HG10011943 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10011943
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	preprotein translocase subunit SCY2, chloroplastic
Location	Chr01: 15645918 .. 15648325 (-)
RNA-Seq Expression	HG10011943
Synteny	HG10011943

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCAACGCCTCACTGCACTCGTCTTCTCCGTCCTGCTCTGTTCCCTACTATACCCTCAAAGTTTCGAGGTTAGCCTCCTAAATTTCGGTTCGCGGGAAGACTATATTACATAGGAAGAAGGACAAATAGTTCAATTATAATGTTATTCTCTGCGCGTTTCATTTGATGTCTGTTCTCGTGAAACTAGAGTGATTGAAACTTATTTTCATTTTCTGGAAAGATTGTCCCTTGCAGGAGTTGTATTAGTTGTGTTTGTTTCCCTGTTGAATTAGCTAGTGGGTGAAATTACTTTACTTGCATAAAGATCTTTCACGTGGTAATGAAGTATGGGGCTTGTACCTGAACCACTTTTCTTCGTTGTTAACCTTTAATAGTTTTTACTCCATGGAGTTCTTAACACTAAGTTGAGAATGAGTCTGGGCACTGACTGTTTAGCTCAAGATAACAAATGGATACTAAGAAGCATGACGAATTGTAGACAAAGATGGCGTTTCAGGTTTGGGTAGAAACATTTATCGCATCAGTAGAGTTTGGTCTCTTTTACTGCACTCAAGGAAGCTATTTTTTTTTTTTTTTATGGGAATTTCAGACTCAATCTCATCTAGTAGTAGGCTGAAAGAGCTAGATTCAGGCGTCTTTGTCTGCTTGAGTGGTTGTGTAAATGTAATTAATCAAGTGTGAGAATGTTACGAACCATGGTAGTATGGGCTACCTTTGTCCCACATCAGTTAGAATGGAATGACCAATGTGGTACTTAAGTGGCTTGACTCTCCCACCTCAATAGCTGGCTTTTGGGGTGTGGTTTTCCAAGGTGCGTAAGTACCTAACAGAGAACACCAAACTCTCTTTTCATAATGTTTAGATCTCTTAGGTTTGTATGGGAAAATCTGTTTTCCTTTTTATATCAGAAATACTTTGATGAGGTGACCAACAATCAATTTATTATTTGGTTGTCAGCTTAGGATAGTAGGATAATTTCTCACCTCACCACCATGGATTTGTTCGATATTTTCTTCTTAGGTTTAAAGGTTGACTGAAAACTTATTTCCATTATTGAACACAGGCGAACATTCGATTTTTCCCAGGATTAAAATTGCTGCACTAATACATAATTTATGTCTAGTCGATTCTTCTGCTGACCATGGGAGTTTGCTTTGCTACAAAATAGTATTTTTCATAAAACATGTGTATTATGTCCTCACTTGGCTGCTTTCATTTGTACAGTTGCTGCAGCTTATGACGTCCAATTCTGTCATTTCAAGTTTGGTAGATCTGCCACTGTGATTAATTTCAACTCTCTAAAATTCAAGGGAAGAAATAATGTGTTATTGAATAGGCCTTTGGTCTCTAAAGTGAACCAAAAGTCGTTTGATTGTTTGTCAAATCAGTGCCAAAGCCGTATGAATGTCAAGGCAACATCTGAGCAGTGTCTAGACCTTGAAACTTTTTCACAGGAATCGAATGATGGGGATGCTTTTCTCACTTCTCCCAATGGCACTAACTTTGATATCAGGAAGCCTAAATCTAAAATGTTTAGAAATAGATTCTTGAATCTTCTACGTCTTCGTTCTGTTCTCAACAATGCTGCTGAATCATTTTTTAAAAGTGAAATACGACGAAGGTTATTTGTAACAGCAGTGCTAATTGTAATAAGTCGGGTTGGATACTTCATTCCTCTTCCTGGGTTTGATAGGAGGTTGATACCACAAGATTACCTTAGCTTTGTTTCTGGATCTGTTGGTGAGTTCATAAAATTCTATACATGCATGAGTTATCTACATTTTATATTCCTAATGTTGCAGAATTTAATTTAATTTCAGACTTTTTACTTAGATGATGTTGACTGTCTTTTTCTCATATTTATGTTTGTGGCAGATGAACTTGGTAATTTTACTACGGAGATGAAAATGTCTTTTTTCCAGCTAGGTATCAGTCCTCAGATTATAGCATCAATCATCATGCAGGTTTAACATTTTTCTTCATATCTATCTTCAATATCTTGATAGAGATGTAGAGACTGACATACTTAAAGTAGAAGGCATTTAAGAATATTGAAGGGCTTGTTCCCTTTAGAGAAACTTGGCTGCGAAATATTCAGAAACTTGTAGTAATGGAGAAGTTCTAATCCACGTCTACTCATTGAAGACAACATTGAAGGGTTAAACTTTTAGAGGGTGTTTAGGGCCAGGAGTGGAGTTGTGAAGTCTGGTGAGTTGTGAACTCTTGGGGCCCACAATGTAAGGAGTTAATAAGACATAAAATTGATGTTTTGTAGTCATGGGGCCCACAAACTCCTTGGCCAAACAAGGAGTGGAGTTCACAACTCCTACTCCCCAACTCCTACTTCTCAACAACTTCCTAAACTTTATAACTCCTTACTCCTTAGGCCGAACACACCCTTAA

