HG10011804 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10011804
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	60S acidic ribosomal protein P1-like
Location	Chr01: 12538128 .. 12539048 (+)
RNA-Seq Expression	HG10011804
Synteny	HG10011804

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACCAGTGAACTCGCTTGCGCCTACGCCGCCCTGGCTCTTCACGACGACGGAATCGCAATCACTGTACGAACCATTCTCTTTCTCTGTATTTATCTTTTCCTTTTCTGGATTGGTCGATGTGCGATTAATCTGCGTATTTGCGTCTAGGCGGAAAAGATTGCAGCCGTTGTAGCAGCTGCGGGGCTTTGTGTGGAATCTTACTGGCCCAGCCTTTTTGCTAAATTGGCGGAGAAGAGGAATATTGGGGACCTTCTTCTGAATGTTGGCTGTGGAGGTGGCGCTGCGGCTCCCGTGTCTGTTTCCGCTCCTGCCGTCAGTGCTGCTGCCGCTCCTGCCGTCGAGGAAAAGAAGGTATGCTGATGAATGTTTATTTACTTTCAACACTAACCCTTTTATTCAATATACTTCCCTGTATCTGCTACCTCTAACTTTCCATTTACTCTCGATTTTCAATAAGGATCTCTTTCATGTATACCCATATAGCCCAGATTCTGTAGGTTGCTAATACTAATACCTGTTAGTTATGACTGCTGAATAAGTTAATTGTGAAAAAAAATGAACTGTTTTACGGTTGCCGTGCTGCTTCAATTTAGTATTTCGCAATTAACCCATTAGGTGGTTCATGATATCCCTTTGGACTTGTATTAGCGACATACAAATGTGGTTTAGAAATGTGTATCTAAGAGATTCAATAGTAAGCTTCATATTGATGAGCATAATTTGTAGTTTTGAAAATTTTAATTTCCACATTCATTGATTGACATGGTAGTGACTTGAAATCAGTCTTATTGTTCCAATTTAGTTTCCTTCGCCTCCTCTTTTCCCTATTCTGCAATTTTTTCATTTAAGCCTATTGTGCAGGAGGAGCCAAAGGAAGAGAGCGATGACGACATGGGATTCAGCTTATTCGATTAG

mRNA sequence

ATGTCTACCAGTGAACTCGCTTGCGCCTACGCCGCCCTGGCTCTTCACGACGACGGAATCGCAATCACTGCGGAAAAGATTGCAGCCGTTGTAGCAGCTGCGGGGCTTTGTGTGGAATCTTACTGGCCCAGCCTTTTTGCTAAATTGGCGGAGAAGAGGAATATTGGGGACCTTCTTCTGAATGTTGGCTGTGGAGGTGGCGCTGCGGCTCCCGTGTCTGTTTCCGCTCCTGCCGTCAGTGCTGCTGCCGCTCCTGCCGTCGAGGAAAAGAAGGAGGAGCCAAAGGAAGAGAGCGATGACGACATGGGATTCAGCTTATTCGATTAG

Coding sequence (CDS)

ATGTCTACCAGTGAACTCGCTTGCGCCTACGCCGCCCTGGCTCTTCACGACGACGGAATCGCAATCACTGCGGAAAAGATTGCAGCCGTTGTAGCAGCTGCGGGGCTTTGTGTGGAATCTTACTGGCCCAGCCTTTTTGCTAAATTGGCGGAGAAGAGGAATATTGGGGACCTTCTTCTGAATGTTGGCTGTGGAGGTGGCGCTGCGGCTCCCGTGTCTGTTTCCGCTCCTGCCGTCAGTGCTGCTGCCGCTCCTGCCGTCGAGGAAAAGAAGGAGGAGCCAAAGGAAGAGAGCGATGACGACATGGGATTCAGCTTATTCGATTAG

Protein sequence

MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAVSAAAAPAVEEKKEEPKEESDDDMGFSLFD

Homology

[Close]

BLAST of HG10011804 vs. NCBI nr
Match: XP_038905168.1 (60S acidic ribosomal protein P1-like [Benincasa hispida])

HSP 1 Score: 199.1 bits (505), Expect = 1.9e-47
Identity = 106/108 (98.15%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGGGAAAPVSVSAPAVSAAAAPAVEEKKEEPKEESDDDMGFSLFD 109
           NVGCGGGAAAPV+V+APAVSAAAAPAVEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAPVAVAAPAVSAAAAPAVEEKKEEPKEESDDDMGFSLFD 108

[Close]

