HG10011925 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10011925
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	protein PALE CRESS, chloroplastic
Location	Chr01: 15461076 .. 15464112 (-)
RNA-Seq Expression	HG10011925
Synteny	HG10011925

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCACAGGTGCTTTGTCTGAGATTCTCACCAGTTCCACTATTGCCTTCTACTTCCCCATTCTTACCAAAGCTTAGGACCTCTCGTTTCTCGAAGCACTATTCATCTGGTCCTGGTTAGCCCTCTTACAGCTTGCTTAATCACTCTTCAGGTACAGATGTTCATCGTAACTTCTCATTTTGGTCACGGTTTGATGGCCAGTTTTACGGAGGAGCTTCAGCAAGGAAGAGCCGCTTATTGATGGGCTTCCTAAAGAGTATTACGATGATGTACGCGGATAATTGAATTTAACTACTCCCTAGTTTGCTTTTTTGCTTGATTGAGCTTGTAATTCTTCATTTTTTCCTTCTTGTTTGCAATTTATGTTCGTTATTTGGTATTTTCTATTTTCTGGTACTGGGGTAAAAACATGAACACTTACAGAGATGACAATGATGGATTTTCCTTATGACACATACTTGTTGTCTATATCCTGCTGAAGCTGAACCACTTTCTAACATAAATTAAAGACAGTGGCTGTTCTTGGCGATTTTAGGGGAAATTTCCTGTTCTACCATTTTTTTTGGTTAGTTAAAATGTCCTTAAGTTTGTGACCATGATTGAACTTCGTAAAACAACTTGTGCTTCCTACTCTACTAATTATTCTAATGCTGTCAAAAGTTCGTGACCATGAGAACGAGGAAGAGCAATGGAGCAGGGGAGAATGAGAAGGAGAGACAGCGTAATGGAAGTATAGAAAATGAGTTGAAGGTTATTTTACAAAGCTTACAAGATGCAAATTATGTTTGATCTCATTAATTTTGAGGCTGGATAGATTTCATCGAGGTAGTCAAAACAGTGTGATAGCCATTGGAGGGAATCGATGCGTTTTTCTTATTAACTGACCAACTGACCATCAGAAAGGACATATGTGGGTCAAAGAAATGTAATGAGCATTTTGGTTAAAAGGAAGTGATCAATATGTATTTTTTCTAATCTTCAATCTTCTCTGACAAAAATTTGTTAGTTAAACATAAAAGCAAAGTATAATATGTGCTGCCCTGGACCTAGAAGAAGAAAAGATACCTCTTCGATGAGAAATGGATGAATTGGACATCCTTACTTTGTTACTGGAAAATGTTAGGCTGGGTCAGAATAGTTATGTTTTTTTGTGGAAGCTCTTAAACTCTGGCATTTTTTCAGCAAAATCAGCCTCTTTAGCCCTCCACGAAGAGAGAGGAATTTTGGCCCTGGACTTTTGCAAGTTGATCTGAGAAGAATTATGTCCTGAAAAGGTTACAATTTTCCTTTGCTCTTAGTAGCATAAGTTCAAAGAGGGGCATCCTTATTCAACTGAAAACCAACAACCCCCCCCCCCCCCCCCCCCCCCCCATTTTGTGTCATGTCTAAAAGTAACGAAGAATCTCTCTCCCACCTTTTCATTCACTGTAGTTTTATCTCATGTTTTCCTGTGGGAACTTACAATAAGCTAAAACCTTGGGCCATACAAAGTGCTTAATAGATAGGATGATGATGCCTACAAGATTGAGCTTCCAGACGACCTCAGGATCAATCCTAATTTTTAACGTTATAGACATTTCTCTAATATCATGTTCAACTCTTTCACTTTGGCAAATTAACCCTATAGTTTCTTATCCACCAAAAAAAAAAAAAAAAAAAAGAAAGAAAAAAAAAGAAAGAAAAAAAAAAGAAGAAAGAAAACCCTTGTTTTTTTTTTTTTTCAAGGGGGCAAAACTAATGTAGGCCATTTGGGCTTTATGCATTCTTCTATTCAGATTGGGTGGCTATGGCCTTTATTCTCTGTTATGGCTGGTTTGAAGAACCTTTAGTTATTTGTTATTCAATCTTTAAAGTTTGTTAAGTGGTTAGACAGCTTCTTTTCTCAAACAGATGGATTGAATCATCATTGGCGGTAGTTAGACAGCTTCTTCAAAGTACCCTTTAAGCTGTGTAAATACTACCCCTTTCTATTTGACAAAAGATTTGGATCATTTTAAATAAAATTACAACTCATTGGTTTACACCATAATGTAATATGTTCTTGGATGTTGGCTTTCGAAGCCTCTGGATGCTACAGTTGTAAATCTCTTCTCCAAGATCTTGAACTCCTGCAAAAAGATCTTAGGCCACCAATCATGCTCCATCTACCACCCTAAAAGGGTTAGTATTCATTTGGAAATTTTGGAACTCCAAATTGTTGGGTTGGAACTCCTGCAAAAAGATCTTTCGAAGCCTCTGGATGCTACAGTTTAGAATTCTTTCATTCATGCTCTCTCCAAATTGTTGCATTTTGTGAAAAATTGCATATGAATTCTAGGATCCTTTTACTTCACTATGGCCAAACTTCTAAATTTTGGACCATGTTTTCCTCTTTTGGGTTGTCTTATACTTTTGATCTCACAGTGGCTAGCGACGTCTTCTTTCTTTTCCCTGATCATTCATTCAAAGACAAGGAAAAAAATTCTTTGGCTCCACATTCTTGGAAATTTCCTCTGGTGTACATGGATAGAAATAAATCACACATTTTCTTAGAAACAAATAAAAGATTTTTTTTTTAATCTTTTGAGGACATCATCCTTTTTGTTACATTTTCTCAGAGTAGGCTTAGTAAAGCTTTTTGTAGTTATTTTTCATACTCTGGTTAATTAGAAGGCTTTCTTGTTGACTCATTTAGCTTTGGGGTTGGCTTTCCTCCCCTTTTGTATCTTTCGTTAATGGAATATCGTGTTTATGTTGTTATTTTCGTGTGTGTGTTTTCTAATAAATAAAATATAAAGGAAAAAGGTTAAAAATCAGATATTTACTCGTTTTATGTTAGGAATGGCAAGCCCGACAAAGAGAGAAGACGAAGGAGTTACATCGAAGGCGTCAAGAGGAAGATGAAGAAGAGGACAGAAAGGTAAAAGAATATCGTGAAATTGGAATGCGTCTGAAAGAATTTCCAGAAGAAGATGTCAGAAAAGCTCGAAAACTGGTTTCAAGCTTTATTAGAGCTGCTGAAGAAGTTGAAGAGGTAATCAACGATTGGCAGTAG

