCCCCTGCCATTGGCTAA

Coding sequence (CDS)

ATGATTTGTTTAGGAAAGTCAGTTTGGGCAGAGCTTGTAGGGAAGCGTGGAGAAGAAGCAGTGCAGATAATAAAGAAAGAGAATCCAAATGTAAGTCCTTACATAAGACGACCATGCCAATCGGAACGAGTTACTGCAAGCTATAGGTCGAACGTTGCAAGTCCAGTTGAAGTGGTCGTTGGCCGTCATGGAAAGGTGATTAAGGCCCCTGCCATTGGCTAA

Protein sequence

MICLGKSVWAELVGKRGEEAVQIIKKENPNVSPYIRRPCQSERVTASYRSNVASPVEVVVGRHGKVIKAPAIG

Homology

[Close]

BLAST of HG10011996 vs. NCBI nr
Match: KAB2086292.1 (hypothetical protein ES319_A04G020200v1 [Gossypium barbadense] >PPR84160.1 hypothetical protein GOBAR_AA36554 [Gossypium barbadense] >TYH21196.1 hypothetical protein ES288_A04G024000v1 [Gossypium darwinii] >TYI31963.1 hypothetical protein ES332_A04G023800v1 [Gossypium tomentosum])

HSP 1 Score: 55.1 bits (131), Expect = 3.0e-04
Identity = 32/71 (45.07%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 3  CLGKSVWAELVGKRGEEAVQIIKKENPNVSPYIRRPCQSERVTASYRSNVASPVEVVVGR 62
          C GKS W ELVGK GE A   I++ENPNV+  +        VT+ +R      V VVV R
Sbjct: 4  CPGKSSWPELVGKDGEVAKTTIERENPNVNAIVL--LDGTPVTSDFR---CDRVRVVVDR 63

Query: 63 HGKVIKAPAIG 74
          +G V++ P IG
Sbjct: 64 NGHVVRPPTIG 69

[Close]

BLAST of HG10011996 vs. NCBI nr
Match: XP_010687945.1 (PREDICTED: glu S.griseus protease inhibitor [Beta vulgaris subsp. vulgaris] >KMT02818.1 hypothetical protein BVRB_8g194010 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 53.9 bits (128), Expect = 6.7e-04
Identity = 30/71 (42.25%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 3  CLGKSVWAELVGKRGEEAVQIIKKENPNVSPYIRRPCQSERVTASYRSNVASPVEVVVGR 62
          C GK+ W ELVG+ G EA  I+++ENPNV  ++    Q   VTA +R      V V V  
Sbjct: 6  CPGKNEWPELVGENGPEAANIVERENPNVEAHV--VLQGSIVTADFR---CDRVRVWVNT 65

Query: 63 HGKVIKAPAIG 74
          +G V ++P IG
Sbjct: 66 NGVVYRSPRIG 71

[Close]

BLAST of HG10011996 vs. ExPASy Swiss-Prot
Match: P80211 (Trypsin/subtilisin inhibitor OS=Amaranthus caudatus OX=3567 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 5.3e-04
Identity = 26/70 (37.14%), Postives = 37/70 (52.86%), Query Frame = 0


Query: 3  CLGKSVWAELVGKRGEEAVQIIKKENPNVSPYIRRPCQSERVTASYRSNVASPVEVVVGR 62
          C GK  W ELVG+ G +A  II++ENPNV   ++   +    T  +R      V VVV  
Sbjct: 4  CPGKQEWPELVGEYGYKAAAIIERENPNVRSIVKH--ERSGFTKDFR---CDRVWVVVDS 63

Query: 63 HGKVIKAPAI 73
           G V++ P +
Sbjct: 64 TGVVVRTPRV 68

[Close]

BLAST of HG10011996 vs. ExPASy TrEMBL
Match: A0A2P5VZ93 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A04G020200v1 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-04
Identity = 32/71 (45.07%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 3  CLGKSVWAELVGKRGEEAVQIIKKENPNVSPYIRRPCQSERVTASYRSNVASPVEVVVGR 62
          C GKS W ELVGK GE A   I++ENPNV+  +        VT+ +R      V VVV R
Sbjct: 4  CPGKSSWPELVGKDGEVAKTTIERENPNVNAIVL--LDGTPVTSDFR---CDRVRVVVDR 63

Query: 63 HGKVIKAPAIG 74
          +G V++ P IG
Sbjct: 64 NGHVVRPPTIG 69

[Close]

BLAST of HG10011996 vs. ExPASy TrEMBL
Match: A0A5D2QUV5 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A04G023800v1 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-04
Identity = 32/71 (45.07%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 3  CLGKSVWAELVGKRGEEAVQIIKKENPNVSPYIRRPCQSERVTASYRSNVASPVEVVVGR 62
          C GKS W ELVGK GE A   I++ENPNV+  +        VT+ +R      V VVV R
Sbjct: 4  CPGKSSWPELVGKDGEVAKTTIERENPNVNAIVL--LDGTPVTSDFR---CDRVRVVVDR 63

Query: 63 HGKVIKAPAIG 74
          +G V++ P IG
Sbjct: 64 NGHVVRPPTIG 69

[Close]