BLAST of HG10011804 vs. NCBI nr
Match: XP_038905286.1 (60S acidic ribosomal protein P1-like [Benincasa hispida])

HSP 1 Score: 194.9 bits (494), Expect = 3.6e-46
Identity = 104/108 (96.30%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAALALHDDGIAITAEKIAAV+AAAGL VESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITAEKIAAVIAAAGLSVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGGGAAAPVSVSAPAVSAAAAPAVEEKKEEPKEESDDDMGFSLFD 109
           NVGCGGGAAAPV+V+APAVSAAAAPAVEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAPVAVAAPAVSAAAAPAVEEKKEEPKEESDDDMGFSLFD 108

[Close]

BLAST of HG10011804 vs. NCBI nr
Match: XP_008455614.1 (PREDICTED: 60S acidic ribosomal protein P1-like isoform X1 [Cucumis melo])

HSP 1 Score: 192.6 bits (488), Expect = 1.8e-45
Identity = 102/108 (94.44%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGGGAAAPVSVSAPAVSAAAAPAVEEKKEEPKEESDDDMGFSLFD 109
           NVGCGGGAAAPV+V+AP  SAAAA A+EEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAPVAVAAPTASAAAASAIEEKKEEPKEESDDDMGFSLFD 108

[Close]

BLAST of HG10011804 vs. NCBI nr
Match: XP_004138012.2 (60S acidic ribosomal protein P1 [Cucumis sativus] >KGN63426.1 hypothetical protein Csa_013711 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 4.0e-45
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGGGAAAPVSVSAPAVSAAAAPAVEEKKEEPKEESDDDMGFSLFD 109
           NVGCGGGAAA V+V+AP  SAAAAPA+EEK+EEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAASVAVAAPTASAAAAPAIEEKREEPKEESDDDMGFSLFD 108

[Close]

BLAST of HG10011804 vs. NCBI nr
Match: KAA0045366.1 (60S acidic ribosomal protein P1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 191.0 bits (484), Expect = 5.2e-45
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGGGAAAPVSVSAPAVSAAAAPAVEEKKEEPKEESDDDMGFSLFD 109
           NVGCGGGAAAPV+V+AP  SAA A A+EEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAPVAVAAPTASAAVASAIEEKKEEPKEESDDDMGFSLFD 108

[Close]

BLAST of HG10011804 vs. ExPASy Swiss-Prot
Match: P52855 (60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 5.6e-34
Identity = 82/110 (74.55%), Postives = 93/110 (84.55%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           M++ ELAC YAAL L DDGIAITAEKIA +V AA + VESYWP+LFAKL EKRN+ DL+L
Sbjct: 1   MASGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLIL 60

Query: 61  NVGCGGGAAAPVSVSAPA--VSAAAAPAVEEKKEEPKEESDDDMGFSLFD 109
           +VG GGG AAPV+ +APA   +AAAAPAVEEKKEE KEESDDDMGFSLFD
Sbjct: 61  SVGSGGG-AAPVAAAAPAGGAAAAAAPAVEEKKEEAKEESDDDMGFSLFD 109

[Close]

BLAST of HG10011804 vs. ExPASy Swiss-Prot
Match: Q8LCW9 (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 SV=2)

HSP 1 Score: 132.9 bits (333), Expect = 2.2e-30
Identity = 74/112 (66.07%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
           MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAAPVSVSAPAV--SAAAAPAVEE-KKEEPKEESDDDMGFSLFD 109
           +NVG GGG  APV+ +APA    AAAAPA EE KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112

[Close]

BLAST of HG10011804 vs. ExPASy Swiss-Prot
Match: Q8LEQ0 (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana OX=3702 GN=RPP1C PE=1 SV=2)

HSP 1 Score: 132.9 bits (333), Expect = 2.2e-30
Identity = 74/113 (65.49%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 1   MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
           MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAAPVSVSAPAV---SAAAAPAVEE-KKEEPKEESDDDMGFSLFD 109
           +NVG GGG  APV+ +APA    +AAAAPA EE KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of HG10011804 vs. ExPASy Swiss-Prot
Match: O23095 (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana OX=3702 GN=RPP1B PE=1 SV=2)