mRNA sequence

ATGGAGGCACAGGTGCTTTGTCTGAGATTCTCACCAGTTCCACTATTGCCTTCTACTTCCCCATTCTTACCAAAGCTTAGGACCTCTCGTTTCTCGAAGCACTATTCATCTGGTCCTGTTTTACGGAGGAGCTTCAGCAAGGAAGAGCCGCTTATTGATGGGCTTCCTAAAGAGTATTACGATGATCCTCTGGATGCTACAGTTGTAAATCTCTTCTCCAAGATCTTGAACTCCTGCAAAAAGATCTTAGGCCACCAATCATGCTCCATCTACCACCCTAAAAGGGAATGGCAAGCCCGACAAAGAGAGAAGACGAAGGAGTTACATCGAAGGCGTCAAGAGGAAGATGAAGAAGAGGACAGAAAGGTAAAAGAATATCGTGAAATTGGAATGCGTCTGAAAGAATTTCCAGAAGAAGATGTCAGAAAAGCTCGAAAACTGGTTTCAAGCTTTATTAGAGCTGCTGAAGAAGTTGAAGAGGTAATCAACGATTGGCAGTAG

Coding sequence (CDS)

ATGGAGGCACAGGTGCTTTGTCTGAGATTCTCACCAGTTCCACTATTGCCTTCTACTTCCCCATTCTTACCAAAGCTTAGGACCTCTCGTTTCTCGAAGCACTATTCATCTGGTCCTGTTTTACGGAGGAGCTTCAGCAAGGAAGAGCCGCTTATTGATGGGCTTCCTAAAGAGTATTACGATGATCCTCTGGATGCTACAGTTGTAAATCTCTTCTCCAAGATCTTGAACTCCTGCAAAAAGATCTTAGGCCACCAATCATGCTCCATCTACCACCCTAAAAGGGAATGGCAAGCCCGACAAAGAGAGAAGACGAAGGAGTTACATCGAAGGCGTCAAGAGGAAGATGAAGAAGAGGACAGAAAGGTAAAAGAATATCGTGAAATTGGAATGCGTCTGAAAGAATTTCCAGAAGAAGATGTCAGAAAAGCTCGAAAACTGGTTTCAAGCTTTATTAGAGCTGCTGAAGAAGTTGAAGAGGTAATCAACGATTGGCAGTAG

Protein sequence

MEAQVLCLRFSPVPLLPSTSPFLPKLRTSRFSKHYSSGPVLRRSFSKEEPLIDGLPKEYYDDPLDATVVNLFSKILNSCKKILGHQSCSIYHPKREWQARQREKTKELHRRRQEEDEEEDRKVKEYREIGMRLKEFPEEDVRKARKLVSSFIRAAEEVEEVINDWQ

Homology

[Close]

BLAST of HG10011925 vs. NCBI nr
Match: XP_038888470.1 (protein PALE CRESS, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 203.0 bits (515), Expect = 2.0e-48
Identity = 119/164 (72.56%), Postives = 121/164 (73.78%), Query Frame = 0


Query: 1   MEAQVLCLRFSPVPLLPSTSPFLPKLRTSRFSKHYSSGPVLRRSFSKEEPLIDGLPKEYY 60
           MEAQVLCLRFSPVP L STS  LPKL TSRF KHYSSGPVLRRS SKEEPLIDGLPKEYY
Sbjct: 1   MEAQVLCLRFSPVPPLLSTSSILPKLWTSRFLKHYSSGPVLRRSLSKEEPLIDGLPKEYY 60

Query: 61  DDPLDATVVNLFSKILNSCKKILGHQSCSIYHPKREWQARQREKTKELHRRRQEEDEEED 120
           DD                                 EWQARQREKTKELHRRRQEEDEEED
Sbjct: 61  DD---------------------------------EWQARQREKTKELHRRRQEEDEEED 120

Query: 121 RKVKEYREIGMRLKEFPEEDVRKARKLVSSFIRAAEEVEEVIND 165
           RKV+EYREIGMRLK FPEEDVRKARKLVSSFIRAAEEVEE I +
Sbjct: 121 RKVEEYREIGMRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEE 131

[Close]

BLAST of HG10011925 vs. NCBI nr
Match: XP_008449384.1 (PREDICTED: protein PALE CRESS, chloroplastic [Cucumis melo] >TYK30069.1 protein PALE CRESS [Cucumis melo var. makuwa])

HSP 1 Score: 196.4 bits (498), Expect = 1.9e-46
Identity = 116/164 (70.73%), Postives = 120/164 (73.17%), Query Frame = 0


Query: 1   MEAQVLCLRFSPVPLLPSTSPFLPKLRTSRFSKHYSSGPVLRRSFSKEEPLIDGLPKEYY 60
           MEAQVLCLRFS +P L ST+P L KL TSR SKHYSSG VLRRSFSKEEPLIDGLPKEYY
Sbjct: 1   MEAQVLCLRFSSLPQLLSTTPILSKLWTSRSSKHYSSGLVLRRSFSKEEPLIDGLPKEYY 60

Query: 61  DDPLDATVVNLFSKILNSCKKILGHQSCSIYHPKREWQARQREKTKELHRRRQEEDEEED 120
           DD                                 EWQARQREKTKELHRRRQEEDEEED
Sbjct: 61  DD---------------------------------EWQARQREKTKELHRRRQEEDEEED 120

Query: 121 RKVKEYREIGMRLKEFPEEDVRKARKLVSSFIRAAEEVEEVIND 165
           RKV+EY EIGMRLKEFPEEDVRKARKLVSSFIRAAEEVEE I +
Sbjct: 121 RKVQEYHEIGMRLKEFPEEDVRKARKLVSSFIRAAEEVEEKIEE 131

[Close]