mRNA sequence

ATGGAAGCAACGCCTCACTGCACTCGTCTTCTCCGTCCTGCTCTGTTCCCTACTATACCCTCAAAGTTTCGAGTTGCTGCAGCTTATGACGTCCAATTCTGTCATTTCAAGTTTGGTAGATCTGCCACTGTGATTAATTTCAACTCTCTAAAATTCAAGGGAAGAAATAATGTGTTATTGAATAGGCCTTTGGTCTCTAAAGTGAACCAAAAGTCGTTTGATTGTTTGTCAAATCAGTGCCAAAGCCGTATGAATGTCAAGGCAACATCTGAGCAGTGTCTAGACCTTGAAACTTTTTCACAGGAATCGAATGATGGGGATGCTTTTCTCACTTCTCCCAATGGCACTAACTTTGATATCAGGAAGCCTAAATCTAAAATGTTTAGAAATAGATTCTTGAATCTTCTACGTCTTCGTTCTGTTCTCAACAATGCTGCTGAATCATTTTTTAAAAGTGAAATACGACGAAGGTTATTTGTAACAGCAGTGCTAATTGTAATAAGTCGGGTTGGATACTTCATTCCTCTTCCTGGGTTTGATAGGAGGTTGATACCACAAGATTACCTTAGCTTTGTTTCTGGATCTGTTGATGAACTTGGTAATTTTACTACGGAGATGAAAATGTCTTTTTTCCAGCTAGTCATGGGGCCCACAAACTCCTTGGCCAAACAAGGAGTGGAGTTCACAACTCCTACTCCCCAACTCCTACTTCTCAACAACTTCCTAAACTTTATAACTCCTTACTCCTTAGGCCGAACACACCCTTAA

Coding sequence (CDS)

