HG10011945 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10011945
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr01: 15671134 .. 15671340 (+)
RNA-Seq ExpressionHG10011945
SyntenyHG10011945
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGTGGTTGCCGGAGTTGGCTGTCGGAGGTGGTCGCTGGAGTTGGCCGCAACAATGGTGGTTGAATGTTGCCGGAGTTGGCTGCATGCGGTGGTTGCCGGAGTTGGTCGTCGGAGGTGATCGCCGAAATTGGTCGCCGGAGTTGGCCGTCGCATGTGGTTGCCGAAGTTGGTTATCGGAGGTGGTCACTGGTGATGTGAGCTGA

mRNA sequence

ATGTGGTGGTTGCCGGAGTTGGCTGTCGGAGGTGGTCGCTGGAGTTGGCCGCAACAATGGTGGTTGAATGTTGCCGGAGTTGGCTGCATGCGGTGGTTGCCGGAGTTGGTCGTCGGAGGTGATCGCCGAAATTGGTCGCCGGAGTTGGCCGTCGCATGTGGTTGCCGAAGTTGGTTATCGGAGGTGGTCACTGGTGATGTGAGCTGA

Coding sequence (CDS)

ATGTGGTGGTTGCCGGAGTTGGCTGTCGGAGGTGGTCGCTGGAGTTGGCCGCAACAATGGTGGTTGAATGTTGCCGGAGTTGGCTGCATGCGGTGGTTGCCGGAGTTGGTCGTCGGAGGTGATCGCCGAAATTGGTCGCCGGAGTTGGCCGTCGCATGTGGTTGCCGAAGTTGGTTATCGGAGGTGGTCACTGGTGATGTGAGCTGA

Protein sequence

MWWLPELAVGGGRWSWPQQWWLNVAGVGCMRWLPELVVGGDRRNWSPELAVACGCRSWLSEVVTGDVS
Homology
[Close]
BLAST of HG10011945 vs. NCBI nr
Match: XP_010501877.1 (PREDICTED: uncharacterized protein LOC104779199 [Camelina sativa] >XP_010501878.1 PREDICTED: uncharacterized protein LOC104779200 [Camelina sativa])

HSP 1 Score: 61.2 bits (147), Expect = 3.9e-06
Identity = 34/67 (50.75%), Postives = 36/67 (53.73%), Query Frame = 0 

Query: 4  LPELAVGGGRWSWPQQWWLNVAGVGCMRWLPELVVGGDRRNWSPELAVACG---C-RSWL 63
          LPEL  GGGR SW       VAGVG   W P +V G  RR WSPEL    G   C R W 
Sbjct: 25 LPELVAGGGRRSWSP---AVVAGVGRRSWSPAMVAGVGRRRWSPELVAGDGRRRCHRRWS 84

Query: 64 SEVVTGD 67
           E+V GD
Sbjct: 85 PELVAGD 88

The following BLAST results are available for this feature:
BLAST of HG10011945 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_010501877.13.9e-0650.75PREDICTED: uncharacterized protein LOC104779199 [Camelina sativa] >XP_010501878.... [more]
BLAST of HG10011945 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10011945 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10011945 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10011945.1HG10011945.1mRNA