BLAST of HG10011925 vs. NCBI nr
Match: XP_004140086.1 (protein PALE CRESS, chloroplastic [Cucumis sativus] >KGN47871.1 hypothetical protein Csa_002854 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 2.6e-43
Identity = 112/164 (68.29%), Postives = 117/164 (71.34%), Query Frame = 0


Query: 1   MEAQVLCLRFSPVPLLPSTSPFLPKLRTSRFSKHYSSGPVLRRSFSKEEPLIDGLPKEYY 60
           MEAQ+LCLRFS +P L ST+P LPKL TS  S   SSG VLRRS SKEEPLIDGLPKEYY
Sbjct: 1   MEAQLLCLRFSSLPPLLSTTPILPKLWTSPSSHRCSSGLVLRRSLSKEEPLIDGLPKEYY 60

Query: 61  DDPLDATVVNLFSKILNSCKKILGHQSCSIYHPKREWQARQREKTKELHRRRQEEDEEED 120
           DD                                 EWQARQREKTKELHRRRQEEDEEED
Sbjct: 61  DD---------------------------------EWQARQREKTKELHRRRQEEDEEED 120

Query: 121 RKVKEYREIGMRLKEFPEEDVRKARKLVSSFIRAAEEVEEVIND 165
           RKV+EYREIGMRLKEFPEEDVRKARKLVSSFIRAAEEVEE I +
Sbjct: 121 RKVEEYREIGMRLKEFPEEDVRKARKLVSSFIRAAEEVEEKIEE 131

[Close]

BLAST of HG10011925 vs. NCBI nr
Match: XP_022995861.1 (protein PALE CRESS, chloroplastic [Cucurbita maxima])

HSP 1 Score: 184.5 bits (467), Expect = 7.5e-43
Identity = 112/164 (68.29%), Postives = 115/164 (70.12%), Query Frame = 0


Query: 1   MEAQVLCLRFSPVPLLPSTSPFLPKLRTSRFSKHYSSGPVLRRSFSKEEPLIDGLPKEYY 60
           M AQVL LR SPVP LPS SP LPKL TS F K YSS PVLRRS SKEEPLIDGLPKEYY
Sbjct: 1   MLAQVLWLRCSPVPPLPSASPTLPKLSTSYFLKLYSSRPVLRRSLSKEEPLIDGLPKEYY 60

Query: 61  DDPLDATVVNLFSKILNSCKKILGHQSCSIYHPKREWQARQREKTKELHRRRQEEDEEED 120
           DD                                 EWQARQREKTKELHRRRQEEDEEE+
Sbjct: 61  DD---------------------------------EWQARQREKTKELHRRRQEEDEEEE 120

Query: 121 RKVKEYREIGMRLKEFPEEDVRKARKLVSSFIRAAEEVEEVIND 165
           RKV+EYREIGMRLK FPEEDVRKARKLVSSFIRA EEVEE I +
Sbjct: 121 RKVEEYREIGMRLKGFPEEDVRKARKLVSSFIRAVEEVEEKIEE 131

[Close]

BLAST of HG10011925 vs. NCBI nr
Match: XP_023534033.1 (protein PALE CRESS, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.4 bits (459), Expect = 6.3e-42
Identity = 111/164 (67.68%), Postives = 114/164 (69.51%), Query Frame = 0


Query: 1   MEAQVLCLRFSPVPLLPSTSPFLPKLRTSRFSKHYSSGPVLRRSFSKEEPLIDGLPKEYY 60
           M AQVL LR SPVP LPS SP LPKL TS F K YSS PVLRRS SKEEPLIDGLPKEYY
Sbjct: 1   MLAQVLWLRCSPVPPLPSASPTLPKLSTSYFLKLYSSRPVLRRSLSKEEPLIDGLPKEYY 60

Query: 61  DDPLDATVVNLFSKILNSCKKILGHQSCSIYHPKREWQARQREKTKELHRRRQEEDEEED 120
           DD                                 EWQARQREKTKELHRRRQEEDEEE+
Sbjct: 61  DD---------------------------------EWQARQREKTKELHRRRQEEDEEEE 120

Query: 121 RKVKEYREIGMRLKEFPEEDVRKARKLVSSFIRAAEEVEEVIND 165
           RKV+EYREIGMRLK FPEEDV KARKLVSSFIRA EEVEE I +
Sbjct: 121 RKVEEYREIGMRLKGFPEEDVIKARKLVSSFIRAVEEVEEKIEE 131