ATGGAAGCAACGCCTCACTGCACTCGTCTTCTCCGTCCTGCTCTGTTCCCTACTATACCCTCAAAGTTTCGAGTTGCTGCAGCTTATGACGTCCAATTCTGTCATTTCAAGTTTGGTAGATCTGCCACTGTGATTAATTTCAACTCTCTAAAATTCAAGGGAAGAAATAATGTGTTATTGAATAGGCCTTTGGTCTCTAAAGTGAACCAAAAGTCGTTTGATTGTTTGTCAAATCAGTGCCAAAGCCGTATGAATGTCAAGGCAACATCTGAGCAGTGTCTAGACCTTGAAACTTTTTCACAGGAATCGAATGATGGGGATGCTTTTCTCACTTCTCCCAATGGCACTAACTTTGATATCAGGAAGCCTAAATCTAAAATGTTTAGAAATAGATTCTTGAATCTTCTACGTCTTCGTTCTGTTCTCAACAATGCTGCTGAATCATTTTTTAAAAGTGAAATACGACGAAGGTTATTTGTAACAGCAGTGCTAATTGTAATAAGTCGGGTTGGATACTTCATTCCTCTTCCTGGGTTTGATAGGAGGTTGATACCACAAGATTACCTTAGCTTTGTTTCTGGATCTGTTGATGAACTTGGTAATTTTACTACGGAGATGAAAATGTCTTTTTTCCAGCTAGTCATGGGGCCCACAAACTCCTTGGCCAAACAAGGAGTGGAGTTCACAACTCCTACTCCCCAACTCCTACTTCTCAACAACTTCCTAAACTTTATAACTCCTTACTCCTTAGGCCGAACACACCCTTAA

Protein sequence

MEATPHCTRLLRPALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLLNRPLVSKVNQKSFDCLSNQCQSRMNVKATSEQCLDLETFSQESNDGDAFLTSPNGTNFDIRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDELGNFTTEMKMSFFQLVMGPTNSLAKQGVEFTTPTPQLLLLNNFLNFITPYSLGRTHP

Homology

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BLAST of HG10011943 vs. NCBI nr
Match: XP_038888195.1 (preprotein translocase subunit SCY2, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 397.5 bits (1020), Expect = 8.6e-107
Identity = 203/218 (93.12%), Postives = 208/218 (95.41%), Query Frame = 0


Query: 1   MEATPHCTRLLRPALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLL 60
           ME TPHCTRLLRPA FPTIPSKF VAA+YDVQFCHFKFGRSATVINFN LKFKGRNNVLL
Sbjct: 1   METTPHCTRLLRPAPFPTIPSKFLVAASYDVQFCHFKFGRSATVINFNPLKFKGRNNVLL 60

Query: 61  NRPLVSKVNQKSFDCLSNQCQ-SRMNVKATSEQCLDLETFSQESNDGDAFLTSPNGTNFD 120
           NRPLVSKVNQKS DCLSNQCQ SRMNVKATSEQCLDL+TFSQESNDGDAFLTSPN TNFD
Sbjct: 61  NRPLVSKVNQKSSDCLSNQCQSSRMNVKATSEQCLDLQTFSQESNDGDAFLTSPNATNFD 120

Query: 121 IRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF 180
           I KPKSKMFRNRFLNL+RLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF
Sbjct: 121 IWKPKSKMFRNRFLNLVRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF 180

Query: 181 DRRLIPQDYLSFVSGSVDELGNFTTEMKMSFFQLVMGP 218
           DRRLIPQDYLSFVSGSVDELG+FTTEMKMSFFQL + P
Sbjct: 181 DRRLIPQDYLSFVSGSVDELGDFTTEMKMSFFQLGISP 218

[Close]

BLAST of HG10011943 vs. NCBI nr
Match: XP_038888194.1 (preprotein translocase subunit SCY2, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 397.5 bits (1020), Expect = 8.6e-107
Identity = 203/218 (93.12%), Postives = 208/218 (95.41%), Query Frame = 0


Query: 1   MEATPHCTRLLRPALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLL 60
           ME TPHCTRLLRPA FPTIPSKF VAA+YDVQFCHFKFGRSATVINFN LKFKGRNNVLL
Sbjct: 1   METTPHCTRLLRPAPFPTIPSKFLVAASYDVQFCHFKFGRSATVINFNPLKFKGRNNVLL 60

Query: 61  NRPLVSKVNQKSFDCLSNQCQ-SRMNVKATSEQCLDLETFSQESNDGDAFLTSPNGTNFD 120
           NRPLVSKVNQKS DCLSNQCQ SRMNVKATSEQCLDL+TFSQESNDGDAFLTSPN TNFD
Sbjct: 61  NRPLVSKVNQKSSDCLSNQCQSSRMNVKATSEQCLDLQTFSQESNDGDAFLTSPNATNFD 120