BLAST of HG10011996 vs. ExPASy TrEMBL
Match: A0A5D2GV27 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A04G024000v1 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-04
Identity = 32/71 (45.07%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 3  CLGKSVWAELVGKRGEEAVQIIKKENPNVSPYIRRPCQSERVTASYRSNVASPVEVVVGR 62
          C GKS W ELVGK GE A   I++ENPNV+  +        VT+ +R      V VVV R
Sbjct: 4  CPGKSSWPELVGKDGEVAKTTIERENPNVNAIVL--LDGTPVTSDFR---CDRVRVVVDR 63

Query: 63 HGKVIKAPAIG 74
          +G V++ P IG
Sbjct: 64 NGHVVRPPTIG 69

[Close]

BLAST of HG10011996 vs. ExPASy TrEMBL
Match: A0A061FPX4 (Serine protease inhibitor OS=Theobroma cacao OX=3641 GN=TCM_043194 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.2e-04
Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 3  CLGKSVWAELVGKRGEEAVQIIKKENPNVSPYIRRPCQSERVTASYRSNVASPVEVVVGR 62
          C GKS W ELVGK+GE+A   I+KENP+V+  I    +   VTA +   + + V V V  
Sbjct: 6  CKGKSSWPELVGKKGEDAAARIEKENPHVNAVI--VLEGSFVTADF---LCTRVRVWVNT 65

Query: 63 HGKVIKAPAIG 74
          +G V + P IG
Sbjct: 66 YGIVTRVPTIG 71

[Close]

BLAST of HG10011996 vs. ExPASy TrEMBL
Match: A0A0K9RN89 (Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_047420 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.2e-04
Identity = 29/71 (40.85%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 3  CLGKSVWAELVGKRGEEAVQIIKKENPNVSPYIRRPCQSERVTASYRSNVASPVEVVVGR 62
          C GK+ W ELVG+ GE A +II++ENPNV+     P     V   +R      V + V  
Sbjct: 5  CPGKNAWPELVGENGERAAEIIREENPNVTQTTVLP-DGTPVILDFR---CDRVWIFVDC 64

Query: 63 HGKVIKAPAIG 74
          HG V++ P IG
Sbjct: 65 HGNVVRTPTIG 71

[Close]

BLAST of HG10011996 vs. TAIR 10
Match: AT3G46860.1 (Serine protease inhibitor, potato inhibitor I-type family protein )

HSP 1 Score: 41.2 bits (95), Expect = 4.2e-04
Identity = 26/65 (40.00%), Postives = 36/65 (55.38%), Query Frame = 0


Query: 9  WAELVGKRGEEAVQIIKKENPNVSPYIRRPCQSERVTASYRSNVASPVEVVVGRHGKVIK 68
          W ELVGK G+ A   I++ENPNV   + R    E+   ++  N    V V +G +G+V  
Sbjct: 26 WPELVGKNGQLAKMTIERENPNVLAIVLR--YGEKRIENFCCN---RVFVYLGSNGQVAD 85

Query: 69 APAIG 74
          AP IG
Sbjct: 86 APMIG 85

The following BLAST results are available for this feature:

BLAST of HG10011996 vs. NCBI nr


Match Name	E-value	Identity	Description
KAB2086292.1	3.0e-04	45.07	hypothetical protein ES319_A04G020200v1 [Gossypium barbadense] >PPR84160.1 hypot...	[more]
XP_010687945.1	6.7e-04	42.25	PREDICTED: glu S.griseus protease inhibitor [Beta vulgaris subsp. vulgaris] >KMT...	[more]

BLAST of HG10011996 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P80211	5.3e-04	37.14	Trypsin/subtilisin inhibitor OS=Amaranthus caudatus OX=3567 PE=1 SV=1	[more]

BLAST of HG10011996 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5VZ93	1.5e-04	45.07	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A04G020200v1 PE...	[more]
A0A5D2QUV5	1.5e-04	45.07	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A04G023800v1 P...	[more]
A0A5D2GV27	1.5e-04	45.07	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A04G024000v1 PE=...	[more]
A0A061FPX4	7.2e-04	43.66	Serine protease inhibitor OS=Theobroma cacao OX=3641 GN=TCM_043194 PE=3 SV=1	[more]
A0A0K9RN89	7.2e-04	40.85	Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_047420 PE=3 SV=1	[more]

BLAST of HG10011996 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46860.1	4.2e-04	40.00	Serine protease inhibitor, potato inhibitor I-type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000864	Proteinase inhibitor I13, potato inhibitor I	PFAM	PF00280	potato_inhibit	coord: 6..73 e-value: 2.6E-11 score: 44.0
IPR000864	Proteinase inhibitor I13, potato inhibitor I	PANTHER	PTHR33091	PROTEIN, PUTATIVE, EXPRESSED-RELATED	coord: 2..73
None	No IPR available	GENE3D	3.30.10.10	Trypsin Inhibitor V, subunit A	coord: 2..73 e-value: 1.4E-13 score: 53.0
None	No IPR available	PANTHER	PTHR33091:SF41	SERINE PROTEASE INHIBITOR, POTATO INHIBITOR I-TYPE FAMILY PROTEIN-RELATED	coord: 2..73
IPR036354	Proteinase inhibitor I13, potato inhibitor I superfamily	SUPERFAMILY	54654	CI-2 family of serine protease inhibitors	coord: 2..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10011996.1	HG10011996.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009611	response to wounding
molecular_function	GO:0004867	serine-type endopeptidase inhibitor activity