[Close]

BLAST of HG10011925 vs. ExPASy Swiss-Prot
Match: Q39089 (Protein PALE CRESS, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAC PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-22
Identity = 66/123 (53.66%), Postives = 80/123 (65.04%), Query Frame = 0


Query: 42  RRSFSKEEPLIDGLPKEYYDDPLDATVVNLFSKILNSCKKILGHQSCSIYHPKREWQARQ 101
           R S + +E L++G+P EYYDD                                 EWQARQ
Sbjct: 41  RCSGNNDEVLLEGMPPEYYDD---------------------------------EWQARQ 100

Query: 102 REKTKELHRRRQEEDEEEDRKVKEYREIGMRLKEFPEEDVRKARKLVSSFIRAAEEVEEV 161
           REKTKEL R ++EE+EEE+RK++EYREIG RLKEFPE+D+RKARKLVSSFIRAAEEVEE 
Sbjct: 101 REKTKELRRMQREEEEEEERKIEEYREIGTRLKEFPEQDLRKARKLVSSFIRAAEEVEER 130

Query: 162 IND 165
           I +
Sbjct: 161 IEE 130

[Close]

BLAST of HG10011925 vs. ExPASy TrEMBL
Match: A0A5D3E2R9 (Protein PALE CRESS OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00420 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 9.2e-47
Identity = 116/164 (70.73%), Postives = 120/164 (73.17%), Query Frame = 0


Query: 1   MEAQVLCLRFSPVPLLPSTSPFLPKLRTSRFSKHYSSGPVLRRSFSKEEPLIDGLPKEYY 60
           MEAQVLCLRFS +P L ST+P L KL TSR SKHYSSG VLRRSFSKEEPLIDGLPKEYY
Sbjct: 1   MEAQVLCLRFSSLPQLLSTTPILSKLWTSRSSKHYSSGLVLRRSFSKEEPLIDGLPKEYY 60

Query: 61  DDPLDATVVNLFSKILNSCKKILGHQSCSIYHPKREWQARQREKTKELHRRRQEEDEEED 120
           DD                                 EWQARQREKTKELHRRRQEEDEEED
Sbjct: 61  DD---------------------------------EWQARQREKTKELHRRRQEEDEEED 120

Query: 121 RKVKEYREIGMRLKEFPEEDVRKARKLVSSFIRAAEEVEEVIND 165
           RKV+EY EIGMRLKEFPEEDVRKARKLVSSFIRAAEEVEE I +
Sbjct: 121 RKVQEYHEIGMRLKEFPEEDVRKARKLVSSFIRAAEEVEEKIEE 131

[Close]

BLAST of HG10011925 vs. ExPASy TrEMBL
Match: A0A1S3BMU2 (protein PALE CRESS, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491280 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 9.2e-47
Identity = 116/164 (70.73%), Postives = 120/164 (73.17%), Query Frame = 0


Query: 1   MEAQVLCLRFSPVPLLPSTSPFLPKLRTSRFSKHYSSGPVLRRSFSKEEPLIDGLPKEYY 60
           MEAQVLCLRFS +P L ST+P L KL TSR SKHYSSG VLRRSFSKEEPLIDGLPKEYY
Sbjct: 1   MEAQVLCLRFSSLPQLLSTTPILSKLWTSRSSKHYSSGLVLRRSFSKEEPLIDGLPKEYY 60

Query: 61  DDPLDATVVNLFSKILNSCKKILGHQSCSIYHPKREWQARQREKTKELHRRRQEEDEEED 120
           DD                                 EWQARQREKTKELHRRRQEEDEEED
Sbjct: 61  DD---------------------------------EWQARQREKTKELHRRRQEEDEEED 120

Query: 121 RKVKEYREIGMRLKEFPEEDVRKARKLVSSFIRAAEEVEEVIND 165
           RKV+EY EIGMRLKEFPEEDVRKARKLVSSFIRAAEEVEE I +
Sbjct: 121 RKVQEYHEIGMRLKEFPEEDVRKARKLVSSFIRAAEEVEEKIEE 131

[Close]

BLAST of HG10011925 vs. ExPASy TrEMBL
Match: A0A0A0KJC6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G408790 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.2e-43
Identity = 112/164 (68.29%), Postives = 117/164 (71.34%), Query Frame = 0