Query: 121 IRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF 180
           I KPKSKMFRNRFLNL+RLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF
Sbjct: 121 IWKPKSKMFRNRFLNLVRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF 180

Query: 181 DRRLIPQDYLSFVSGSVDELGNFTTEMKMSFFQLVMGP 218
           DRRLIPQDYLSFVSGSVDELG+FTTEMKMSFFQL + P
Sbjct: 181 DRRLIPQDYLSFVSGSVDELGDFTTEMKMSFFQLGISP 218

[Close]

BLAST of HG10011943 vs. NCBI nr
Match: XP_004140093.2 (preprotein translocase subunit SCY2, chloroplastic [Cucumis sativus] >KAE8647324.1 hypothetical protein Csa_004274 [Cucumis sativus])

HSP 1 Score: 378.6 bits (971), Expect = 4.1e-101
Identity = 194/218 (88.99%), Postives = 202/218 (92.66%), Query Frame = 0


Query: 1   MEATPHCTRLLRPALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLL 60
           MEATP+CTRLLRP L  ++ SKF VAAAYDVQFCHFKFGRS  VINFN+ KFKGRNNVLL
Sbjct: 1   MEATPYCTRLLRPPLLHSVASKFPVAAAYDVQFCHFKFGRSTPVINFNTSKFKGRNNVLL 60

Query: 61  NRPLVSKVNQKSFDCLSNQCQ-SRMNVKATSEQCLDLETFSQESNDGDAFLTSPNGTNFD 120
            RPLVSKVNQKSFDC SNQCQ SRMNVKATSEQCLDLETFSQESNDGDAFLTS NGTNFD
Sbjct: 61  KRPLVSKVNQKSFDCFSNQCQNSRMNVKATSEQCLDLETFSQESNDGDAFLTSSNGTNFD 120

Query: 121 IRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF 180
           I KPKS+ FRNRFLNL+RLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF
Sbjct: 121 IWKPKSRAFRNRFLNLVRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF 180

Query: 181 DRRLIPQDYLSFVSGSVDELGNFTTEMKMSFFQLVMGP 218
           DRRLIPQDYLSFVSGSVDELG+FTTEMKMSFFQL + P
Sbjct: 181 DRRLIPQDYLSFVSGSVDELGDFTTEMKMSFFQLGISP 218

[Close]

BLAST of HG10011943 vs. NCBI nr
Match: XP_008449450.1 (PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Cucumis melo])

HSP 1 Score: 376.3 bits (965), Expect = 2.1e-100
Identity = 193/218 (88.53%), Postives = 201/218 (92.20%), Query Frame = 0


Query: 1   MEATPHCTRLLRPALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLL 60
           MEATP CTRLLRP L  ++ SKFRVAAAYDVQFCHFKFGRS  VINFN+ KFKGRNNVLL
Sbjct: 1   MEATPCCTRLLRPPLLHSVHSKFRVAAAYDVQFCHFKFGRSTPVINFNTSKFKGRNNVLL 60

Query: 61  NRPLVSKVNQKSFDCLSNQCQ-SRMNVKATSEQCLDLETFSQESNDGDAFLTSPNGTNFD 120
            RPLVSK+NQKSFDC SNQCQ SRMNVKATSEQCLDLETFSQESNDGDAFLTS NGTNFD
Sbjct: 61  KRPLVSKMNQKSFDCFSNQCQNSRMNVKATSEQCLDLETFSQESNDGDAFLTSSNGTNFD 120

Query: 121 IRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF 180
           I KPKS+ FRNRFLNL+RLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF
Sbjct: 121 IWKPKSRAFRNRFLNLVRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF 180