HSP 1 Score: 131.0 bits (328), Expect = 8.4e-30
Identity = 74/113 (65.49%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 1   MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
           MST  ELAC+YA + L D+GIAIT++KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGC-GGGAAAPVSVSAPAV---SAAAAPAVEEKKEEPKEESDDDMGFSLFD 109
           +NVG  GGG  APVS +APA    +AAAAPA EEKK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGGAPVSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of HG10011804 vs. ExPASy Swiss-Prot
Match: P29763 (60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii OX=3055 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.4e-24
Identity = 69/112 (61.61%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELAC YAAL LHDDG+ ITA+ I  +  AAG+ VE YWP+LFAKL  K+++ DL+ 
Sbjct: 1   MSTSELACTYAALILHDDGLEITADNINTICKAAGVEVEGYWPALFAKLFAKKSMDDLIT 60

Query: 61  NVGCGGG----AAAPVSVSAPAVSAAAAPAVEEKKEEPKEESDDDMGFSLFD 109
           NVG GGG    AAAP +  APA  A AAP  EEKKE  +EE   DMGFSLFD
Sbjct: 61  NVGAGGGAAPAAAAPAAGGAPA--AGAAPKKEEKKEPSEEE---DMGFSLFD 107

[Close]

BLAST of HG10011804 vs. ExPASy TrEMBL
Match: A0A1S3C0X1 (60S acidic ribosomal protein P1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495745 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 8.6e-46
Identity = 102/108 (94.44%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGGGAAAPVSVSAPAVSAAAAPAVEEKKEEPKEESDDDMGFSLFD 109
           NVGCGGGAAAPV+V+AP  SAAAA A+EEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAPVAVAAPTASAAAASAIEEKKEEPKEESDDDMGFSLFD 108

[Close]

BLAST of HG10011804 vs. ExPASy TrEMBL
Match: A0A0A0LTV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G000010 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.9e-45
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGGGAAAPVSVSAPAVSAAAAPAVEEKKEEPKEESDDDMGFSLFD 109
           NVGCGGGAAA V+V+AP  SAAAAPA+EEK+EEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAASVAVAAPTASAAAAPAIEEKREEPKEESDDDMGFSLFD 108

[Close]

BLAST of HG10011804 vs. ExPASy TrEMBL
Match: A0A5A7TTB2 (60S acidic ribosomal protein P1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001460 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.5e-45
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGGGAAAPVSVSAPAVSAAAAPAVEEKKEEPKEESDDDMGFSLFD 109
           NVGCGGGAAAPV+V+AP  SAA A A+EEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAPVAVAAPTASAAVASAIEEKKEEPKEESDDDMGFSLFD 108

[Close]

BLAST of HG10011804 vs. ExPASy TrEMBL
Match: A0A6J1CGB2 (60S acidic ribosomal protein P1-like OS=Momordica charantia OX=3673 GN=LOC111011416 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.1e-44
Identity = 102/111 (91.89%), Postives = 107/111 (96.40%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAA+AL+DDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1   MSTSELACAYAAMALYDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGGGAAAPVSVSAP---AVSAAAAPAVEEKKEEPKEESDDDMGFSLFD 109
           NVGCGGGAAAPVSV+AP   A ++AAAPAVEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAPVSVAAPAGGAAASAAAPAVEEKKEEPKEESDDDMGFSLFD 111

[Close]

BLAST of HG10011804 vs. ExPASy TrEMBL
Match: A0A6J1G2H4 (60S acidic ribosomal protein P1-like OS=Cucurbita moschata OX=3662 GN=LOC111450051 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.4e-43
Identity = 101/110 (91.82%), Postives = 106/110 (96.36%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAALALHDDGIAITA+KIAAVVAAAGLCVESYWPSLFAKLAEKR+IGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60

Query: 61  NVGCGGGAAAPVSVSAPA--VSAAAAPAVEEKKEEPKEESDDDMGFSLFD 109
           NVGCGGGAAA VSV+APA   ++AAAPAVEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAAVSVAAPAGGAASAAAPAVEEKKEEPKEESDDDMGFSLFD 110

[Close]

BLAST of HG10011804 vs. TAIR 10
Match: AT1G01100.1 (60S acidic ribosomal protein family )

HSP 1 Score: 132.9 bits (333), Expect = 1.6e-31
Identity = 74/112 (66.07%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
           MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAAPVSVSAPAV--SAAAAPAVEE-KKEEPKEESDDDMGFSLFD 109
           +NVG GGG  APV+ +APA    AAAAPA EE KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112

[Close]

BLAST of HG10011804 vs. TAIR 10
Match: AT1G01100.2 (60S acidic ribosomal protein family )

HSP 1 Score: 132.9 bits (333), Expect = 1.6e-31
Identity = 74/112 (66.07%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
           MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAAPVSVSAPAV--SAAAAPAVEE-KKEEPKEESDDDMGFSLFD 109
           +NVG GGG  APV+ +APA    AAAAPA EE KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112