Query: 1   MEAQVLCLRFSPVPLLPSTSPFLPKLRTSRFSKHYSSGPVLRRSFSKEEPLIDGLPKEYY 60
           MEAQ+LCLRFS +P L ST+P LPKL TS  S   SSG VLRRS SKEEPLIDGLPKEYY
Sbjct: 1   MEAQLLCLRFSSLPPLLSTTPILPKLWTSPSSHRCSSGLVLRRSLSKEEPLIDGLPKEYY 60

Query: 61  DDPLDATVVNLFSKILNSCKKILGHQSCSIYHPKREWQARQREKTKELHRRRQEEDEEED 120
           DD                                 EWQARQREKTKELHRRRQEEDEEED
Sbjct: 61  DD---------------------------------EWQARQREKTKELHRRRQEEDEEED 120

Query: 121 RKVKEYREIGMRLKEFPEEDVRKARKLVSSFIRAAEEVEEVIND 165
           RKV+EYREIGMRLKEFPEEDVRKARKLVSSFIRAAEEVEE I +
Sbjct: 121 RKVEEYREIGMRLKEFPEEDVRKARKLVSSFIRAAEEVEEKIEE 131

[Close]

BLAST of HG10011925 vs. ExPASy TrEMBL
Match: A0A6J1K329 (protein PALE CRESS, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111491264 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 3.6e-43
Identity = 112/164 (68.29%), Postives = 115/164 (70.12%), Query Frame = 0


Query: 1   MEAQVLCLRFSPVPLLPSTSPFLPKLRTSRFSKHYSSGPVLRRSFSKEEPLIDGLPKEYY 60
           M AQVL LR SPVP LPS SP LPKL TS F K YSS PVLRRS SKEEPLIDGLPKEYY
Sbjct: 1   MLAQVLWLRCSPVPPLPSASPTLPKLSTSYFLKLYSSRPVLRRSLSKEEPLIDGLPKEYY 60

Query: 61  DDPLDATVVNLFSKILNSCKKILGHQSCSIYHPKREWQARQREKTKELHRRRQEEDEEED 120
           DD                                 EWQARQREKTKELHRRRQEEDEEE+
Sbjct: 61  DD---------------------------------EWQARQREKTKELHRRRQEEDEEEE 120

Query: 121 RKVKEYREIGMRLKEFPEEDVRKARKLVSSFIRAAEEVEEVIND 165
           RKV+EYREIGMRLK FPEEDVRKARKLVSSFIRA EEVEE I +
Sbjct: 121 RKVEEYREIGMRLKGFPEEDVRKARKLVSSFIRAVEEVEEKIEE 131

[Close]

BLAST of HG10011925 vs. ExPASy TrEMBL
Match: A0A6J1EYI4 (protein PALE CRESS, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111437380 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.5e-41
Identity = 110/164 (67.07%), Postives = 113/164 (68.90%), Query Frame = 0


Query: 1   MEAQVLCLRFSPVPLLPSTSPFLPKLRTSRFSKHYSSGPVLRRSFSKEEPLIDGLPKEYY 60
           M AQV  LR SPVP LPS SP LPKL TS F K YSS PVLRRS SKEEPLIDGLPKEYY
Sbjct: 1   MLAQVRWLRCSPVPPLPSASPTLPKLSTSYFLKLYSSRPVLRRSLSKEEPLIDGLPKEYY 60

Query: 61  DDPLDATVVNLFSKILNSCKKILGHQSCSIYHPKREWQARQREKTKELHRRRQEEDEEED 120
           DD                                 EWQARQREKTKELHRRRQEEDEEE+
Sbjct: 61  DD---------------------------------EWQARQREKTKELHRRRQEEDEEEE 120

Query: 121 RKVKEYREIGMRLKEFPEEDVRKARKLVSSFIRAAEEVEEVIND 165
           RKV+EYREIGMRLK FPEEDV KARKLVSSFIRA EEVEE I +
Sbjct: 121 RKVEEYREIGMRLKGFPEEDVIKARKLVSSFIRAVEEVEEKIEE 131

[Close]

BLAST of HG10011925 vs. TAIR 10
Match: AT2G48120.1 (pale cress protein (PAC) )