Query: 181 DRRLIPQDYLSFVSGSVDELGNFTTEMKMSFFQLVMGP 218
           DRRLIPQDYLSFVSGS DELG+FTTEMKMSFFQL + P
Sbjct: 181 DRRLIPQDYLSFVSGSADELGDFTTEMKMSFFQLGISP 218

[Close]

BLAST of HG10011943 vs. NCBI nr
Match: XP_022963692.1 (preprotein translocase subunit SCY2, chloroplastic [Cucurbita moschata] >XP_022963693.1 preprotein translocase subunit SCY2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 375.6 bits (963), Expect = 3.5e-100
Identity = 192/218 (88.07%), Postives = 202/218 (92.66%), Query Frame = 0


Query: 1   MEATPHCTRLLRPALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLL 60
           MEA P CTRL  PALFPT PSKFRVAAAYDVQFC  KFGRSA+VINFNSLKFKGRNNVLL
Sbjct: 1   MEAAPLCTRLFPPALFPTKPSKFRVAAAYDVQFCPLKFGRSASVINFNSLKFKGRNNVLL 60

Query: 61  NRPLVSKVNQKSFDCLSNQCQ-SRMNVKATSEQCLDLETFSQESNDGDAFLTSPNGTNFD 120
           +RP VSKVN+KSFDCLSNQC+ SRMNVKATSEQCLDLETFSQE NDGDAF TSPNGTN D
Sbjct: 61  SRPFVSKVNEKSFDCLSNQCRSSRMNVKATSEQCLDLETFSQELNDGDAFFTSPNGTNSD 120

Query: 121 IRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF 180
             KP+SKMFRNRFLNL+RLRSVLNNAAESFFKSEIRRRLFVTAVLIVISR+GYFIPLPG+
Sbjct: 121 TWKPRSKMFRNRFLNLVRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGY 180

Query: 181 DRRLIPQDYLSFVSGSVDELGNFTTEMKMSFFQLVMGP 218
           DRRLIPQDYLSFVSGSVDELG+FTTEMKMSFFQL + P
Sbjct: 181 DRRLIPQDYLSFVSGSVDELGDFTTEMKMSFFQLGISP 218

[Close]

BLAST of HG10011943 vs. ExPASy Swiss-Prot
Match: F4IQV7 (Preprotein translocase subunit SCY2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SCY2 PE=2 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.4e-35
Identity = 91/182 (50.00%), Postives = 114/182 (62.64%), Query Frame = 0


Query: 40  RSATVINFNSLKFKGRNNVLLNRPLVSKVNQKSFDCLSNQCQSRMNVKATSEQ----CLD 99
           R     N N  + +  +++ +NR  +    +KSF    N      +   +SE+     LD
Sbjct: 38  RKCLTTNLNMSRTRQGHSIQMNRRHLLMKERKSFSI--NYSDKFRDDSMSSEEMHTDALD 97

Query: 100 LETFSQESNDGDAFLTSPNGTNFDIRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIR 159
           +E    +S D      S         +PKS  FRNRFL+ +R+ SVLN AAE FFKSEIR
Sbjct: 98  VEIIPPDSQDIRNSQNSAVSNTLQDDRPKS--FRNRFLDFVRISSVLNTAAERFFKSEIR 157

Query: 160 RRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDELGNFTTEMKMSFFQLVM 218
           RRLFVTAVL+V+SRVGYFIPLPGFDRRLIPQDYLSFVSGSV+ELG F  E+K+S FQL +
Sbjct: 158 RRLFVTAVLLVLSRVGYFIPLPGFDRRLIPQDYLSFVSGSVEELGEFGAEIKLSLFQLGL 215

[Close]

BLAST of HG10011943 vs. ExPASy TrEMBL
Match: A0A0A0KHN4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G410030 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 2.0e-101
Identity = 194/218 (88.99%), Postives = 202/218 (92.66%), Query Frame = 0


Query: 1   MEATPHCTRLLRPALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLL 60
           MEATP+CTRLLRP L  ++ SKF VAAAYDVQFCHFKFGRS  VINFN+ KFKGRNNVLL
Sbjct: 1   MEATPYCTRLLRPPLLHSVASKFPVAAAYDVQFCHFKFGRSTPVINFNTSKFKGRNNVLL 60

Query: 61  NRPLVSKVNQKSFDCLSNQCQ-SRMNVKATSEQCLDLETFSQESNDGDAFLTSPNGTNFD 120
            RPLVSKVNQKSFDC SNQCQ SRMNVKATSEQCLDLETFSQESNDGDAFLTS NGTNFD
Sbjct: 61  KRPLVSKVNQKSFDCFSNQCQNSRMNVKATSEQCLDLETFSQESNDGDAFLTSSNGTNFD 120

Query: 121 IRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF 180
           I KPKS+ FRNRFLNL+RLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF
Sbjct: 121 IWKPKSRAFRNRFLNLVRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF 180

Query: 181 DRRLIPQDYLSFVSGSVDELGNFTTEMKMSFFQLVMGP 218
           DRRLIPQDYLSFVSGSVDELG+FTTEMKMSFFQL + P
Sbjct: 181 DRRLIPQDYLSFVSGSVDELGDFTTEMKMSFFQLGISP 218

[Close]

BLAST of HG10011943 vs. ExPASy TrEMBL
Match: A0A1S3BM25 (preprotein translocase subunit SCY2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491333 PE=3 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 9.9e-101
Identity = 193/218 (88.53%), Postives = 201/218 (92.20%), Query Frame = 0


Query: 1   MEATPHCTRLLRPALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLL 60
           MEATP CTRLLRP L  ++ SKFRVAAAYDVQFCHFKFGRS  VINFN+ KFKGRNNVLL
Sbjct: 1   MEATPCCTRLLRPPLLHSVHSKFRVAAAYDVQFCHFKFGRSTPVINFNTSKFKGRNNVLL 60

Query: 61  NRPLVSKVNQKSFDCLSNQCQ-SRMNVKATSEQCLDLETFSQESNDGDAFLTSPNGTNFD 120
            RPLVSK+NQKSFDC SNQCQ SRMNVKATSEQCLDLETFSQESNDGDAFLTS NGTNFD
Sbjct: 61  KRPLVSKMNQKSFDCFSNQCQNSRMNVKATSEQCLDLETFSQESNDGDAFLTSSNGTNFD 120

Query: 121 IRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF 180
           I KPKS+ FRNRFLNL+RLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF
Sbjct: 121 IWKPKSRAFRNRFLNLVRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF 180

Query: 181 DRRLIPQDYLSFVSGSVDELGNFTTEMKMSFFQLVMGP 218
           DRRLIPQDYLSFVSGS DELG+FTTEMKMSFFQL + P
Sbjct: 181 DRRLIPQDYLSFVSGSADELGDFTTEMKMSFFQLGISP 218

[Close]

BLAST of HG10011943 vs. ExPASy TrEMBL
Match: A0A6J1HFX8 (preprotein translocase subunit SCY2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111463947 PE=3 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.7e-100
Identity = 192/218 (88.07%), Postives = 202/218 (92.66%), Query Frame = 0


Query: 1   MEATPHCTRLLRPALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLL 60
           MEA P CTRL  PALFPT PSKFRVAAAYDVQFC  KFGRSA+VINFNSLKFKGRNNVLL
Sbjct: 1   MEAAPLCTRLFPPALFPTKPSKFRVAAAYDVQFCPLKFGRSASVINFNSLKFKGRNNVLL 60

Query: 61  NRPLVSKVNQKSFDCLSNQCQ-SRMNVKATSEQCLDLETFSQESNDGDAFLTSPNGTNFD 120
           +RP VSKVN+KSFDCLSNQC+ SRMNVKATSEQCLDLETFSQE NDGDAF TSPNGTN D
Sbjct: 61  SRPFVSKVNEKSFDCLSNQCRSSRMNVKATSEQCLDLETFSQELNDGDAFFTSPNGTNSD 120