[Close]

BLAST of HG10011804 vs. TAIR 10
Match: AT1G01100.4 (60S acidic ribosomal protein family )

HSP 1 Score: 132.9 bits (333), Expect = 1.6e-31
Identity = 74/112 (66.07%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
           MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAAPVSVSAPAV--SAAAAPAVEE-KKEEPKEESDDDMGFSLFD 109
           +NVG GGG  APV+ +APA    AAAAPA EE KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112

[Close]

BLAST of HG10011804 vs. TAIR 10
Match: AT5G47700.1 (60S acidic ribosomal protein family )

HSP 1 Score: 132.9 bits (333), Expect = 1.6e-31
Identity = 74/113 (65.49%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 1   MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
           MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAAPVSVSAPAV---SAAAAPAVEE-KKEEPKEESDDDMGFSLFD 109
           +NVG GGG  APV+ +APA    +AAAAPA EE KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of HG10011804 vs. TAIR 10
Match: AT5G47700.2 (60S acidic ribosomal protein family )

HSP 1 Score: 132.9 bits (333), Expect = 1.6e-31
Identity = 74/113 (65.49%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 1   MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
           MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAAPVSVSAPAV---SAAAAPAVEE-KKEEPKEESDDDMGFSLFD 109
           +NVG GGG  APV+ +APA    +AAAAPA EE KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

The following BLAST results are available for this feature:

BLAST of HG10011804 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905168.1	1.9e-47	98.15	60S acidic ribosomal protein P1-like [Benincasa hispida]	[more]
XP_038905286.1	3.6e-46	96.30	60S acidic ribosomal protein P1-like [Benincasa hispida]	[more]
XP_008455614.1	1.8e-45	94.44	PREDICTED: 60S acidic ribosomal protein P1-like isoform X1 [Cucumis melo]	[more]
XP_004138012.2	4.0e-45	93.52	60S acidic ribosomal protein P1 [Cucumis sativus] >KGN63426.1 hypothetical prote...	[more]
KAA0045366.1	5.2e-45	93.52	60S acidic ribosomal protein P1-like isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of HG10011804 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P52855	5.6e-34	74.55	60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1	[more]
Q8LCW9	2.2e-30	66.07	60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 ...	[more]
Q8LEQ0	2.2e-30	65.49	60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana OX=3702 GN=RPP1C PE=1 ...	[more]
O23095	8.4e-30	65.49	60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana OX=3702 GN=RPP1B PE=1 ...	[more]
P29763	1.4e-24	61.61	60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii OX=3055 PE=3 SV=1	[more]

BLAST of HG10011804 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C0X1	8.6e-46	94.44	60S acidic ribosomal protein P1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0LTV1	1.9e-45	93.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G000010 PE=3 SV=1	[more]
A0A5A7TTB2	2.5e-45	93.52	60S acidic ribosomal protein P1-like isoform X1 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A6J1CGB2	2.1e-44	91.89	60S acidic ribosomal protein P1-like OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1G2H4	1.4e-43	91.82	60S acidic ribosomal protein P1-like OS=Cucurbita moschata OX=3662 GN=LOC1114500...	[more]

BLAST of HG10011804 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01100.1	1.6e-31	66.07	60S acidic ribosomal protein family	[more]
AT1G01100.2	1.6e-31	66.07	60S acidic ribosomal protein family	[more]
AT1G01100.4	1.6e-31	66.07	60S acidic ribosomal protein family	[more]
AT5G47700.1	1.6e-31	65.49	60S acidic ribosomal protein family	[more]
AT5G47700.2	1.6e-31	65.49	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 22..107 e-value: 4.7E-24 score: 84.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..108
None	No IPR available	PANTHER	PTHR45696	60S ACIDIC RIBOSOMAL PROTEIN P1	coord: 1..108
None	No IPR available	CDD	cd05831	Ribosomal_P1	coord: 16..107 e-value: 4.32412E-22 score: 81.2139
IPR038716	Ribosomal protein P1/P2, N-terminal domain	GENE3D	1.10.10.1410		coord: 1..63 e-value: 7.0E-30 score: 104.7
IPR027534	Ribosomal protein L12/P1/P2 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 6..108 score: 14.075464

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10011804.1	HG10011804.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032147	activation of protein kinase activity
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0030295	protein kinase activator activity
molecular_function	GO:0043021	ribonucleoprotein complex binding
molecular_function	GO:0003735	structural constituent of ribosome