HSP 1 Score: 107.8 bits (268), Expect = 8.3e-24
Identity = 66/123 (53.66%), Postives = 80/123 (65.04%), Query Frame = 0


Query: 42  RRSFSKEEPLIDGLPKEYYDDPLDATVVNLFSKILNSCKKILGHQSCSIYHPKREWQARQ 101
           R S + +E L++G+P EYYDD                                 EWQARQ
Sbjct: 41  RCSGNNDEVLLEGMPPEYYDD---------------------------------EWQARQ 100

Query: 102 REKTKELHRRRQEEDEEEDRKVKEYREIGMRLKEFPEEDVRKARKLVSSFIRAAEEVEEV 161
           REKTKEL R ++EE+EEE+RK++EYREIG RLKEFPE+D+RKARKLVSSFIRAAEEVEE 
Sbjct: 101 REKTKELRRMQREEEEEEERKIEEYREIGTRLKEFPEQDLRKARKLVSSFIRAAEEVEER 130

Query: 162 IND 165
           I +
Sbjct: 161 IEE 130

[Close]

BLAST of HG10011925 vs. TAIR 10
Match: AT2G48120.2 (pale cress protein (PAC) )

HSP 1 Score: 93.2 bits (230), Expect = 2.1e-19
Identity = 60/123 (48.78%), Postives = 74/123 (60.16%), Query Frame = 0


Query: 42  RRSFSKEEPLIDGLPKEYYDDPLDATVVNLFSKILNSCKKILGHQSCSIYHPKREWQARQ 101
           R S + +E L++G+P EYYDD                                       
Sbjct: 41  RCSGNNDEVLLEGMPPEYYDD--------------------------------------- 100

Query: 102 REKTKELHRRRQEEDEEEDRKVKEYREIGMRLKEFPEEDVRKARKLVSSFIRAAEEVEEV 161
           REKTKEL R ++EE+EEE+RK++EYREIG RLKEFPE+D+RKARKLVSSFIRAAEEVEE 
Sbjct: 101 REKTKELRRMQREEEEEEERKIEEYREIGTRLKEFPEQDLRKARKLVSSFIRAAEEVEER 124

Query: 162 IND 165
           I +
Sbjct: 161 IEE 124

The following BLAST results are available for this feature:

BLAST of HG10011925 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888470.1	2.0e-48	72.56	protein PALE CRESS, chloroplastic isoform X1 [Benincasa hispida]	[more]
XP_008449384.1	1.9e-46	70.73	PREDICTED: protein PALE CRESS, chloroplastic [Cucumis melo] >TYK30069.1 protein ...	[more]
XP_004140086.1	2.6e-43	68.29	protein PALE CRESS, chloroplastic [Cucumis sativus] >KGN47871.1 hypothetical pro...	[more]
XP_022995861.1	7.5e-43	68.29	protein PALE CRESS, chloroplastic [Cucurbita maxima]	[more]
XP_023534033.1	6.3e-42	67.68	protein PALE CRESS, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10011925 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39089	1.2e-22	53.66	Protein PALE CRESS, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAC PE=2 SV...	[more]

BLAST of HG10011925 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E2R9	9.2e-47	70.73	Protein PALE CRESS OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G0...	[more]
A0A1S3BMU2	9.2e-47	70.73	protein PALE CRESS, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491280 PE=4 S...	[more]
A0A0A0KJC6	1.2e-43	68.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G408790 PE=4 SV=1	[more]
A0A6J1K329	3.6e-43	68.29	protein PALE CRESS, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111491264 PE...	[more]
A0A6J1EYI4	1.5e-41	67.07	protein PALE CRESS, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111437380 ...	[more]

BLAST of HG10011925 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G48120.1	8.3e-24	53.66	pale cress protein (PAC)	[more]
AT2G48120.2	2.1e-19	48.78	pale cress protein (PAC)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..122
IPR034563	Protein PALE CRESS	PANTHER	PTHR37219	PROTEIN PALE CRESS, CHLOROPLASTIC	coord: 95..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10011925.1	HG10011925.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:0010239	chloroplast mRNA processing
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0048366	leaf development
cellular_component	GO:0009501	amyloplast
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009509	chromoplast
cellular_component	GO:0009513	etioplast
cellular_component	GO:0009537	proplastid
cellular_component	GO:0009536	plastid
molecular_function	GO:0003723	RNA binding