Query: 121 IRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF 180
             KP+SKMFRNRFLNL+RLRSVLNNAAESFFKSEIRRRLFVTAVLIVISR+GYFIPLPG+
Sbjct: 121 TWKPRSKMFRNRFLNLVRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGY 180

Query: 181 DRRLIPQDYLSFVSGSVDELGNFTTEMKMSFFQLVMGP 218
           DRRLIPQDYLSFVSGSVDELG+FTTEMKMSFFQL + P
Sbjct: 181 DRRLIPQDYLSFVSGSVDELGDFTTEMKMSFFQLGISP 218

[Close]

BLAST of HG10011943 vs. ExPASy TrEMBL
Match: A0A6J1HWW7 (preprotein translocase subunit SCY2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466991 PE=3 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 1.1e-94
Identity = 185/218 (84.86%), Postives = 195/218 (89.45%), Query Frame = 0


Query: 1   MEATPHCTRLLRPALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLL 60
           MEA P CTR     LFPT PSKFRVAAAYDVQFC  KFGRSA VINFNSLK KGRNNVLL
Sbjct: 1   MEAAPICTR-----LFPTKPSKFRVAAAYDVQFCPLKFGRSAAVINFNSLKCKGRNNVLL 60

Query: 61  NRPLVSKVNQKSFDCLSNQCQ-SRMNVKATSEQCLDLETFSQESNDGDAFLTSPNGTNFD 120
           +RP VSKVN+KSFDCLSNQC+ SRMNVKATSEQCLDLETFSQE NDGD F TSPNGTN +
Sbjct: 61  SRPFVSKVNEKSFDCLSNQCRSSRMNVKATSEQCLDLETFSQELNDGDVFFTSPNGTNSE 120

Query: 121 IRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF 180
             KP+SKMFRNRFLNL+RLRS LNNAAESFFKSEIRRRLFVTAVLIVISR+GYFIPLPG+
Sbjct: 121 TWKPRSKMFRNRFLNLVRLRSFLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGY 180

Query: 181 DRRLIPQDYLSFVSGSVDELGNFTTEMKMSFFQLVMGP 218
           DRRLIPQDYLSFVSGSVDELG+FTTEMKMSFFQL + P
Sbjct: 181 DRRLIPQDYLSFVSGSVDELGDFTTEMKMSFFQLGISP 213

[Close]

BLAST of HG10011943 vs. ExPASy TrEMBL
Match: A0A6J1DS34 (preprotein translocase subunit SCY2, chloroplastic isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022689 PE=3 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 2.5e-88
Identity = 176/220 (80.00%), Postives = 190/220 (86.36%), Query Frame = 0


Query: 1   MEATPHCTRLLR--PALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNV 60
           MEAT H TRLL   P LFPT  SKFRVA AYDV+FC  +FGRS+TVIN  SL+FKGR + 
Sbjct: 1   MEATHHSTRLLHPIPILFPTRTSKFRVAVAYDVRFCRLQFGRSSTVINSKSLEFKGRTHX 60

Query: 61  LLNRPLVSKVNQKSFDCLSNQCQ-SRMNVKATSEQCLDLETFSQESNDGDAFLTSPNGTN 120
           L NR    KVNQKSF+CLSNQCQ S +NVKATSEQCLDLETF QES DGDAFLTSPNG++
Sbjct: 61  LSNRHFAYKVNQKSFECLSNQCQSSHLNVKATSEQCLDLETFPQESQDGDAFLTSPNGSD 120

Query: 121 FDIRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLP 180
           FD  KP+S+ F NRFLNL+RLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLP
Sbjct: 121 FDTWKPRSQKFMNRFLNLVRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLP 180

Query: 181 GFDRRLIPQDYLSFVSGSVDELGNFTTEMKMSFFQLVMGP 218
           GFDRRLIPQDYLSFVSGSVDELG+FTTEMKMSFFQL + P
Sbjct: 181 GFDRRLIPQDYLSFVSGSVDELGDFTTEMKMSFFQLGISP 220

[Close]

BLAST of HG10011943 vs. TAIR 10
Match: AT2G31530.1 (SecY protein transport family protein )

HSP 1 Score: 151.4 bits (381), Expect = 1.0e-36
Identity = 91/182 (50.00%), Postives = 114/182 (62.64%), Query Frame = 0


Query: 40  RSATVINFNSLKFKGRNNVLLNRPLVSKVNQKSFDCLSNQCQSRMNVKATSEQ----CLD 99
           R     N N  + +  +++ +NR  +    +KSF    N      +   +SE+     LD
Sbjct: 38  RKCLTTNLNMSRTRQGHSIQMNRRHLLMKERKSFSI--NYSDKFRDDSMSSEEMHTDALD 97

Query: 100 LETFSQESNDGDAFLTSPNGTNFDIRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIR 159
           +E    +S D      S         +PKS  FRNRFL+ +R+ SVLN AAE FFKSEIR
Sbjct: 98  VEIIPPDSQDIRNSQNSAVSNTLQDDRPKS--FRNRFLDFVRISSVLNTAAERFFKSEIR 157

Query: 160 RRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDELGNFTTEMKMSFFQLVM 218
           RRLFVTAVL+V+SRVGYFIPLPGFDRRLIPQDYLSFVSGSV+ELG F  E+K+S FQL +
Sbjct: 158 RRLFVTAVLLVLSRVGYFIPLPGFDRRLIPQDYLSFVSGSVEELGEFGAEIKLSLFQLGL 215

The following BLAST results are available for this feature:

BLAST of HG10011943 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888195.1	8.6e-107	93.12	preprotein translocase subunit SCY2, chloroplastic isoform X2 [Benincasa hispida...	[more]
XP_038888194.1	8.6e-107	93.12	preprotein translocase subunit SCY2, chloroplastic isoform X1 [Benincasa hispida...	[more]
XP_004140093.2	4.1e-101	88.99	preprotein translocase subunit SCY2, chloroplastic [Cucumis sativus] >KAE8647324...	[more]
XP_008449450.1	2.1e-100	88.53	PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Cucumis melo]	[more]
XP_022963692.1	3.5e-100	88.07	preprotein translocase subunit SCY2, chloroplastic [Cucurbita moschata] >XP_0229...	[more]

BLAST of HG10011943 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IQV7	1.4e-35	50.00	Preprotein translocase subunit SCY2, chloroplastic OS=Arabidopsis thaliana OX=37...	[more]

BLAST of HG10011943 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHN4	2.0e-101	88.99	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G410030 PE=4 SV=1	[more]
A0A1S3BM25	9.9e-101	88.53	preprotein translocase subunit SCY2, chloroplastic OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A6J1HFX8	1.7e-100	88.07	preprotein translocase subunit SCY2, chloroplastic OS=Cucurbita moschata OX=3662...	[more]
A0A6J1HWW7	1.1e-94	84.86	preprotein translocase subunit SCY2, chloroplastic OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1DS34	2.5e-88	80.00	preprotein translocase subunit SCY2, chloroplastic isoform X2 OS=Momordica chara...	[more]

BLAST of HG10011943 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31530.1	1.0e-36	50.00	SecY protein transport family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023201	SecY domain superfamily	GENE3D	1.10.3370.10	SecY subunit domain	coord: 141..220 e-value: 8.2E-10 score: 40.0
IPR023201	SecY domain superfamily	SUPERFAMILY	103491	Preprotein translocase SecY subunit	coord: 138..213
None	No IPR available	PANTHER	PTHR10906:SF2	PREPROTEIN TRANSLOCASE SUBUNIT SCY2, CHLOROPLASTIC	coord: 132..217
IPR002208	SecY/SEC61-alpha family	PANTHER	PTHR10906	SECY/SEC61-ALPHA FAMILY MEMBER	coord: 132..217

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10011943.1	HG10011943.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane